RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr4	6644273	C	G	0.00000	MRFAP1	+	FALSE
chr5	177019196	G	C	0.00509	TMED9	+	FALSE	(GCG)n	SINE,Alu
chr1	182569318	G	T	0.00829	RGS16	-	FALSE
chr12	125512494	A	G	0.00427		.	FALSE	AluY	SINE,Alu
chr4	100869246	T	C	0.00444	H2AFZ	-	FALSE
chr1	20945264	A	C	0.00605	CDA	+	FALSE
chr1	74672474	G	A	0.00150	FPGT-TNNI3K,FPGT	+	FALSE	X12_DNA	SINE,Alu
chr14	20770036	T	C	0.00217	TTC5	-	FALSE
chr7	158719116	A	G	0.00824	WDR60	+	FALSE
chr5	151041876	G	T	5.29152E-05	SPARC	-	FALSE
chr6	42856978	A	G	0.00819	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr2	55516937	G	T	0.00250	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr5	43377390	T	C	0.00062	CCL28	-	TRUE	AluSz	SINE,Alu
chr2	54120820	G	A	0.00262	PSME4	-	FALSE
chr1	113672634	A	G	0.00967		.	FALSE	AluJb	SINE,Alu
chr19	46053370	T	C	0.00045	OPA3	-	TRUE	AluSx1	SINE,Alu
chr1	24086788	C	T	0.00040	TCEB3	+	FALSE
chr1	10042987	A	G	3.47016E-05	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr6	37142192	C	T	0.00850	PIM1	+	FALSE
chr19	9672346	T	C	0.00222		.	FALSE	AluJr	SINE,Alu
chr2	61764916	A	C	0.00189	XPO1	-	FALSE	(AC)n	SINE,Alu
chr7	5107572	A	C	0.00563	RBAK-RBAKDN,RBAK	+	FALSE	L1ME3A	SINE,Alu
chr1	184762676	T	C	0.00720	FAM129A	-	TRUE	AluSz	SINE,Alu
chr4	129924977	C	A	0.00760	SCLT1	-	FALSE
chr2	88895123	T	C	0.00706	EIF2AK3	-	FALSE
chr2	198339559	G	T	0.00712	COQ10B	+	FALSE
chr1	204526660	A	G	0.00478	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	118502767	G	A	0.00624	WDR3,SPAG17	+,-	FALSE	(GT)n	SINE,Alu
chr7	2290637	C	T	0.00956	NUDT1	+	FALSE
chr1	10519982	T	C	0.00129		.	FALSE	AluJr	SINE,Alu
chr2	48025764	C	T	0.00810	MSH6	+	FALSE
chr3	14183410	T	C	1.62266E-06	TMEM43	+	FALSE
chr1	27662235	G	T	0.00766	TMEM222	+	FALSE
chr1	3545194	C	G	0.00254	TPRG1L	+	FALSE
chr1	40537918	T	A	0.00773	CAP1	+	FALSE
chr1	117078729	A	G	0.00983	CD58	-	FALSE
chr3	9833986	C	T	2.34147E-05	TADA3	-	FALSE
chr5	130538076	A	G	0.00045	LYRM7	+	TRUE	AluSp	SINE,Alu
chr22	18571431	A	G	0.00158	PEX26	+	TRUE	AluSz	SINE,Alu
chr1	11347150	C	A	0.00016	UBIAD1	+	FALSE
chr1	200521297	C	T	0.00133	KIF14	-	FALSE	(T)n	SINE,Alu
chr2	206988452	A	T	0.00669	NDUFS1	-	FALSE
chr1	145512151	C	A	0.00723	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr4	39552022	T	C	0.00015	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr1	28920823	A	G	0.00850	RAB42	+	FALSE	AluSx	SINE,Alu
chr1	179843725	T	C	0.00028	TOR1AIP2	-	TRUE	AluJb	SINE,Alu
chr1	23409538	G	A	0.00464	KDM1A	+	FALSE
chr7	56131098	T	A	0.00950	CCT6A	+	FALSE	L1M5	SINE,Alu
chr1	45279813	T	C	0.00614		.	FALSE	(TCTT)n	SINE,Alu
chr7	30634661	C	G	3.93145E-07	GARS	+	FALSE
chr1	225684742	T	C	0.00518	ENAH	-	FALSE
chr1	19542463	T	C	0.00447	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr2	232028396	A	G	0.00701	PSMD1	+	FALSE
chr11	68523055	T	C	0.00524	CPT1A	-	TRUE	AluY	SINE,Alu
chr3	12641718	G	A	0.00091	RAF1	-	FALSE
chr1	32801694	A	C	0.00847	MARCKSL1	-	FALSE
chr2	37330507	T	C	9.86666E-05		.	FALSE	AluSq2	SINE,Alu
chr20	309186	A	G	0.00665	SOX12	+	FALSE	A-rich	SINE,Alu
chr12	69237042	A	G	0.00413	MDM2	+	TRUE
chr1	115259341	A	C	2.70927E-07	NRAS	-	FALSE
chr1	113247898	G	A	0.00077	RHOC	-	FALSE
chr1	145513016	A	G	0.00069	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	6583701	T	C	0.00029	NOL9	-	FALSE
chr1	213069783	A	G	0.00600	FLVCR1	+	FALSE
chr3	148748257	C	G	0.00989	HLTF	-	FALSE
chr1	6283306	T	C	0.00609	ICMT	-	TRUE	AluSx3	SINE,Alu
chr17	65334802	T	C	1.10547E-05	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	931939	G	A	0.00428		.	FALSE
chr3	24019990	A	G	0.00308	NR1D2	+	FALSE
chr3	100043289	C	T	0.00049	TBC1D23	+	FALSE
chr7	75045694	C	T	1.64957E-05	NSUN5P1	+	FALSE
chr3	149686507	T	C	0.00193	PFN2	-	FALSE
chr10	16554732	T	A	0.00706	PTER	+	FALSE
chr1	45280426	A	G	0.00802		.	FALSE	AluSx	SINE,Alu
chr1	173457017	C	T	0.00036	PRDX6	+	FALSE
chr17	65334967	T	C	0.00045	PSMD12	-	TRUE	AluSq	SINE,Alu
chr19	53914448	A	G	0.00583	ZNF765	+	TRUE	AluSx	SINE,Alu
chr1	201846675	C	T	0.00145	IPO9	+	FALSE
chr6	33679439	A	C	0.00192	UQCC2	-	FALSE
chr20	62572487	A	C	0.00390	UCKL1	-	FALSE
chr1	6583066	T	C	0.00088	NOL9	-	TRUE	AluSx4	SINE,Alu
chr2	37329352	T	C	0.00403		.	FALSE	AluJr4	SINE,Alu
chr6	74346347	A	G	4.16931E-07	SLC17A5	-	FALSE
chr1	32372360	C	T	0.00697	PTP4A2	-	FALSE	(CA)n	SINE,Alu
chr1	11710798	T	G	0.00328	FBXO2	-	FALSE	(CCT)n	SINE,Alu
chr1	224621934	G	C	0.00245	WDR26	-	FALSE	(GGA)n	SINE,Alu
chr2	36776053	T	C	0.00029	CRIM1	+	FALSE
chr1	183876182	C	T	0.00494	RGL1	+	FALSE
chr2	54858511	C	T	0.00124	SPTBN1	+	FALSE
chr1	204524457	A	G	6.02506E-06	MDM4	+	TRUE	AluY	SINE,Alu
chr3	33430397	C	T	0.00171	UBP1	-	FALSE
chr5	128430757	T	C	0.00338	ISOC1	+	FALSE
chr2	55516911	A	G	0.00719	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr4	17804785	T	C	0.00083	DCAF16	-	TRUE	AluSx	SINE,Alu
chr5	77655392	T	C	0.00080	SCAMP1-AS1	-	TRUE	AluSx4	SINE,Alu
chr7	112579815	G	T	0.00997	BMT2	-	FALSE	(CGC)n	SINE,Alu
chr8	48890109	A	G	0.00750	MCM4	+	TRUE	AluJb	SINE,Alu
chr11	76736712	A	G	0.00027	ACER3	+	TRUE	AluSz	SINE,Alu
chr5	122165503	A	T	0.00170	SNX2	+	FALSE	(AC)n	SINE,Alu
chr1	11347154	A	T	0.00441	UBIAD1	+	FALSE
chr4	57326291	A	G	0.00415	PAICS	+	TRUE	AluJr	SINE,Alu
chr2	198339541	C	T	0.00465	COQ10B	+	FALSE	(T)n	SINE,Alu
chr9	136209399	A	T	0.00011	MED22	-	FALSE
chr1	207942427	A	G	0.00822	CD46	+	TRUE	AluSg4	SINE,Alu
chr7	137561084	G	A	0.00194	CREB3L2	-	FALSE	(GT)n	SINE,Alu
chr1	45975673	A	G	0.00410	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	762109	C	T	0.00026	LINC00115	-	FALSE
chr15	59952905	A	G	0.00150	BNIP2	-	FALSE
chr1	67468124	G	C	0.00201	SLC35D1	-	FALSE
chr4	2940347	T	C	1.36349E-05	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	46126142	G	C	0.00171	GPBP1L1	-	FALSE
chr20	18468633	C	A	3.51877E-10	RBBP9	-	FALSE
chr1	109855150	A	C	0.00251	SORT1	-	FALSE	A-rich	SINE,Alu
chr3	124948047	C	G	0.00285	ZNF148	-	FALSE
chr3	196670082	A	T	0.00261	NCBP2-AS2	+	FALSE
chr19	19791273	A	G	0.00121	ZNF101	+	TRUE	AluSq2	SINE,Alu
chr1	110049203	G	C	0.00209		.	FALSE
chr1	145281633	C	A	0.00022	NBPF20,NOTCH2NL	+	FALSE
chr17	65334766	T	C	4.45484E-05	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	154554965	G	A	0.00019	ADAR	-	FALSE
chr3	12628920	G	C	0.00036	RAF1	-	FALSE
chr1	9663444	C	T	0.00140	TMEM201	+	FALSE
chr1	36068237	T	C	0.00075	PSMB2	-	TRUE	AluSc	SINE,Alu
chrX	2825075	T	C	0.00410	ARSD	-	TRUE	AluSx1	SINE,Alu
chr8	71550832	T	C	0.00725	LACTB2-AS1,LACTB2	+,-	FALSE
chr5	118175182	T	C	0.00205	DTWD2	-	TRUE	AluJr	SINE,Alu
chr2	109301897	T	C	0.00306	LIMS1	+	FALSE
chr3	109049177	A	T	0.00044	DPPA4	-	FALSE	AluSp	SINE,Alu
chr4	89181477	T	C	7.00483E-05	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr3	10192826	A	G	0.00037	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	45976261	T	A	0.00018	MMACHC	+	FALSE
chr1	184675814	G	A	0.00730	EDEM3	-	FALSE
chr1	162497663	G	A	0.00365	UHMK1	+	FALSE
chr1	36527402	A	T	0.00278		.	FALSE
chr1	1653046	T	A	0.00986	CDK11B,CDK11A	-	FALSE
chr12	120899168	A	G	6.24570E-05	GATC	+	TRUE	AluJr	SINE,Alu
chr3	183533964	T	C	2.38465E-05	MAP6D1	-	FALSE
chr1	6282324	T	C	0.00142	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	113455427	T	A	0.00814	SLC16A1	-	FALSE
chr1	19585771	A	G	0.00029	MRTO4	+	FALSE	AluSc8	SINE,Alu
chr1	35658211	G	T	1.28982E-07	SFPQ	-	FALSE
chr6	42855182	A	G	0.00583	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr7	116339672	C	T	0.00876	MET	+	FALSE
chr1	100490275	A	G	0.00748	SLC35A3	+	TRUE	AluSc5	SINE,Alu
chr1	10517567	T	C	9.16527E-06		.	FALSE	AluSx1	SINE,Alu
chr1	101442569	C	A	0.00567	SLC30A7	+	FALSE
chr1	10518797	T	C	0.00148		.	FALSE	AluSx1	SINE,Alu
chr4	25749191	T	C	0.00301	SEL1L3	-	FALSE
chr1	16889413	T	C	8.21040E-06	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr17	10578246	A	G	0.00093		.	FALSE
chr15	42503335	T	C	0.00023	TMEM87A	-	FALSE	(T)n	SINE,Alu
chr2	204162036	A	G	0.00369	CYP20A1	+	TRUE	AluSx	SINE,Alu
chr1	144917546	A	G	0.00614	NBPF20,PDE4DIP	+,-	FALSE
chr7	102089261	A	G	0.00028	ORAI2	+	TRUE	AluSq2	SINE,Alu
chr5	40831098	T	C	3.69541E-05		.	FALSE	AluSx3	SINE,Alu
chr1	6582353	T	C	0.00415	NOL9	-	TRUE	AluSx1	SINE,Alu
chr11	8707396	C	A	0.00081	RPL27A	+	FALSE
chr2	208620129	A	G	0.00167	CCNYL1	+	TRUE	EutTc1-N1	SINE,Alu
chr2	61416403	T	G	0.00350	USP34	-	FALSE	AluSc8	SINE,Alu
chr1	567191	C	T	0.00428		.	FALSE
chr13	111301048	T	C	0.00037	CARS2	-	FALSE
chr4	17804847	T	C	0.00306	DCAF16	-	TRUE	AluSx	SINE,Alu
chr1	29519595	T	C	0.00208	MECR	-	TRUE	AluJb	SINE,Alu
chr1	10517958	G	A	0.00149		.	FALSE
chr1	6283306	T	C	0.00275	ICMT	-	TRUE	AluSx3	SINE,Alu
chr3	169810385	C	T	0.00621	PHC3	-	FALSE
chr1	151742798	T	C	0.00626	OAZ3	+	FALSE
chr1	27861184	G	T	0.00425	AHDC1	-	FALSE	(TCTTTT)n	SINE,Alu
chr1	19543361	A	T	0.00076	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	6282371	T	C	0.00054	ICMT	-	TRUE	AluSz	SINE,Alu
chr12	1611799	A	G	0.00156	LINC00942	+	FALSE
chr2	36704034	A	G	9.89157E-05	CRIM1	+	FALSE
chr1	36794266	A	G	0.00141		.	FALSE	AluJb	SINE,Alu
chr2	113962806	A	G	0.00309		.	FALSE	AluSz	SINE,Alu
chr21	44331718	A	G	0.00410		.	FALSE	AluJb	SINE,Alu
chr1	145273345	T	C	0.00133	NBPF20,NOTCH2NL	+	FALSE
chr4	42022464	C	A	0.00438	SLC30A9	+	FALSE
chr9	102977295	C	T	3.70755E-05	INVS	+	FALSE	HERVL40-int	SINE,Alu
chr11	65404870	C	T	0.00160	PCNX3	+	FALSE
chr1	16952481	A	G	5.15865E-05	CROCCP2	-	FALSE
chr2	217366803	A	G	0.00914		.	FALSE	AluSz6	SINE,Alu
chr1	11298093	C	T	1.54321E-14	MTOR	-	FALSE
chr6	41900765	A	G	0.00256	BYSL	+	FALSE
chr2	8823951	A	T	0.00251	ID2	+	FALSE
chr2	102508655	G	T	0.00817	MAP4K4	+	FALSE
chr1	1252687	T	C	0.00459	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr5	31553968	T	C	0.00555	C5orf22	+	FALSE
chr1	16912014	A	C	0.00704	NBPF1	-	FALSE
chr1	148951398	C	T	0.00068	LOC645166	+	FALSE
chr5	55235967	A	G	0.00639	IL6ST	-	FALSE	(AT)n	SINE,Alu
chr12	93192790	G	T	0.00161	EEA1	-	FALSE
chr1	10521238	T	C	0.00797	DFFA	-	TRUE	AluY	SINE,Alu
chr14	23441535	A	T	0.00879	AJUBA	-	FALSE	GA-rich	SINE,Alu
chr5	53841241	T	A	0.00372	SNX18	+	FALSE
chr3	15114318	T	C	0.00067	RBSN	-	TRUE	AluY	SINE,Alu
chr2	176790393	C	T	0.00282	LNPK	-	FALSE	AluSp	SINE,Alu
chr1	23409538	G	A	0.00292	KDM1A	+	FALSE
chr1	33149266	A	G	0.00292	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	19934838	C	T	2.17786E-05	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr1	19447843	C	G	0.00345	UBR4	-	FALSE
chr1	161141432	C	G	0.00508	B4GALT3	-	FALSE
chr3	179117128	T	C	0.00112	GNB4	-	TRUE	AluSz	SINE,Alu
chr5	14510067	G	T	0.00130	TRIO	+	FALSE
chr16	58054472	T	C	0.00530	USB1	+	FALSE
chr17	43248581	C	T	0.00012	LOC105371795	-	FALSE
chr1	172410967	G	A	1.85684E-05	C1orf105,PIGC	+,-	FALSE
chr5	37290397	T	C	0.00305		.	FALSE	AluSz	SINE,Alu
chr1	87379497	A	G	0.00067	SEP15	-	FALSE
chr1	120163518	C	T	0.00067	ZNF697	-	FALSE
chr1	180082702	G	C	0.00019	CEP350	+	FALSE
chr1	169101274	T	G	0.00026	ATP1B1	+	FALSE	(T)n	SINE,Alu
chr1	35649803	A	C	0.00659	SFPQ	-	FALSE
chr1	100654765	T	C	0.00254	DBT	-	TRUE	AluSz	SINE,Alu
chr4	185309400	T	A	0.00250	IRF2	-	FALSE	(GGGAT)n	SINE,Alu
chr1	203277244	A	G	0.00115	BTG2	+	FALSE
chr1	26801731	G	T	0.00146	HMGN2	+	FALSE	(T)n	SINE,Alu
chr1	144851999	A	C	0.00385	NBPF20,PDE4DIP	+,-	FALSE
chr1	53712570	A	C	0.00277	LRP8	-	FALSE	(CA)n	SINE,Alu
chr1	26143725	A	T	0.00116	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	569492	T	C	0.00743		.	FALSE
chr1	19198414	G	A	0.00028	ALDH4A1	-	FALSE
chr2	234438139	A	G	0.00220	USP40	-	FALSE
chr1	16912029	C	G	0.00831	NBPF1	-	FALSE
chr3	15114486	T	C	3.99101E-05	RBSN	-	TRUE	AluY	SINE,Alu
chr7	22984967	A	G	0.00108	FAM126A	-	FALSE
chr1	16889014	C	T	0.00722	NBPF1	-	FALSE
chr3	38296817	G	A	3.46922E-11	OXSR1	+	FALSE
chr1	45110404	C	T	0.00230	RNF220	+	FALSE
chr9	132575836	A	C	0.00546	TOR1A	-	FALSE
chr1	28836912	A	G	3.63020E-05	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr10	16554733	G	T	0.00706	PTER	+	FALSE
chr14	105676287	C	T	0.00036	BRF1	-	FALSE
chr1	95362514	G	T	0.00279	CNN3	-	FALSE
chr1	100489297	G	C	0.00669	SLC35A3	+	FALSE	AluSc	SINE,Alu
chr1	1255400	T	C	0.00224	CPSF3L	-	FALSE
chr1	3546137	A	C	0.00778	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr1	949608	G	A	0.00416	ISG15	+	FALSE
chr1	153609268	G	A	0.00263	CHTOP	+	FALSE
chr1	205738843	C	T	0.00072	RAB29	-	FALSE	AluSz6	SINE,Alu
chr5	6633042	C	T	0.00348	NSUN2	-	FALSE
chr1	62628443	A	G	0.00359	PATJ	+	TRUE	AluSg4	SINE,Alu
chr2	113334414	A	G	0.00281	POLR1B	+	TRUE	AluSz	SINE,Alu
chr1	211918115	C	T	0.00979	LPGAT1	-	FALSE	MER63D	SINE,Alu
chr1	87213182	A	T	0.00072	SH3GLB1	+	FALSE
chr1	145290874	C	T	0.00380	NBPF20	+	FALSE
chr1	142804471	C	G	0.00555		.	FALSE	MIRb	SINE,Alu
chr1	6583457	T	C	0.00075	NOL9	-	TRUE	AluSq	SINE,Alu
chr1	45452227	G	C	0.00084	EIF2B3	-	FALSE
chr1	145512950	A	G	2.03454E-08	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr5	139931633	C	A	0.00014	SRA1	-	FALSE
chr1	31344628	T	A	0.00085	SDC3	-	FALSE

RBP	DDX47
Knock-Method	shRNA
RBP Family	DEAD
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR155EZL
Platform	HiSeq
Pubmed ID	32252787

DDX47 - Target Gene Network