Dataset Overview
RBPRCC2
Knock-MethodshRNA
RBP FamilyNon-canonical_RBP
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR921KDS
PlatformHiSeq
Pubmed ID32252787

RCC2 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of RCC2
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of RCC2


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr1146649854CT0.00033PDIA3P1+FALSE
chr1146400122CG0.00039NBPF20,NBPF10,NBPF25P,NBPF12+FALSE
chr5125961554AG0.00355PHAX+TRUEAluSz6SINE,Alu
chr46302519GA0.00195WFS1+FALSE
chr124862643TG0.00079RCAN3+FALSE
chr1108742130TC1.29742E-06SLC25A24-FALSE
chr261370704TA0.00747LOC339803-FALSE
chr1120163248GA0.00711ZNF697-FALSE
chr1228880021CT4.50271E-05RHOU+FALSE
chr1900717CT0.00661KLHL17+FALSE(TTTA)nSINE,Alu
chr352289298GT0.00059WDR82-FALSE
chr1100316589AG0.00481AGL+FALSE
chr317201871TC0.00626TBC1D5-FALSE
chr116932428CG0.00620NBPF1-FALSEL1MC2SINE,Alu
chr1115313028TA0.00448SIKE1-FALSEAluSx1SINE,Alu
chr1958357268AG0.00099ZNF587B+TRUEAluSx3SINE,Alu
chr120976589CT0.00407PINK1,PINK1-AS+,-FALSE
chr1145512944AG0.00110NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr1207219603TC0.00341YOD1-FALSE
chr2128949342AG0.00397UGGT1+TRUEAluSgSINE,Alu
chr2128950217CT0.00255UGGT1+FALSE
chr199672943TC1.63385E-06.FALSEAluSx3SINE,Alu
chr417803673TC0.00206DCAF16-TRUEAluYSINE,Alu
chr320195395CT3.65176E-06KAT2B+FALSE
chr298388811CG0.00123TMEM131-FALSE
chr5141690819GA0.00062SPRY4-FALSE
chr2206983797TC0.00145.FALSEAluSxSINE,Alu
chr167874696TC0.00014SERBP1-TRUEAluSx3SINE,Alu
chr1200375418CT0.00671ZNF281-FALSE
chr1269237042AG0.00413MDM2+TRUE
chr457327017AG4.29594E-07PAICS+TRUEAluSx1SINE,Alu
chr2101893247CA0.00237RNF149-FALSE(A)nSINE,Alu
chr138423055CA0.00015SF3A3-FALSE
chr2198416724AT0.00378HSPE1-MOB4,MOB4+FALSE
chr12121118CT0.00234FAAP20-FALSE
chr4761850TC0.00026PCGF3+FALSE
chr153289892AG0.00079ZYG11B+TRUEFRAMSINE,Alu
chr1220231263TC0.00116RNU5F-1,BPNT1+,-FALSEAluYSINE,Alu
chr9114696428GT0.00163UGCG+FALSE(TGTTTTT)nSINE,Alu
chr3183976477CT0.00215ECE2+FALSE
chrX77083548TC0.00205MAGT1-TRUEAluSz6SINE,Alu
chr124796069AC0.00403NIPAL3+FALSE
chr225456869GA0.00902DNMT3A-FALSE
chr136067838TC0.00348PSMB2-TRUEAluSzSINE,Alu
chr2025428724AG0.00789GINS1+TRUEAluJbSINE,Alu
chr162164735CT0.00016TM2D1-FALSEAluJbSINE,Alu
chr132833541TC0.00903BSDC1-TRUE
chr261152521GA0.00134REL+FALSE
chr3124686323AT0.00146HEG1-FALSE
chr345722253AG0.00670LIMD1,LIMD1-AS1+,-FALSEAluSzSINE,Alu
chr119234174AG0.00046IFFO2-FALSE
chr1532820880CG0.00672WHAMMP1-FALSE
chr2132481470CT0.00594C2orf27A+FALSE
chr1161930908GA0.00664ATF6+FALSE
chr126158907AG0.00061MTFR1L,AUNIP+,-FALSE
chr133148721AG0.00359SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr1109856391GC0.00569SORT1-FALSE
chr128661736AG0.00048MED18+TRUEAluSgSINE,Alu
chr246612340GT0.00094EPAS1+FALSE
chr2129024408GA0.00502HS6ST1-FALSE
chr1206557430CT0.00011SRGAP2+FALSE
chr110520130TC0.00355.FALSEAluSxSINE,Alu
chr1629454288TC9.60363E-06SMG1P6,BOLA2-SMG1P6-FALSETigger4aSINE,Alu
chr1757656854CT0.00928DHX40+FALSE
chr151822219GA0.00325EPS15-FALSE
chr5176883676AT0.00456DBN1-FALSE(A)nSINE,Alu
chr1183105534TC0.00424LAMC1+FALSE
chr110520331CT0.00065.FALSEAluSx1SINE,Alu
chr116890639CT8.47214E-05NBPF1-FALSE
chr116933753GA0.00609NBPF1-FALSEGA-richSINE,Alu
chr2114356336CT0.00680WASH2P+FALSE
chr126604691GC0.00043CEP85+FALSE
chr140537944CA0.00506CAP1+FALSE
chr2112252630AC0.00040MIR4435-2HG-FALSE
chr543574976TC0.00613NNT-AS1-TRUEAluSq2SINE,Alu
chr1233086456TC7.28865E-05NTPCR+FALSE
chr11245164CT0.00318PUSL1+FALSE
chr13730332TC0.00025CEP104-TRUEAluSx3SINE,Alu
chr1947278340AG0.00449SLC1A5-FALSE(AC)nSINE,Alu
chr3181430334GA0.00305SOX2-OT,SOX2+FALSE
chr1120163007GA0.00573ZNF697-FALSE
chr138327586CT0.00198INPP5B-FALSEAluSx3SINE,Alu
chr568850922GC0.00323OCLN+FALSEAluSx4SINE,Alu
chr42940413TC0.00311NOP14-AS1,NOP14+,-FALSEAluJoSINE,Alu
chr9115446747TC0.00648INIP-TRUEAluJrSINE,Alu
chr1109855150AC0.00062SORT1-FALSEA-richSINE,Alu
chr1563356574GA0.00845TPM1+FALSE
chr136068370TC4.62049E-05PSMB2-TRUEAluScSINE,Alu
chr1206566948GA0.00568SRGAP2+FALSE
chr2178129412GT0.00071NFE2L2-FALSE(CGG)nSINE,Alu
chr537290493TC3.58668E-05.FALSEAluSzSINE,Alu
chr8145159709CA0.00314MAF1+FALSE
chr5122359498AC0.00038PPIC-FALSE(AC)nSINE,Alu
chr3160968914TC0.00305NMD3+FALSE
chr140537943AC0.00115CAP1+FALSE(A)nSINE,Alu
chr1145513125AG0.00274NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr11653093AG0.00768CDK11B,CDK11A-FALSEL2SINE,Alu
chr136282608GT0.00886AGO4+FALSE
chr119542458TC6.76498E-05LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr239009425AG0.00607.FALSEAluSx3SINE,Alu
chr1109239334AT0.00035PRPF38B+FALSE
chr247399601AG0.00102CALM2-FALSE
chr11018144TC0.00019C1orf159-FALSE
chr1226923264GA0.00046ITPKB-FALSE
chr19162223TC0.00778.FALSEAluSxSINE,Alu
chr1156713558GA8.10199E-06HDGF-FALSE
chr116892256TC0.00370NBPF1-FALSE
chr11534676CT4.01953E-10FNDC10-FALSE
chr1541591457AG1.25234E-05OIP5-AS1+TRUEAluSxSINE,Alu
chr1162497739GC0.00138UHMK1+FALSE
chr119543459TC0.00540LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr1541590982AG0.00327OIP5-AS1+TRUEAluSx1SINE,Alu
chr1942375585AG0.00022.FALSEAluSxSINE,Alu
chr1277438436TC0.00187E2F7-FALSE
chr1242011534AG0.00248EXO1+FALSE
chr1155214017CA0.00261GBA-FALSEAluSx3SINE,Alu
chr189648329TC0.00093GBP4-TRUEAluYg6SINE,Alu
chr3197399402TC0.00840RUBCN-FALSE
chr16583270CG0.00529NOL9-FALSE
chr133145957GT0.00189SYNC,RBBP4+,-FALSE(T)nSINE,Alu
chr1204520442AG7.81381E-05MDM4+TRUEAluJbSINE,Alu
chr220648946CT0.00531RHOB+FALSE
chr153289759AG0.00060ZYG11B+TRUEAluSzSINE,Alu
chr126755209AG0.00745LIN28A+FALSEAluSx1SINE,Alu
chr2189877304AT0.00612COL3A1+FALSE
chr765992794TC0.00820.FALSEAluJrSINE,Alu
chr848889823CA0.00770MCM4+FALSEAluSx3SINE,Alu
chr1528502279AG0.00120HERC2-FALSE
chr733060946AG0.00542NT5C3A-FALSE
chr2206981874TC0.00060.FALSEAluJbSINE,Alu
chr19162224TC0.00523.FALSEAluSxSINE,Alu
chr766105198CA0.00456KCTD7+FALSE
chr1610625320TC0.00923EMP2-TRUEAluSxSINE,Alu
chr4129795661AT0.00165JADE1+FALSE
chr1145688668AT0.00987NBPF20,NBPF10,RNF115+FALSE
chr1152187945CT9.69718E-05HRNR-FALSE(GCCAGA)nSINE,Alu
chr1565442647TC2.02205E-07CLPX-TRUEAluSg4SINE,Alu
chr56491892GA0.00707UBE2QL1+FALSE
chr299813015AG0.00235MRPL30+TRUEAluJbSINE,Alu
chr144818529TC0.00310ERI3-FALSE
chr5290174CT0.00083PDCD6+FALSE
chr14103372464CA0.00577TRAF3+FALSE(AC)nSINE,Alu
chr1569492TC0.00336.FALSE
chr3107763040GA1.74111E-05CD47-FALSE
chr1689630630CT0.00296RPL13+FALSE
chr126143725AT0.00988SEPN1+FALSEAluSxSINE,Alu
chr19331101AG0.00072H6PD+FALSEAluSxSINE,Alu
chr1110049203GC0.00209.FALSE
chr128906337AG0.00810SNHG12,SNORA61-FALSE
chr1778226862AC0.00590SLC26A11+FALSE
chr19328106AG0.00394H6PD+TRUEAluJrSINE,Alu
chr237331560TC6.28398E-05.FALSEAluJbSINE,Alu
chr1114443609AG0.00035AP4B1-AS1,AP4B1+,-FALSEAluSpSINE,Alu
chrX123046302AG0.00649XIAP+TRUEAluJbSINE,Alu
chr642856029AG0.00099RPL7L1+TRUEAluSzSINE,Alu
chr1296661616AG0.00057ELK3+FALSE
chr1117945049GA0.00120MAN1A2+FALSE
chr111084103TA0.00162TARDBP+FALSE
chr224494638TG0.00495ITSN2-FALSE(TATCCT)nSINE,Alu
chr110517512TC0.00514.FALSEAluSx1SINE,Alu
chr116011005GC0.00616PLEKHM2+FALSE(GCG)nSINE,Alu
chr110521238TC0.00797DFFA-TRUEAluYSINE,Alu
chr4247533AG0.00972ZNF876P+FALSE
chr1120101744CA0.00540NAV2+FALSE
chr116478619GA0.00656TRIM3-FALSE
chr18045340CA0.00242PARK7+FALSE
chr1578841543TA0.00438PSMA4+FALSE
chr133148736AG4.97736E-05SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr2242122440CA0.00354PPP1R7+FALSE
chr145244413TA0.00750.FALSE
chr136068295TC0.00076PSMB2-TRUEAluScSINE,Alu
chr1200589540TA0.00151KIF14-FALSE
chr132801694AC0.00847MARCKSL1-FALSE
chr224224000AG0.00464.FALSEAluSpSINE,Alu
chr126143725AT0.00291SEPN1+FALSEAluSxSINE,Alu
chr119665310CT0.00618CAPZB-FALSE(TTTCT)nSINE,Alu
chr417803026TC0.00396DCAF16-TRUEAluSzSINE,Alu
chr2223436459AT1.48017E-05FARSB-FALSE
chr417804847TC0.00512DCAF16-TRUEAluSxSINE,Alu
chr417802824TC0.00594DCAF16-TRUEAluSzSINE,Alu
chr145279903CT0.00052.FALSE(TCTT)nSINE,Alu
chr3181430144CT0.00043SOX2-OT,SOX2+FALSE
chr417629434AG0.00661.FALSEAluSx3SINE,Alu
chr6118029818TG0.00119NUS1+FALSE
chr168940887TG0.00293DEPDC1-FALSEMIRSINE,Alu
chr3156258230TC0.00011SSR3-TRUEAluYk3SINE,Alu
chr632147696GA6.22517E-06.FALSE
chr1100440553AG9.79324E-05SLC35A3+TRUEAluJbSINE,Alu
chr1220231982TC0.00328RNU5F-1,BPNT1+,-FALSEAluSzSINE,Alu
chr41228741GA0.00095CTBP1-FALSE
chr261277798AG0.00077PEX13+TRUEAluYSINE,Alu
chr1776799795GA0.00363USP36-FALSE
chr1109818270CT0.00996CELSR2+FALSE
chr110518688TC0.00341.FALSEAluSx1SINE,Alu
chr116893691CA0.00764NBPF1-FALSE
chr1146650916CT0.00025PDIA3P1+FALSE
chr67310259AG0.00092SSR1-FALSE
chr159124803CT0.00974MYSM1-FALSE
chr116889575TC0.00969NBPF1-TRUE
chr897506373CG0.00579SDC2+FALSE(CCCCGAG)nSINE,Alu
chr457326159AG0.00019PAICS+TRUEAluJrSINE,Alu
chr125894466AC0.00783LDLRAP1+FALSEMIRbSINE,Alu
chr4663908AG0.00320PDE6B+FALSE
chr765618786AG3.58027E-08CRCP+TRUEAluSx3SINE,Alu
chr12133635613TC0.00024.FALSE
chr140539201AG0.00028PPT1-FALSE
chr1143189476AG0.00160LOC102723769-FALSE
chr1951305797TC0.00397C19orf48-TRUEAluSgSINE,Alu
chr145987557GC0.00921PRDX1-FALSE
chr457327022AG0.00057PAICS+TRUEAluSx1SINE,Alu
chr1256510697GA0.00989RPL41+FALSE
chr116889217GC0.00696NBPF1-FALSEL1MC4SINE,Alu
chr126188238GA0.00148PAQR7-FALSEAluSpSINE,Alu
chr167874696TC0.00839SERBP1-TRUEAluSx3SINE,Alu
chr167874849TC7.36358E-05SERBP1-TRUEAluSxSINE,Alu
chr2203922075AG0.00058NBEAL1+FALSE
chrX73421601TC0.00219FTX-TRUEL1MB7SINE,Alu
chr477996987TC0.00240CCNI-FALSE
chr19161142TC8.95302E-05.FALSEAluSxSINE,Alu
chr1144615223CG0.00324NBPF20,NBPF9+FALSE
chr1264842925AG0.00345.FALSEAluSzSINE,Alu
chr2181737842CT0.00350SCHLAP1+FALSE
chr237328097TC3.71887E-07.FALSE
chr6108364582TC0.00577OSTM1-FALSE
chr717384880AG0.00027AHR+TRUEAluScSINE,Alu
chr344791536TC4.11776E-05KIAA1143-TRUEAluJrSINE,Alu
chr1113213009AT0.00556CAPZA1+FALSE
chr133148698AG0.00736SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr110518037TC0.00285.FALSEAluJrSINE,Alu
chr127879798AG0.00899AHDC1-FALSEMIRbSINE,Alu
chr1610624953TC0.00056EMP2-TRUEAluSx3SINE,Alu
chr5149013844TA0.00366ARHGEF37+FALSE
chr19163839AG0.00237.FALSE
chr145976268GA0.00168MMACHC+FALSE
chr2206986245TC0.00979.FALSEAluSzSINE,Alu
chr110520117TC0.00188.FALSEAluSxSINE,Alu
chr4144442611TC0.00899SMARCA5+FALSE
chr1729578724CT0.00514NF1+FALSE
chr1145511998AG0.00715NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr1183596136AG0.00123ARPC5-FALSE
chr1945406537TC0.00278TOMM40+FALSE
chr439552183TC0.00479UGDH-AS1,SMIM14+,-FALSEAluSxSINE,Alu
chr1953914448AG0.00583ZNF765+TRUEAluSxSINE,Alu
chr5130494984AT0.00018HINT1-FALSE
chr9138798859CA0.00291CAMSAP1-FALSE
chr6143382538AT0.00145AIG1+FALSE
chr150906945CT0.00178FAF1-FALSE
chr1100388748TC0.00445AGL+FALSE
chr12133334975TC0.00070ANKLE2-TRUEAluSzSINE,Alu
chr2174090321CA0.00273ZAK,MLK7-AS1+,-FALSEAluSxSINE,Alu
chr132697071CA0.00134EIF3I+FALSEAluSpSINE,Alu
chr125894460TA0.00520LDLRAP1+FALSEMIRbSINE,Alu
chr314986111TC0.00999FGD5-AS1-TRUEFLAM_CSINE,Alu
chr4152025793TA0.00675RPS3A+FALSE
chr348787052TC0.00226PRKAR2A-TRUEAluSx3SINE,Alu
chr237331745TC0.00097.FALSEAluJbSINE,Alu
chr2102484205TA0.00434MAP4K4+FALSE
chr153289688AG0.00731ZYG11B+TRUEAluSzSINE,Alu
chr71199790GC0.00049ZFAND2A-FALSE
chr1919793729AG0.00124ZNF101+TRUEAluSc8SINE,Alu
chr11593828GC0.00348CDK11B,SLC35E2B-FALSE
chrX123046892AG0.00064XIAP+TRUEAluSxSINE,Alu
chr146075715AG0.00058NASP+TRUEAluSx4SINE,Alu
chr1346530764TG0.00385.FALSE
chr2239970718CA0.00244HDAC4-FALSE(AAAAC)nSINE,Alu
chr1942376692AG0.00540.FALSEAluSpSINE,Alu
chr1179326588AG0.00563SOAT1+TRUEAluSgSINE,Alu
chr1148556753GA0.00272.FALSE
chr117739586GA0.00093RCC2-FALSE
chr175171751TC0.00563CRYZ-FALSE
chr6150047420TC2.23465E-06NUP43-TRUEAluScSINE,Alu
chr3181431106CG0.00542SOX2-OT,SOX2+FALSE
chr116932428CG0.00017NBPF1-FALSEL1MC2SINE,Alu
chr129098987TA0.00180M6PR-FALSE
chr136067858GA0.00293PSMB2-FALSEAluSzSINE,Alu
chr116890130AC0.00753NBPF1-FALSE
chr121795388AG0.00732NBPF3+FALSE
chr1622297295AG0.00749EEF2K+TRUEAluJrSINE,Alu
chr642855256AG0.00572RPL7L1+TRUEAluSpSINE,Alu
chr120977221AT0.00116PINK1,PINK1-AS+,-FALSE
chr810689212CT3.39921E-05PINX1-FALSE
chr237330476TC0.00269.FALSEAluSq2SINE,Alu

Differential Expression Gene Analysis