RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	145442111	C	A	0.00090	NBPF20,NBPF10,TXNIP	+	FALSE
chr6	42048128	G	T	0.00604	TAF8	+	FALSE	AluSq2	SINE,Alu
chr1	17394775	G	A	0.00103	PADI2	-	FALSE
chr6	52269046	C	G	0.00338	PAQR8	+	FALSE
chr5	37291446	T	C	6.87884E-05		.	FALSE	AluSx3	SINE,Alu
chr1	33149363	A	G	0.00237	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	201488143	A	G	0.00492		.	FALSE	AluSz	SINE,Alu
chr1	33139061	T	C	0.00079	RBBP4	+	FALSE	AluSx3	SINE,Alu
chr1	28785597	G	C	0.00595	PHACTR4	+	FALSE
chr1	233514975	G	T	0.00584	MLK4	+	FALSE
chr1	10520174	T	C	0.00158		.	FALSE	AluSx	SINE,Alu
chr1	145291217	C	T	0.00415	NBPF20	+	FALSE
chr1	156713558	G	A	8.10199E-06	HDGF	-	FALSE
chr3	179042832	A	G	0.00308	ZNF639	+	TRUE	AluSp	SINE,Alu
chr1	45244411	C	A	0.00656	RPS8	+	FALSE
chr3	113528895	A	T	0.00191	ATP6V1A	+	FALSE	AluSp	SINE,Alu
chr1	10520532	T	C	0.00150		.	FALSE	AluSx1	SINE,Alu
chr1	46033497	T	C	0.00719	AKR1A1	+	FALSE	AluYk3	SINE,Alu
chr3	196662641	T	C	0.00059	NCBP2	-	FALSE
chr1	33149496	A	G	0.00504	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	45975498	A	G	0.00018	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr2	191067764	A	T	0.00165	C2orf88	+	FALSE
chr5	65120054	C	T	0.00625	NLN	+	FALSE
chr1	214529742	T	C	6.22071E-05	PTPN14	-	TRUE
chr3	119545349	T	C	0.00805	GSK3B	-	FALSE
chr1	19984346	A	G	0.00071	MINOS1-NBL1,NBL1	+	FALSE
chr4	56295160	T	A	0.00187	CLOCK	-	FALSE	(T)n	SINE,Alu
chr1	226589958	G	A	0.00613	PARP1	-	FALSE
chr1	2303094	T	C	0.00113	MORN1	-	TRUE	AluSp	SINE,Alu
chr1	235383188	A	G	0.00531	ARID4B	-	FALSE
chr6	33269307	T	C	0.00645		.	FALSE	AluSx	SINE,Alu
chrX	16781156	A	G	0.00061		.	FALSE	AluJo	SINE,Alu
chr1	16889864	C	A	6.58858E-05	NBPF1	-	FALSE
chr1	16946336	G	A	0.00409	CROCCP2	-	FALSE
chr1	54691922	T	A	0.00067	SSBP3	-	FALSE
chr2	242176182	G	A	2.43141E-09	HDLBP	-	FALSE
chr17	46803538	C	T	0.00492	HOXB13	-	FALSE
chr10	89623858	G	C	0.00086	PTEN	+	FALSE	(CGG)n	SINE,Alu
chr1	179045672	G	A	0.00920	FAM20B	+	FALSE
chr7	17384818	A	G	0.00241	AHR	+	TRUE	AluSc	SINE,Alu
chr2	86731290	T	C	0.00149	CHMP3,RNF103-CHMP3	-	FALSE	L1MC1	SINE,Alu
chr3	42591446	A	G	0.00012	SEC22C	-	FALSE
chr1	109535117	C	T	0.00211	WDR47	-	FALSE
chr1	183218868	T	G	0.00091	NMNAT2	-	FALSE
chr14	75202288	C	T	0.00706	FCF1	+	FALSE	AluSc	SINE,Alu
chr1	10517659	T	C	0.00012		.	FALSE	AluSx1	SINE,Alu
chr1	109351501	A	G	0.00921	STXBP3	+	FALSE
chr6	42047404	A	G	0.00182	TAF8	+	TRUE	AluSz6	SINE,Alu
chr1	150771703	T	C	0.00500	CTSK	-	FALSE
chr1	11347154	A	T	0.00366	UBIAD1	+	FALSE
chr2	152132130	A	G	0.00071	NMI	-	FALSE
chr1	47905555	A	C	0.00661	FOXD2	+	FALSE
chr1	6283292	T	C	0.00993	ICMT	-	TRUE	AluSx3	SINE,Alu
chr2	86249840	T	C	0.00482	LOC90784	-	TRUE	AluJr	SINE,Alu
chrX	77084038	T	C	0.00265	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	9162348	T	C	0.00359		.	FALSE	AluSx	SINE,Alu
chr1	20977599	C	G	0.00489	PINK1,PINK1-AS	+,-	FALSE
chr1	10520258	T	C	0.00396		.	FALSE	AluSx	SINE,Alu
chr1	20826083	G	A	0.00289	MUL1	-	FALSE
chr1	154323557	C	T	0.00018	ATP8B2	+	FALSE
chr1	204526631	A	G	0.00536	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	120612194	C	G	0.00561	NOTCH2	-	FALSE	(CCG)n	SINE,Alu
chr1	33149496	A	G	0.00662	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	171501831	A	G	0.00040	PRRC2C	+	FALSE
chr4	7764148	G	A	2.22190E-11	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	8413317	A	C	0.00957	RERE	-	FALSE
chr15	90820083	A	G	4.07036E-06		.	FALSE	AluY	SINE,Alu
chr1	173834149	A	C	0.00265	GAS5	-	FALSE	AluSz	SINE,Alu
chr9	130268407	C	G	0.00902	FAM129B	-	FALSE	(CTCA)n	SINE,Alu
chr1	117532790	C	T	0.00981	PTGFRN	+	FALSE
chr2	61277775	A	G	0.00640	PEX13	+	TRUE	AluY	SINE,Alu
chr10	77807027	T	C	0.00089	C10orf11	+	FALSE
chr10	121437033	T	G	0.00357	BAG3	+	FALSE
chr1	36755235	A	G	0.00562	THRAP3	+	FALSE
chr3	75475670	A	C	0.00506	FAM86DP	-	FALSE
chr1	23408016	C	A	4.80633E-05	KDM1A	+	FALSE
chr14	53109823	T	C	2.25911E-06	ERO1A	-	TRUE	MER53	SINE,Alu
chr1	46032311	A	G	0.00043	AKR1A1	+	FALSE
chr1	146495576	G	C	0.00107	LOC728989	-	FALSE
chr1	179045500	C	A	0.00043	FAM20B	+	FALSE
chr5	75469427	G	A	0.00155	SV2C	+	FALSE
chr1	17733268	T	C	0.00472	RCC2	-	FALSE
chr5	149364144	A	G	0.00014	SLC26A2	+	TRUE	AluSc8	SINE,Alu
chr6	42857179	C	A	0.00492	RPL7L1	+	FALSE	AluSp	SINE,Alu
chr17	65334868	T	C	0.00096	PSMD12	-	TRUE	AluSq	SINE,Alu
chr4	42003671	A	G	0.00535	SLC30A9	+	FALSE
chr14	53243434	T	C	0.00421	GNPNAT1	-	TRUE	AluSx3	SINE,Alu
chr1	145512081	A	G	0.00579	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr3	45153708	G	A	4.36430E-08	CDCP1	-	FALSE
chr4	128756579	A	G	0.00501		.	FALSE	AluSx	SINE,Alu
chr2	36776053	T	C	0.00029	CRIM1	+	FALSE
chr3	196729939	C	T	0.00862	MELTF,MFI2-AS1	+,-	FALSE	G-rich	SINE,Alu
chr3	197611106	A	G	0.00137		.	FALSE	AluSx1	SINE,Alu
chr2	37330431	T	C	0.00231		.	FALSE	AluSq2	SINE,Alu
chr3	194789663	T	C	0.00754	XXYLT1	-	FALSE	MARNA	SINE,Alu
chr1	46075604	A	G	0.00155	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	36024788	C	T	5.60663E-14	NCDN	+	FALSE
chr1	10519982	T	C	3.22355E-05		.	FALSE	AluJr	SINE,Alu
chr7	20177613	T	C	0.00913	MACC1,LOC101927668	-	TRUE	AluSx	SINE,Alu
chr20	18468633	C	A	3.51877E-10	RBBP9	-	FALSE
chr4	1006333	G	A	0.00117	FGFRL1	+	FALSE	(CTG)n	SINE,Alu
chr1	93804952	G	A	0.00421	CCDC18-AS1	-	FALSE
chr2	20401856	T	G	0.00265	SDC1	-	FALSE
chr6	3022544	T	C	0.00440	HTATSF1P2	-	TRUE	AluJr	SINE,Alu
chr1	142688597	C	T	0.00605		.	FALSE
chr2	37329352	T	C	0.00403		.	FALSE	AluJr4	SINE,Alu
chr1	45976257	C	A	0.00015	MMACHC	+	FALSE
chr2	37331065	T	C	0.00527		.	FALSE	AluSx1	SINE,Alu
chr16	88785189	T	C	0.00636	PIEZO1	-	TRUE	AluJr	SINE,Alu
chr1	70718278	C	G	0.00663		.	FALSE
chr7	143003523	T	G	2.48474E-05	CASP2	+	FALSE	AluY	SINE,Alu
chr4	52753346	A	G	0.00782	DCUN1D4	+	TRUE	AluSc	SINE,Alu
chr7	131241085	G	A	0.00600	PODXL	-	FALSE	(GCA)n	SINE,Alu
chr2	128949342	A	G	0.00397	UGGT1	+	TRUE	AluSg	SINE,Alu
chr1	115313038	G	A	0.00144	SIKE1	-	FALSE
chr5	32601672	A	T	0.00563	SUB1	+	FALSE
chr1	28661767	A	G	0.00242	MED18	+	TRUE	AluSg	SINE,Alu
chr1	26608012	C	A	0.00564	SH3BGRL3	+	FALSE
chr1	10520683	T	C	0.00457	DFFA	-	TRUE	AluSc8	SINE,Alu
chr19	13883923	A	G	0.00493	MRI1	+	TRUE	AluSz	SINE,Alu
chr11	76736712	A	G	0.00027	ACER3	+	TRUE	AluSz	SINE,Alu
chr1	16927391	T	C	0.00110	NBPF1	-	FALSE
chr1	148752615	C	A	0.00042		.	FALSE
chr2	9629954	T	C	0.00308	ADAM17	-	FALSE
chr1	203711876	G	A	0.00444	ATP2B4	+	FALSE
chr1	1018144	T	C	0.00019	C1orf159	-	FALSE
chr1	144852203	T	G	0.00029	NBPF20,PDE4DIP	+,-	FALSE
chr1	142700116	C	T	0.00081	ANKRD20A12P	-	FALSE
chr17	53470462	C	T	0.00230	MMD	-	FALSE
chr3	11598816	C	A	0.00118	ATG7,VGLL4	+,-	FALSE
chr1	109465170	T	C	0.00565	GPSM2	+	FALSE
chr4	2940085	T	C	8.20099E-05	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	28661656	A	G	0.00026	MED18	+	TRUE	AluSg	SINE,Alu
chr14	24661020	C	T	0.00504	TM9SF1	-	FALSE	AluJb	SINE,Alu
chr1	200522058	T	A	0.00209	KIF14	-	FALSE	AluSg	SINE,Alu
chr4	103183510	C	T	0.00718	SLC39A8	-	FALSE
chr1	19411087	C	T	0.00226	UBR4	-	FALSE
chr1	155230131	C	T	0.00829	SCAMP3	-	FALSE
chr7	100957851	T	C	0.00028	LOC101927746,IFT22	+,-	FALSE	MADE1	SINE,Alu
chr2	232319499	T	A	0.00165	NCL	-	FALSE
chr1	9163393	T	C	0.00327		.	FALSE	AluSp	SINE,Alu
chr1	1419700	A	G	0.00464	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr2	102484482	G	A	0.00213	MAP4K4	+	FALSE
chr1	10517314	T	C	0.00802		.	FALSE	AluJr	SINE,Alu
chr4	88814756	C	T	0.00145		.	FALSE
chr4	17802819	T	C	0.00112	DCAF16	-	TRUE	AluSz	SINE,Alu
chr2	10586904	C	T	0.00041	ODC1,SNORA80B	-	FALSE
chr3	47628808	A	T	0.00792	SMARCC1	-	FALSE
chr4	190864378	T	G	0.00247	FRG1	+	FALSE	GA-rich	SINE,Alu
chr5	81571669	C	T	0.00143	RPS23	-	FALSE
chr17	49042381	T	C	0.00931	SPAG9	-	TRUE	AluJb	SINE,Alu
chr1	3545191	C	T	5.51731E-05	TPRG1L	+	FALSE
chr5	184393	C	T	0.00228	PLEKHG4B	+	FALSE
chr3	10192825	A	G	0.00042	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	139233	C	A	0.00653	LOC729737	-	FALSE
chr1	33148251	A	G	0.00389	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr19	42375586	A	G	0.00404		.	FALSE	AluSx	SINE,Alu
chr1	10521170	T	C	0.00538	DFFA	-	TRUE	AluY	SINE,Alu
chr2	234775941	A	G	0.00161	MSL3P1	-	FALSE
chr9	132268359	A	G	0.00436	LINC00963	+	TRUE	AluJb	SINE,Alu
chr17	17425631	C	T	0.00036	PEMT	-	FALSE
chr1	27202963	C	T	0.00106		.	FALSE	AluSq2	SINE,Alu
chr6	107113953	C	G	0.00300	QRSL1	+	FALSE	AluSg	SINE,Alu
chr7	94060361	C	T	2.02320E-06	COL1A2	+	FALSE
chr3	158547143	G	A	0.00178	MFSD1	+	FALSE
chr1	21671943	T	G	0.00471	ECE1	-	FALSE	(GCTCCCG)n	SINE,Alu
chr1	46806550	C	T	0.00105	NSUN4	+	FALSE
chr1	12058869	C	T	0.00027	MFN2	+	FALSE
chr17	57656854	C	T	0.00928	DHX40	+	FALSE
chr3	62282907	C	T	9.50704E-05	PTPRG-AS1	-	FALSE
chr1	6159719	C	T	4.79205E-09	KCNAB2	+	FALSE
chr3	48894565	T	A	0.00142	SLC25A20	-	FALSE
chr9	70483778	A	T	0.00026	CBWD5	-	FALSE
chr2	55462102	A	G	0.00026	RPS27A	+	FALSE
chr3	181430454	G	A	0.00577	SOX2-OT,SOX2	+	FALSE
chr1	31732602	C	A	0.00148	SNRNP40	-	FALSE
chr16	1727060	G	A	0.00922	CRAMP1	+	FALSE
chr19	36260451	A	G	0.00854		.	FALSE	AluY	SINE,Alu
chr2	206987731	T	C	0.00731		.	FALSE	AluJb	SINE,Alu
chr1	26901090	C	T	0.00952	RPS6KA1	+	FALSE
chr1	44818525	T	C	0.00235	ERI3	-	FALSE
chr14	68117864	A	T	0.00744	ARG2	+	FALSE
chr2	67631831	G	A	0.00423	ETAA1	+	FALSE
chr1	16893686	G	C	0.00138	NBPF1	-	FALSE
chr2	24223291	A	G	0.00512	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr12	9464178	G	A	0.00081	LOC642846	+	FALSE
chr2	37330172	T	G	0.00972		.	FALSE
chr1	150479901	C	T	0.00228	TARS2	+	FALSE	AluSc8	SINE,Alu
chr2	239972080	T	A	0.00136	HDAC4	-	FALSE
chr1	14590	G	A	0.00050	WASH7P	-	FALSE
chr5	179048585	T	C	0.00150	HNRNPH1	-	FALSE
chr7	22983600	T	C	0.00025	FAM126A	-	FALSE
chr7	120740103	G	T	0.00601	CPED1	+	FALSE
chr22	41252612	G	A	0.00561	ST13	-	FALSE
chr1	2160988	G	A	0.00137	SKI	+	FALSE
chr13	47325380	G	A	0.00270	LRCH1	+	FALSE
chr1	53680090	G	A	0.00321	C1orf123	-	FALSE
chr1	110950295	C	A	0.00359	LAMTOR5	-	FALSE
chr1	225678910	T	C	2.51322E-05	ENAH	-	TRUE	AluSx1	SINE,Alu
chr1	9740896	C	T	0.00078	PIK3CD,PIK3CD-AS2	+,-	FALSE	MLT1F1	SINE,Alu
chr1	1345006	A	G	1.26297E-06		.	FALSE	AluSg	SINE,Alu
chr1	6161107	A	T	0.00218	KCNAB2	+	FALSE
chr1	179829200	T	C	0.00497	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr1	144606996	G	C	0.00107	NBPF20	+	FALSE
chr1	10521237	T	C	0.00348	DFFA	-	TRUE	AluY	SINE,Alu
chr1	19586532	A	G	0.00166	MRTO4	+	TRUE	AluSz	SINE,Alu
chr5	149363219	A	G	0.00866	SLC26A2	+	FALSE	AluJr	SINE,Alu
chr1	38423055	C	A	0.00015	SF3A3	-	FALSE
chr3	120046117	G	T	0.00443	LRRC58	-	FALSE	AluYi6	SINE,Alu
chr1	144822330	C	T	6.80810E-06	NBPF20,NBPF9	+	FALSE
chr1	183218870	G	T	0.00338	NMNAT2	-	FALSE
chr1	146650289	C	T	0.00967	PDIA3P1	+	FALSE
chr6	13788297	T	C	0.00979	MCUR1	-	TRUE	AluSx	SINE,Alu
chr4	190883001	C	G	0.00319	FRG1	+	FALSE
chr1	39988084	G	A	0.00060	BMP8A,PPIEL	+,-	FALSE
chr2	191555984	T	A	0.00171	NAB1	+	FALSE
chr1	22419433	T	G	0.00200	CDC42	+	FALSE
chr1	207942472	A	G	2.11430E-05	CD46	+	TRUE	AluSg4	SINE,Alu
chr2	36777209	T	C	0.00299	CRIM1	+	FALSE	(TG)n	SINE,Alu

RBP	TARDBP
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR455TNF
Platform	HiSeq
Pubmed ID	32252787

TARDBP - Target Gene Network