Dataset Overview
RBPRBM15
Knock-MethodshRNA
RBP FamilyRRM_1
Biosample NameHepG2
Tissue TypeLiver
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR599PXD
PlatformHiSeq
Pubmed ID32252787

RBM15 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of RBM15
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of RBM15


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr192862804AG0.00043.FALSEAluJrSINE,Alu
chr1757279281AG0.00918PRR11+TRUEAluSq2SINE,Alu
chr167874696TC0.00839SERBP1-TRUEAluSx3SINE,Alu
chr110521238TC0.00232DFFA-TRUEAluYSINE,Alu
chr936216895TC0.00130GNE-TRUEAluYSINE,Alu
chr220097874TC0.00769TTC32-FALSE
chr398517013TC1.12976E-12DCBLD2-FALSE
chr132742441GA2.83845E-11LCK+FALSE
chr1241796950CA1.24743E-05OPN3,CHML-FALSE
chr12125269475TC0.00184SCARB1-FALSE
chr131345067GT0.00804SDC3-FALSE
chr1566791657GT0.00422RPL4-FALSE
chr9140709880CT0.00178EHMT1+FALSE
chr2206983255TC0.00246.FALSEAluJbSINE,Alu
chr1227574427AG7.32829E-06ARNTL2,ARNTL2-AS1+,-FALSEAluSzSINE,Alu
chr116890286CT3.65680E-06NBPF1-FALSE
chr5177576463AT0.00554.FALSE
chr2203741065TC2.92684E-06.FALSE
chr274442550AT0.00826.FALSE
chr4103809241AT0.00073CISD2,SLC9B1+,-FALSE
chr76370194CT0.00029FAM220A-FALSE
chr126226610CT0.00955STMN1-FALSE
chr312624321AG2.86985E-06MKRN2+FALSE
chr1610624967TC0.00013EMP2-TRUEAluSx3SINE,Alu
chr1118167515CT4.87028E-05FAM46C+FALSE
chr5115165591TC0.00407ATG12-TRUEAluSq2SINE,Alu
chr153716416GA0.00967LRP8-FALSE
chr1110566210TA0.00832AHCYL1+FALSE
chr1179045672GA0.00411FAM20B+FALSE
chr11650807TC0.00096CDK11B,CDK11A-FALSE
chr489180334TC0.00224PPM1K-TRUEAluSx4SINE,Alu
chr310191943GA2.29886E-07VHL+FALSE
chr1143399333TA0.00339.FALSEL1MC4SINE,Alu
chr2232319578CA0.00844NCL-FALSEA-richSINE,Alu
chr13730400TC0.00894CEP104-TRUEAluSx3SINE,Alu
chr1150619971GA0.00126GOLPH3L-FALSEAluJoSINE,Alu
chr291843471CT0.00105LOC654342-FALSE
chr1942375586AG0.00016.FALSEAluSxSINE,Alu
chr138423184CT4.70100E-06SF3A3-FALSEAluJoSINE,Alu
chr811701485TC0.00027CTSB-TRUEAluSx1SINE,Alu
chr1145369709AG0.00258NBPF20,NBPF10+TRUEL1MC4SINE,Alu
chr3179042910AG0.00061ZNF639+TRUEAluSpSINE,Alu
chr7129472333CT0.00670UBE2H-FALSE(CA)nSINE,Alu
chr1144828707GT0.00504NBPF20,NBPF9+FALSE
chr1545775144TC0.00867SLC30A4-TRUEAluJrSINE,Alu
chr568850966GT0.00134OCLN+FALSEAluSx4SINE,Alu
chr1116243380GA0.00426CASQ2-FALSE
chr116575726TC0.00916FBXO42-FALSE
chr637138022CG0.00953PIM1+FALSE
chr765618876AG0.00817CRCP+TRUEAluSx3SINE,Alu
chr1120539691GT0.00350NOTCH2-FALSE
chr128826130AG1.79185E-05PHACTR4+TRUEAluJbSINE,Alu
chr841399912CA0.00056LOC102723729,GINS4+,-FALSEAluSx3SINE,Alu
chr417802824TC0.00594DCAF16-TRUEAluSzSINE,Alu
chr1148003752TC3.77288E-10NBPF8-TRUEL1MC4SINE,Alu
chr632789807CT0.00281.FALSE
chrX123046695AG0.00054XIAP+TRUEAluSzSINE,Alu
chr7129472335TC0.00420UBE2H-FALSE(CA)nSINE,Alu
chr565120054CT0.00625NLN+FALSE
chr625986717AG0.00217TRIM38+TRUEAluJbSINE,Alu
chr146075171AC0.00140NASP+FALSEA-richSINE,Alu
chr265496187GA0.00103ACTR2+FALSE
chr717384395AG0.00856AHR+TRUEAluSxSINE,Alu
chr842043493GA0.00045PLAT-FALSEMLT2C1SINE,Alu
chr1142619487AG0.00511.FALSE
chr1829410068CT0.00807TRAPPC8-FALSE
chr126755136AG0.00279LIN28A+FALSEAluSx1SINE,Alu
chr1956090351CT1.52943E-09ZNF579-FALSE
chr937503490AG0.00612POLR1E+TRUEAluJbSINE,Alu
chr5154196577CT0.00906LARP1+FALSE
chr16582527TC0.00139NOL9-TRUEAluSx1SINE,Alu
chr7129472357AG0.00287UBE2H-FALSE
chr1165544381TC0.00433AP5B1-TRUEAluJbSINE,Alu
chr337366459CA2.94197E-05GOLGA4+FALSE
chr388104072TA0.00815CGGBP1-FALSE
chr176252687TC0.00021RABGGTB+FALSE
chr1540462780GA0.00251BUB1B+FALSE
chr119543361AT0.00076LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr634231301GC0.00772.FALSE
chr133086876TC0.00104ZBTB8OS-TRUEAluYSINE,Alu
chr314526656AG0.00189SLC6A6+FALSE
chr110520683TC0.00124DFFA-TRUEAluSc8SINE,Alu
chr1145322843CT0.00428NBPF20,NBPF10+FALSE
chr127733305AC0.00374WASF2-FALSE
chr812052756TC0.00984.FALSE
chr125894468CG0.00265LDLRAP1+FALSEMIRbSINE,Alu
chr1176733943AG0.00925ACER3+FALSEA-richSINE,Alu
chr126840209GA0.00820COPS7A+FALSE
chr116890644CT0.00439NBPF1-FALSE
chr5125961534AG0.00233PHAX+TRUEAluSz6SINE,Alu
chr2197184321CT0.00923HECW2-FALSE
chr2180810264AT1.24157E-05CWC22-FALSE
chr5118174733TC0.00037DTWD2-TRUEAluYSINE,Alu
chr2217366195CA0.00929.FALSE
chr246852033AG0.00543CRIPT+FALSE
chr1161932324AG0.00356ATF6+FALSE
chr440138676AG0.00157N4BP2+FALSE
chr2109401259CT0.00889RANBP2+FALSE
chr122445725CG0.00913WNT4-FALSE
chr16282371TC0.00897ICMT-TRUEAluSzSINE,Alu
chr131905905GC0.00028SERINC2+FALSE
chr310192838AG1.36876E-05VHL+TRUEAluSx1SINE,Alu
chr1201846626CA0.00429IPO9+FALSE(CA)nSINE,Alu
chr1017275583TC0.00374VIM+FALSE
chr1203766872GA1.42518E-06ZC3H11A,ZBED6+FALSE
chr1241794056CA0.00753OPN3,CHML-FALSE
chr417803604TC0.00414DCAF16-TRUEAluYSINE,Alu
chr191990445AG0.00784CDC7+FALSELFSINE_VertSINE,Alu
chr10117823568TA0.00483GFRA1-FALSE(ATC)nSINE,Alu
chr1540954864AG0.00636KNL1+TRUE
chr153289688AG0.00069ZYG11B+TRUEAluSzSINE,Alu
chr341281388TG0.00720CTNNB1+FALSE
chr553840199GT0.00857SNX18+FALSE
chr11595527TC0.00139CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr1474431191AG0.00670ENTPD5-FALSE
chr116889985TC0.00778NBPF1-FALSE
chr110518821TC0.00277.FALSEAluSx1SINE,Alu
chr110520296TC0.00108.FALSEAluSxSINE,Alu
chr299813015AG0.00235MRPL30+TRUEAluJbSINE,Alu
chr110517512TC0.00646.FALSEAluSx1SINE,Alu
chr12125512516AG8.94889E-06.FALSEAluYSINE,Alu
chr237331037TC0.00026.FALSEAluSx1SINE,Alu
chr5125961447AG0.00242PHAX+TRUEAluSz6SINE,Alu
chr3142772593GA0.00135U2SURP+FALSE
chr11458255TG0.00438ATAD3A+FALSE
chr1151092839AG0.00135GABPB2+TRUEAluSpSINE,Alu
chr4190873405CT0.00325FRG1+FALSE
chr3169988286CT0.00029PRKCI+FALSE
chr197084578AG0.00346ZNF557+TRUEAluJbSINE,Alu
chr934088016GA0.00226DCAF12-FALSE
chr4141600320AG0.00179TBC1D9-FALSE
chr1179044100AG0.00081FAM20B+TRUEAluSxSINE,Alu
chr156961756AG0.00265PLPP3-FALSE
chr2198368113TA1.78788E-05HSPE1,HSPE1-MOB4+FALSE
chr175288084TA0.00232RABEP1+FALSE
chr1179042482AG0.00301FAM20B+TRUEAluSx1SINE,Alu
chr825272423GT0.00659DOCK5+FALSE
chr2203742126TC0.00451.FALSEAluJbSINE,Alu
chr237327589TC0.00253.FALSE
chr631595882CA0.00450.FALSE
chr786816663AG0.00103DMTF1+TRUEAluJrSINE,Alu
chr1075009721TC1.96034E-06DNAJC9-AS1,MRPS16+,-FALSEAluYSINE,Alu
chr1120695554GA0.00492.FALSE
chr2103333653TC0.00426MFSD9-FALSEAluYm1SINE,Alu
chr5178986987CT0.00651RUFY1+FALSE
chr2105883650TG0.00086TGFBRAP1-FALSE
chr128826223AG0.00990PHACTR4+TRUEAluJbSINE,Alu
chr2191224981GT0.00245INPP1+FALSE
chr1179072966CT0.00107ABL2-FALSEMIRcSINE,Alu
chr1220231982TC0.00328RNU5F-1,BPNT1+,-FALSEAluSzSINE,Alu
chr170904800GT0.00678CTH+FALSE
chr1229493734CT0.00163ERGIC2-FALSE
chr540832557GT0.00814RPL37-FALSE
chr76501829TA0.00081KDELR2-FALSE
chr5149823791GT0.00480.FALSE
chr2228421461GC0.00069AGFG1+FALSE
chr373116347TA0.00109PPP4R2+FALSE
chr439289308GC0.00509RFC1-FALSE
chr1145513114AG0.00026NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr1648386354AG0.00064LONP2,MIR5095+TRUEAluSz6SINE,Alu
chr136067677TC1.65353E-05PSMB2-TRUEAluSzSINE,Alu
chr11252441TC0.00602CPSF3L-TRUEAluJrSINE,Alu
chr11597423CT2.12697E-10CDK11B,SLC35E2B-FALSE
chr7129474438CT0.00034UBE2H-FALSE
chr16283348TC0.00247ICMT-TRUEAluSx3SINE,Alu
chr1288454641AT0.00753CEP290-FALSE
chr310192747AG0.00065VHL+TRUEAluSx1SINE,Alu
chr199673113TC0.00330.FALSEAluSx3SINE,Alu
chr345721990AG0.00022LIMD1,LIMD1-AS1+,-FALSEAluJbSINE,Alu
chr111347150CA0.00366UBIAD1+FALSE
chr119447819TC0.00337UBR4-FALSE
chr1225678219TC0.00080ENAH-TRUEAluSxSINE,Alu
chr13730400TC0.00800CEP104-TRUEAluSx3SINE,Alu
chr145244411CA0.00149RPS8+FALSE
chr116927039CT0.00040NBPF1-FALSE
chr417803578TC0.00712DCAF16-TRUEAluYSINE,Alu
chr4177252326AG0.00554SPCS3+TRUE
chr2128620438CA0.00230AMMECR1L-FALSE
chr3186502665CT0.00637EIF4A2+FALSE
chr167896040GA1.31286E-05SERBP1-FALSE
chr2143638994GA0.00075KYNU+FALSE
chr4165998152TC0.00288TMEM192-TRUEAluSxSINE,Alu
chr1930192475GA0.00575C19orf12-FALSEMER2SINE,Alu
chr5177576458AT0.00427.FALSE
chr3196557274CT0.00285PAK2+FALSE
chr116935130CT0.00019NBPF1-FALSE
chr133148211AG9.09328E-07SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr136024788CT2.88658E-15NCDN+FALSE
chr154563156AG3.59804E-06TCEANC2+FALSE
chr229170756AT0.00573WDR43+FALSE
chr187328396AT0.00148SEP15-FALSE
chr315114353TC8.61483E-05RBSN-TRUEAluYSINE,Alu
chr417803748TA0.00859DCAF16-FALSE
chr224494638TG0.00507ITSN2-FALSE(TATCCT)nSINE,Alu
chr1590819423AG3.09408E-05.FALSEAluSxSINE,Alu
chr121100753TC0.00624HP1BP3-TRUEAluJrSINE,Alu
chr119953124GA0.00137MINOS1,MINOS1-NBL1+FALSE
chr227887286GA0.00404SLC4A1AP+FALSE
chr237327702TC0.00989.FALSE
chr153289860AG0.00346ZYG11B+TRUEFRAMSINE,Alu
chr1145689537AG0.00028NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr438945834TC0.00287FAM114A1+FALSEAluScSINE,Alu
chr4190864378TG0.00247FRG1+FALSEGA-richSINE,Alu
chr43242100GA0.00916HTT+FALSE
chr1117530477GA0.00223PTGFRN+FALSE
chr1681422951TC0.00074.FALSE
chr1201860626AG0.00599SHISA4+FALSE
chr1115592820TC0.00107TSPAN2-FALSE
chrX152916235GA0.00015DUSP9+FALSE
chr119543456TC0.00760LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr119934879TC0.00454MINOS1,MINOS1-NBL1,RPS14P3+FALSE
chr310192608AG0.00030VHL+TRUEAluSx1SINE,Alu
chr121545089CT0.00834ECE1-FALSEAluSx1SINE,Alu
chr5170837887TA0.00401NPM1+FALSE
chr1322711AG0.00149.FALSE
chr442088291CA0.00000SLC30A9+FALSE
chr119543364TC0.00447LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr184971969GT0.00626GNG5-FALSE
chrX2825075TC0.00410ARSD-TRUEAluSx1SINE,Alu
chr224225006AG0.00078.FALSEAluSxSINE,Alu
chr110043840GT6.08980E-05NMNAT1+FALSE
chr116891333CT0.00011NBPF1-FALSE
chr356654600CG0.00490CCDC66,FAM208A+,-FALSE
chr541917720TG0.00727C5orf51+FALSE
chr1226172221TC0.00118SDE2-FALSEL1MEfSINE,Alu
chr1186646405CA9.05139E-05PRSS23+FALSEL2bSINE,Alu
chr570248478GA0.00229SMN1,SMN2+FALSEL1MC5aSINE,Alu
chr1186321189AG0.00010TPR-FALSE
chr125894472CG0.00063LDLRAP1+FALSEMIRbSINE,Alu
chr110519932TC0.00012.FALSEAluJrSINE,Alu
chr129446554CA0.00682EPB41,TMEM200B+,-FALSE
chr1145689717AG3.41980E-05NBPF20,NBPF10+TRUEAluJbSINE,Alu
chr1193474585TG0.00531TAF1D-FALSE
chr13731959CT0.00089CEP104-FALSE
chr1206580084CG0.00104SRGAP2+FALSE
chr129519736TC0.00610MECR-TRUEAluJbSINE,Alu
chr1911945632AG2.87422E-05ZNF440+TRUEAluSpSINE,Alu
chr42940364TC0.00718NOP14-AS1,NOP14+,-FALSEAluJoSINE,Alu
chr1227847344TC0.00205ZNF678+FALSE
chr11647814TC7.10450E-06CDK11B,CDK11A-FALSE
chr178414285TA0.00256FUBP1-FALSE
chr46710356TC0.00046MRFAP1L1-FALSE
chr456294628TC0.00234CLOCK-FALSE
chr310004768GA3.85967E-05EMC3-FALSETigger14aSINE,Alu
chr144415424AG0.00213IPO13+FALSE
chr755433880GC0.00778LANCL2+FALSE
chr116891333CT0.00281NBPF1-FALSE
chr126801731GT0.00325HMGN2+FALSE(T)nSINE,Alu
chr1150969257TC0.00400.FALSEAluSq2SINE,Alu
chr1206566948GA0.00228SRGAP2+FALSE
chr42940098TC0.00034NOP14-AS1,NOP14+,-FALSEAluSpSINE,Alu
chr192147985CA0.00370TGFBR3-FALSE
chr177759578AG0.00404AK5+FALSE
chr5140720886AG0.00980PCDHGA1,PCDHGA2+FALSE
chr3195411991CA0.00058SDHAP2+FALSE
chr1154128836AT0.00090TPM3-FALSE
chr642855954AG3.50340E-05RPL7L1+TRUEAluSzSINE,Alu
chr199672465TC0.00155.FALSEAluJrSINE,Alu
chr456236845AG6.76031E-06SRD5A3,SRD5A3-AS1+,-FALSEAluJbSINE,Alu
chr146032311AG0.00043AKR1A1+FALSE
chr1145281656AT0.00768NBPF20,NOTCH2NL+FALSE
chr537290416TC0.00162.FALSEAluSzSINE,Alu
chr1675479377TC0.00639TMEM170A-TRUEAluJbSINE,Alu
chr146828700AG0.00093NSUN4+FALSE
chr19162933CT0.00088.FALSE
chr1114940216TG0.00207TRIM33-FALSE(T)nSINE,Alu
chr1201438097GC2.75480E-05PHLDA3-FALSE
chr2178406767AT0.00416AGPS+FALSE
chr7116147752AG0.00031CAV2+FALSE(AAAAGAAA)nSINE,Alu
chr4160280309GT0.00770RAPGEF2+FALSE(T)nSINE,Alu
chr122148474TC0.00089LDLRAD2+FALSEMIRbSINE,Alu
chr456291751AC0.00291TMEM165+FALSE
chr1155734530TC0.00214GON4L-TRUE
chr269689663TC0.00091AAK1-TRUEAluSgSINE,Alu
chr3179116220TC0.00343GNB4-TRUEAluSz6SINE,Alu
chr5112312528TC0.00827DCP2+FALSE
chr16684049GA5.41898E-05PHF13+FALSE
chr1244572643CA0.00681ADSS-FALSE
chr286248309TC0.00808LOC90784-FALSE
chr3141667149TC0.00273TFDP2-TRUEAluSxSINE,Alu
chr2153506056TC0.00252FMNL2+FALSE
chr1160967857TC0.00806F11R-TRUEAluSpSINE,Alu
chr1689623607AG0.00915SPG7+FALSE
chr1118472401CT0.00396WDR3+FALSE
chr830536554TC0.00023GSR-TRUEAluSpSINE,Alu
chr1765334726TC7.47982E-07PSMD12-TRUEAluSqSINE,Alu
chr1789232CT0.00335LINC01128+FALSE
chr642856924AG2.08684E-05RPL7L1+TRUEAluSpSINE,Alu

Differential Expression Gene Analysis