RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	28661656	A	G	0.00319	MED18	+	TRUE	AluSg	SINE,Alu
chr12	69237013	A	G	0.00659	MDM2	+	TRUE
chr3	47386059	T	C	9.15846E-06	KLHL18	+	FALSE
chr1	118502684	G	A	0.00682	WDR3,SPAG17	+,-	FALSE
chr6	150046603	T	C	0.00730	NUP43	-	TRUE	AluSq2	SINE,Alu
chr1	155853061	A	G	0.00146	SYT11	+	TRUE	AluJb	SINE,Alu
chr4	165998654	T	C	0.00953	TMEM192	-	TRUE	AluSg	SINE,Alu
chr1	41088377	C	T	8.47840E-10	RIMS3	-	FALSE
chr1	93828523	T	A	0.00155		.	FALSE
chr1	154179193	A	T	0.00122	C1orf43	-	FALSE
chr11	768386	T	C	0.00208	PDDC1	-	TRUE	AluSc	SINE,Alu
chr1	31905886	C	A	0.00273	SERINC2	+	FALSE
chr4	190883001	C	G	0.00319	FRG1	+	FALSE
chr1	204521616	A	G	4.81420E-06	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	145512078	A	G	0.00907	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr17	47007752	A	T	0.00029	SNF8	-	FALSE
chr1	93307479	C	A	0.00085	FAM69A,RPL5	+,-	FALSE
chr1	28662105	A	G	0.00846	MED18	+	TRUE	AluSq2	SINE,Alu
chr14	75202698	A	G	6.15110E-05	FCF1	+	TRUE	AluSc	SINE,Alu
chr12	12967264	C	G	0.00781	DDX47	+	FALSE
chr8	143744407	T	C	0.00697	JRK	-	TRUE	AluJr	SINE,Alu
chr1	10520588	T	C	0.00341		.	FALSE	AluSc8	SINE,Alu
chr1	31837516	G	C	5.10721E-05	ZCCHC17	+	FALSE
chr1	46165408	T	C	0.00106	IPP	-	TRUE	FRAM	SINE,Alu
chr1	40537943	A	C	0.00115	CAP1	+	FALSE	(A)n	SINE,Alu
chr3	9848198	G	T	0.00295	ARPC4,ARPC4-TTLL3	+	FALSE	(T)n	SINE,Alu
chr2	86252038	T	C	0.00453	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr1	25889571	G	A	0.00344	LDLRAP1	+	FALSE
chr1	111991845	C	A	0.00803	WDR77,ATP5F1	+,-	FALSE
chr1	154128836	A	T	0.00090	TPM3	-	FALSE
chr1	6282401	T	C	0.00806	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	8413129	G	A	0.00040	RERE	-	FALSE
chr7	152345392	T	C	0.00643	XRCC2	-	TRUE	AluSx1	SINE,Alu
chr12	120898998	A	G	0.00081	GATC	+	TRUE	AluJr	SINE,Alu
chr1	225707043	T	C	2.18813E-07	ENAH	-	FALSE
chr7	6501830	G	A	0.00110	KDELR2	-	FALSE
chr4	17802956	T	C	0.00351	DCAF16	-	TRUE	AluSz	SINE,Alu
chr6	158613393	A	T	0.00108	GTF2H5	+	FALSE
chr1	24861704	G	A	0.00345	RCAN3	+	FALSE
chr1	145116141	G	A	0.00266	NBPF20,SEC22B	+	FALSE
chr11	68523504	T	C	0.00029	CPT1A	-	TRUE	AluSq	SINE,Alu
chr11	75526481	C	A	0.00995	UVRAG	+	FALSE
chr4	17804872	T	C	0.00096	DCAF16	-	TRUE	AluSx	SINE,Alu
chr1	109419841	C	T	0.00057	GPSM2	+	FALSE
chr1	108678732	T	C	0.00396	SLC25A24	-	FALSE
chr1	28825466	A	G	0.00701	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	26611197	C	T	0.00814	UBXN11	-	FALSE
chr1	20826786	T	A	0.00030	MUL1	-	FALSE
chr1	182568729	C	G	0.00012	RGS16	-	FALSE
chr3	13670776	T	C	0.00336	FBLN2	+	FALSE
chr12	92537702	T	A	0.00368	BTG1	-	FALSE
chr12	53435277	G	T	2.75857E-05	EIF4B	+	FALSE
chr3	10192709	C	T	0.00082	VHL	+	FALSE	AluSx1	SINE,Alu
chr1	32799437	C	T	0.00318	MARCKSL1	-	FALSE
chr1	10518052	T	C	7.90759E-05		.	FALSE	AluJr	SINE,Alu
chr1	19586455	A	G	0.00296	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	1595540	T	C	0.00830	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	17393260	T	C	0.00094	PADI2	-	FALSE
chr1	144912233	C	T	0.00066	NBPF20,PDE4DIP	+,-	FALSE
chr1	1597020	C	G	0.00021	CDK11B,SLC35E2B	-	FALSE
chr1	78414329	G	A	0.00785	FUBP1	-	FALSE	A-rich	SINE,Alu
chr3	14986110	T	C	0.00051	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	206581246	T	C	0.00210	SRGAP2	+	FALSE
chr1	155695968	A	G	0.00017	DAP3	+	TRUE	AluSp	SINE,Alu
chr9	131872862	C	G	0.00131	CRAT	-	FALSE
chr1	120695749	A	G	0.00130		.	FALSE
chr5	37290336	T	C	0.00036		.	FALSE	AluSz	SINE,Alu
chr1	6659505	G	A	0.00196	KLHL21	-	FALSE
chr1	26755209	A	G	0.00745	LIN28A	+	FALSE	AluSx1	SINE,Alu
chr1	10368093	C	A	0.00131	KIF1B	+	FALSE
chr2	86250101	T	C	0.00038	LOC90784	-	TRUE	AluSx	SINE,Alu
chr6	13790931	T	C	0.00948	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr1	212277584	G	C	0.00997	DTL	+	FALSE
chr1	92862904	A	G	0.00279		.	FALSE	AluJr	SINE,Alu
chr7	129472356	C	T	0.00279	UBE2H	-	FALSE
chr3	185826740	T	G	0.00041	ETV5	-	FALSE
chr11	769459	T	C	0.00082	PDDC1	-	TRUE	AluSq2	SINE,Alu
chr1	16889633	T	C	0.00217	NBPF1	-	TRUE
chr12	124105948	C	T	0.00778	EIF2B1	-	FALSE
chr7	115898258	A	T	0.00314	TES	+	FALSE	(T)n	SINE,Alu
chr2	112252464	G	A	2.95640E-06	MIR4435-2HG	-	FALSE
chr1	16927391	T	C	0.00110	NBPF1	-	FALSE
chr1	200827638	A	G	0.00665	CAMSAP2	+	FALSE
chr1	65692500	T	C	0.00281	AK4	+	FALSE	(T)n	SINE,Alu
chr1	33148706	A	G	0.00087	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	36752811	C	T	2.19602E-12	THRAP3	+	FALSE
chr1	156565056	C	T	0.00498	GPATCH4	-	FALSE
chr11	45827050	G	C	0.00045	SLC35C1	+	FALSE
chr1	16269737	C	T	0.00816	ZBTB17	-	FALSE
chr1	326500	A	G	0.00189		.	FALSE
chr1	52306075	T	C	0.00135	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr1	1255402	C	G	0.00333	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr7	128607384	G	A	0.00925	TNPO3	-	FALSE
chr3	15113733	T	C	0.00228	RBSN	-	TRUE	AluSz6	SINE,Alu
chr2	37327702	T	C	8.81739E-07		.	FALSE
chr6	24780892	A	C	0.00246	GMNN	+	FALSE
chr1	10520099	T	C	0.00152		.	FALSE	AluSx	SINE,Alu
chr14	75202532	A	G	1.20675E-07	FCF1	+	TRUE	AluSc	SINE,Alu
chr3	49142142	G	T	6.70614E-05	QARS	-	FALSE
chr1	220231959	T	C	0.00464	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	24989266	A	T	0.00392	SRRM1	+	FALSE
chr7	65618870	A	G	0.00097	CRCP	+	TRUE	AluSx3	SINE,Alu
chr16	10625414	T	C	0.00015	EMP2	-	TRUE	AluSx	SINE,Alu
chr1	144931392	G	A	0.00241	NBPF20,PDE4DIP	+,-	FALSE
chr1	120163520	T	C	0.00017	ZNF697	-	FALSE
chr3	113528892	A	T	8.78648E-05	ATP6V1A	+	FALSE	AluSp	SINE,Alu
chr5	61683960	A	G	0.00491		.	FALSE
chr1	20809386	T	G	0.00561	CAMK2N1	-	FALSE
chr9	131812176	C	T	0.00220	MIGA2	+	FALSE
chr1	10520684	T	C	0.00125	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	120612194	C	G	0.00561	NOTCH2	-	FALSE	(CCG)n	SINE,Alu
chr1	28836900	A	G	0.00018	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr1	1650797	A	G	0.00276	CDK11B,CDK11A	-	FALSE
chr17	31258352	G	A	0.00417	TMEM98	+	FALSE
chr16	10623666	T	C	1.68352E-07	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	16933625	A	G	0.00536	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr2	201774185	T	C	0.00921		.	FALSE	AluSz	SINE,Alu
chr3	10192720	A	G	0.00110	VHL	+	TRUE	AluSx1	SINE,Alu
chrX	77084001	T	C	1.05736E-07	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	117530273	A	G	0.00601	PTGFRN	+	FALSE
chr1	33149414	A	G	0.00722	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr4	95586224	A	G	0.00053	PDLIM5	+	FALSE
chr2	28002599	T	A	0.00566	MRPL33	+	FALSE
chr1	16203171	C	T	3.13656E-06	SPEN	+	FALSE
chr1	148558170	T	C	0.00235		.	FALSE	AluJb	SINE,Alu
chr1	16768088	G	A	0.00063	NECAP2	+	FALSE
chr16	69151495	T	A	0.00304	HAS3	+	FALSE	(T)n	SINE,Alu
chrX	102613351	A	G	0.00969	TCEAL9	+	FALSE	L1ME4a	SINE,Alu
chr11	73387540	G	A	0.00438	RAB6A	-	FALSE
chr1	33071043	A	G	4.49838E-05	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr1	160965287	T	C	0.00766	F11R	-	TRUE	AluSc	SINE,Alu
chr1	11982544	T	C	4.37710E-05	KIAA2013	-	FALSE
chr1	15993699	C	A	0.00420		.	FALSE	AluSx4	SINE,Alu
chr1	6948204	T	C	4.22429E-07	CAMTA1	+	FALSE	L2a	SINE,Alu
chr2	61764895	C	A	0.00862	XPO1	-	FALSE	(AC)n	SINE,Alu
chr2	114352238	G	A	8.42668E-06	WASH2P	+	FALSE
chr1	1650657	C	G	0.00379	CDK11B,CDK11A	-	FALSE
chr5	52386902	A	G	0.00249	ITGA2	+	FALSE
chr1	36642328	C	T	0.00971	MAP7D1	+	FALSE	GA-rich	SINE,Alu
chr1	144053663	A	T	0.00155		.	FALSE
chr2	1636053	A	G	0.00189	PXDN	-	FALSE
chr3	14986080	T	C	4.44089E-16	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	1650832	A	G	0.00241	CDK11B,CDK11A	-	FALSE
chr2	201735790	G	C	0.00671	PPIL3	-	FALSE
chr6	42856170	A	G	0.00141	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr5	149363214	A	G	0.00040	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr1	149913733	T	C	0.00143	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr4	7765042	C	T	0.00903	AFAP1,AFAP1-AS1	+,-	FALSE
chr2	113334241	A	G	0.00388	POLR1B	+	TRUE
chr2	203742126	T	C	0.00451		.	FALSE	AluJb	SINE,Alu
chr1	25554719	G	A	0.00403	SYF2	-	FALSE
chr2	65496187	G	A	0.00266	ACTR2	+	FALSE
chr7	91742142	C	A	0.00478	CYP51A1	-	FALSE	AluSx3	SINE,Alu
chr5	64964314	T	C	0.00208	SGTB	-	TRUE	AluSc	SINE,Alu
chr1	45671434	G	C	0.00819	ZSWIM5	-	FALSE
chr11	19245854	T	C	0.00078	E2F8	-	FALSE
chr1	10042988	A	G	3.32241E-06	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	16892274	A	T	0.00371	NBPF1	-	FALSE
chr2	85773494	T	C	0.00099	GGCX	-	TRUE	AluY	SINE,Alu
chr3	44790879	T	C	0.00453	KIAA1143	-	TRUE	AluY	SINE,Alu
chr2	88327464	C	T	0.00046	KRCC1	-	FALSE
chr1	101442569	C	A	0.00567	SLC30A7	+	FALSE
chr1	182360928	A	C	0.00635	GLUL	-	FALSE
chr1	32637068	G	T	0.00146	KPNA6	+	FALSE
chr1	23636028	T	A	0.00029	HNRNPR	-	FALSE
chr3	5258280	A	G	4.07938E-08	EDEM1	+	FALSE
chr1	89648082	G	A	0.00074	GBP4	-	FALSE	LTR2B	SINE,Alu
chr3	124948047	C	G	0.00285	ZNF148	-	FALSE
chr10	75008815	T	C	0.00309	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr2	242384528	G	T	2.14488E-07	FARP2	+	FALSE	AluJr	SINE,Alu
chr1	47184569	G	C	0.00061	EFCAB14	-	FALSE
chr13	76378459	T	C	0.00239	LMO7	+	FALSE
chr1	150446028	G	T	0.00624	RPRD2	+	FALSE
chrX	77083955	T	C	0.00065	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	53291382	A	G	0.00132	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	10519910	T	C	7.27344E-07		.	FALSE	AluJr	SINE,Alu
chr17	78294253	A	G	0.00031	RNF213	+	TRUE	AluSp	SINE,Alu
chr5	179020622	T	C	2.11448E-05	RUFY1	+	FALSE
chr16	10625049	T	C	1.15092E-05	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	19586501	A	G	0.00119	MRTO4	+	TRUE	AluSz	SINE,Alu
chr3	47628810	T	A	0.00934	SMARCC1	-	FALSE
chr1	112258252	A	G	0.00224	RAP1A	+	FALSE
chr12	56215097	A	T	0.00051	DNAJC14	-	FALSE
chr2	203922075	A	G	0.00561	NBEAL1	+	FALSE
chr8	145139727	C	T	0.00458	GPAA1	+	FALSE
chr2	188330198	C	A	0.00091	TFPI	-	FALSE	AluJb	SINE,Alu
chr2	86249930	T	C	6.06022E-05	LOC90784	-	TRUE	AluJr	SINE,Alu
chr3	119545349	T	C	0.00805	GSK3B	-	FALSE
chr1	89447715	T	G	0.00137	KYAT3,RBMXL1	-	FALSE
chr5	180682610	T	C	0.00014	CTC-338M12.4	+	FALSE
chr1	10520702	T	C	0.00438	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	36068325	T	C	0.00065	PSMB2	-	TRUE	AluSc	SINE,Alu
chr5	149823795	A	T	0.00261	RPS14	-	FALSE
chr17	60522252	G	A	0.00187	METTL2A	+	FALSE
chr3	183529603	G	A	0.00219	YEATS2	+	FALSE
chr2	37328034	T	C	0.00035		.	FALSE
chr1	36067760	T	C	0.00362	PSMB2	-	TRUE	AluSz	SINE,Alu
chr6	29911284	T	C	0.00019		.	FALSE
chr13	20247038	A	G	0.00391	MPHOSPH8	+	TRUE	AluJb	SINE,Alu
chr2	85772404	C	A	0.00015	GGCX	-	FALSE
chr12	96259951	G	A	0.00328	SNRPF	+	FALSE
chr2	128952699	A	G	0.00497	UGGT1	+	TRUE	AluSp	SINE,Alu
chr1	19542310	T	C	0.00532	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	25894468	C	G	0.00357	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	35649803	A	C	0.00659	SFPQ	-	FALSE
chr1	25717365	C	G	0.00229	RHCE	-	FALSE
chr1	148003749	T	C	0.00050	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr1	144852203	T	G	0.00518	NBPF20,PDE4DIP	+,-	FALSE
chr1	41326886	C	G	0.00085	CITED4	-	FALSE
chr1	788840	T	C	0.00415	LINC01128	+	FALSE
chr1	168220529	A	G	0.00161		.	FALSE	AluSz6	SINE,Alu
chr12	133298349	A	G	2.42844E-07	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	12071680	A	G	5.54475E-07	MFN2	+	FALSE
chr5	128430757	T	C	0.00338	ISOC1	+	FALSE
chr9	89626918	A	G	0.00048	LOC440173	-	FALSE
chr1	116235179	G	T	0.00187	VANGL1	+	FALSE
chr7	128143289	A	G	0.00082		.	FALSE	AluSc8	SINE,Alu
chr3	185646406	A	T	0.00023	TRA2B	-	FALSE
chr1	16576836	A	G	0.00885	FBXO42	-	FALSE
chr1	148252049	A	C	0.00042	NBPF8,NBPF14,NBPF9	-	FALSE
chr3	48787011	T	C	0.00040	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr19	54627915	C	T	0.00015	PRPF31	+	FALSE
chr1	206516261	C	T	0.00228	SRGAP2	+	FALSE
chr8	12880246	A	G	0.00012	KIAA1456	+	TRUE	AluJo	SINE,Alu
chr1	54871874	C	T	1.50809E-06	SSBP3	-	FALSE
chr6	11577085	C	T	1.34362E-05	TMEM170B	+	FALSE
chr3	124688639	C	A	0.00165	HEG1	-	FALSE
chr1	174983207	T	G	0.00681	MRPS14	-	FALSE
chr2	91805816	G	A	2.75786E-10		.	FALSE
chr6	153314040	G	A	0.00041	MTRF1L	-	FALSE
chr2	121979980	G	A	0.00525	TFCP2L1	-	FALSE	L1MB8	SINE,Alu
chr1	10519936	T	C	0.00607		.	FALSE	AluJr	SINE,Alu
chr1	154554950	G	T	0.00599	ADAR	-	FALSE
chr1	46764013	G	A	0.00224	LRRC41	-	FALSE
chr3	181430141	G	C	0.00086	SOX2-OT,SOX2	+	FALSE
chr5	125961649	A	G	3.29658E-05	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	225684742	T	C	0.00518	ENAH	-	FALSE
chr2	75120159	C	T	0.00180	HK2	+	FALSE
chr3	150261569	T	G	0.00173	SERP1	-	FALSE
chr17	73773311	T	G	0.00474	H3F3B	-	FALSE
chr1	9330479	C	T	0.00027	H6PD	+	FALSE
chr1	27182750	G	C	0.00141		.	FALSE
chr3	137787047	C	T	0.00735	DZIP1L	-	FALSE
chr1	214524576	T	C	0.00337	PTPN14	-	TRUE	AluSg	SINE,Alu
chr7	44839297	A	T	0.00777	PPIA	+	FALSE
chr1	1337737	G	C	2.51903E-05	MRPL20	-	FALSE
chr1	38280010	C	T	0.00393	MTF1	-	FALSE
chr4	154257511	C	A	0.00093	TRIM2	+	FALSE	(A)n	SINE,Alu
chr2	61764916	A	C	0.00189	XPO1	-	FALSE	(AC)n	SINE,Alu
chr1	10519200	T	C	0.00059		.	FALSE	AluSx3	SINE,Alu
chr1	50906945	C	T	0.00178	FAF1	-	FALSE
chr2	61386572	C	G	0.00821	C2orf74	+	FALSE	AluSz	SINE,Alu
chr1	10520174	T	C	0.00158		.	FALSE	AluSx	SINE,Alu
chr1	31905886	C	A	0.00226	SERINC2	+	FALSE

RBP	U2AF2
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR622MCX
Platform	HiSeq
Pubmed ID	32252787

U2AF2 - Target Gene Network