RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr11	20101744	C	A	0.00540	NAV2	+	FALSE
chr1	94335332	G	T	0.00973	DNTTIP2	-	FALSE
chr2	128601490	T	C	0.00013		.	FALSE	AluJr	SINE,Alu
chr1	52817504	T	C	0.00934	CC2D1B	-	TRUE	AluSg4	SINE,Alu
chr1	10240859	G	T	0.00312	UBE4B	+	FALSE
chr1	36067838	T	C	2.61513E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	145281633	C	A	0.00510	NBPF20,NOTCH2NL	+	FALSE
chr5	139931632	C	G	0.00052	SRA1	-	FALSE
chr1	45975345	A	G	9.37661E-05	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	1252441	T	C	0.00602	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr1	109795026	T	C	0.00355	CELSR2	+	FALSE
chr1	19440460	C	T	0.00073	UBR4	-	FALSE
chr2	232319613	C	T	0.00022	NCL	-	FALSE
chr22	39415796	A	T	0.00084		.	FALSE	MER49	SINE,Alu
chr2	143638998	G	A	0.00496	KYNU	+	FALSE
chr1	36068369	T	C	5.31121E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	11782984	A	G	0.00107		.	FALSE	AluSx	SINE,Alu
chr4	56295166	A	G	0.00988	CLOCK	-	FALSE
chr19	19792288	A	G	0.00379	ZNF101	+	TRUE	AluJb	SINE,Alu
chr12	1086062	G	T	0.00847	RAD52	-	FALSE	L2	SINE,Alu
chr1	6584872	T	C	9.65243E-06	NOL9	-	TRUE	AluYk2	SINE,Alu
chr16	9200168	A	T	0.00908	C16orf72	+	FALSE	AluSx1	SINE,Alu
chr1	42008521	G	T	0.00882	HIVEP3	-	FALSE
chr3	156259288	T	C	0.00072	SSR3	-	TRUE	AluSq2	SINE,Alu
chr1	100654789	T	C	0.00014	DBT	-	TRUE	AluSz	SINE,Alu
chr12	46577921	G	T	0.00306	SLC38A1	-	FALSE
chr3	62189314	C	T	0.00018	PTPRG	+	FALSE
chr4	49591495	G	C	0.00893		.	FALSE
chr6	26095462	A	G	0.00113	HFE	+	TRUE	AluY	SINE,Alu
chr1	24862649	A	G	0.00299	RCAN3	+	FALSE
chr10	45499895	G	A	0.00255	ZNF22	+	FALSE
chr19	16663345	T	C	0.00304	SLC35E1	-	TRUE	AluSg	SINE,Alu
chr3	14986098	T	C	0.00000	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	31344952	C	T	0.00842	SDC3	-	FALSE
chr7	38763068	T	C	0.00361		.	FALSE	AluSx3	SINE,Alu
chr2	204301754	C	G	0.00012	RAPH1	-	FALSE
chr1	89271574	T	C	3.83690E-05	PKN2	+	FALSE
chr19	53914417	A	G	0.00013	ZNF765	+	TRUE	AluSx	SINE,Alu
chr10	81114959	C	T	0.00048	PPIF	+	FALSE	MSTA	SINE,Alu
chr1	46830447	A	C	0.00168	NSUN4	+	FALSE	LTR108a_Mam	SINE,Alu
chr2	33623905	G	T	0.00262	LTBP1	+	FALSE
chr20	25427756	A	G	0.00396	GINS1	+	TRUE	AluSz	SINE,Alu
chr17	28575454	A	C	0.00470	BLMH	-	FALSE
chr1	159946779	G	A	0.00019	LINC01133	+	FALSE	(GAAA)n	SINE,Alu
chr1	16912014	A	C	0.00199	NBPF1	-	FALSE
chr2	55459824	C	T	0.00763	RPS27A	+	FALSE
chr10	54069186	C	T	0.00089	PRKG1-AS1	-	FALSE
chr4	103809324	A	C	0.00658	CISD2,SLC9B1	+,-	FALSE
chr6	34231288	A	G	0.00143		.	FALSE
chr1	145689271	A	G	0.00250	NBPF20,NBPF10	+	FALSE
chr1	16932429	C	G	0.00221	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	28662105	A	G	9.98367E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr19	583145	G	A	0.00227	BSG	+	FALSE
chr1	144930940	T	C	6.15272E-05	NBPF20,PDE4DIP	+,-	FALSE
chr1	27205871	G	T	0.00931		.	FALSE
chr4	39551166	T	C	0.00309	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	94351062	T	A	0.00676	GCLM	-	FALSE
chr1	19586458	A	G	1.61978E-09	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	45244421	G	A	0.00925		.	FALSE
chr1	16893691	C	A	0.00764	NBPF1	-	FALSE
chr2	99812978	A	G	0.00475	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	144053663	A	T	0.00155		.	FALSE
chr16	89623607	A	G	0.00915	SPG7	+	FALSE
chr14	74431191	A	G	0.00670	ENTPD5	-	FALSE
chr1	212254067	G	A	0.00714	DTL	+	FALSE
chr1	54691906	C	G	0.00465	SSBP3	-	FALSE
chr1	93298516	A	G	0.00493	FAM69A,RPL5	+,-	FALSE
chr1	16952377	C	T	0.00056	CROCCP2	-	FALSE
chr1	11084103	T	A	0.00146	TARDBP	+	FALSE
chr1	166820104	G	A	0.00477	POGK	+	FALSE	MER1B	SINE,Alu
chr17	7485341	C	A	0.00701	CD68,LOC100996842	+,-	FALSE
chr17	48771486	G	A	0.00081	ANKRD40	-	FALSE	AluSz	SINE,Alu
chr1	53291344	A	G	0.00088	ZYG11B	+	FALSE	(A)n	SINE,Alu
chr12	133298417	A	G	6.66134E-16	PGAM5	+	TRUE	AluSp	SINE,Alu
chr2	187544218	T	G	0.00796	ITGAV	+	FALSE
chr4	1205667	A	C	0.00611	CTBP1-AS,CTBP1	+,-	FALSE	(A)n	SINE,Alu
chr1	19934758	C	G	1.75422E-05	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr2	37328034	T	C	6.77479E-07		.	FALSE
chr1	38002251	G	C	0.00624	SNIP1	-	FALSE
chr6	52226984	G	A	0.00127	PAQR8	+	FALSE	(GCTCGG)n	SINE,Alu
chr1	148251814	T	A	0.00353	NBPF8,NBPF14,NBPF9	-	FALSE
chr1	19585772	G	A	0.00576	MRTO4	+	FALSE	AluSc8	SINE,Alu
chr1	226352498	T	G	0.00636	ACBD3	-	FALSE
chr1	20978451	T	C	0.00193	PINK1-AS,DDOST	-	TRUE	AluY	SINE,Alu
chr1	148003749	T	C	0.00517	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr1	16912014	A	C	0.00029	NBPF1	-	FALSE
chr4	128757345	A	G	0.00040		.	FALSE	AluY	SINE,Alu
chr4	17803681	T	C	3.85233E-06	DCAF16	-	TRUE	AluY	SINE,Alu
chr1	16918502	A	G	0.00437	NBPF1	-	FALSE
chr2	30748507	C	T	0.00103	LCLAT1	+	FALSE
chr1	154323598	T	A	0.00198	ATP8B2	+	FALSE	(TA)n	SINE,Alu
chr3	105258861	A	G	0.00030	ALCAM	+	FALSE
chr1	144931727	G	A	4.04936E-05	NBPF20,PDE4DIP	+,-	FALSE
chr7	2650926	G	A	0.00306	IQCE	+	FALSE
chr17	73886212	T	C	0.00724	TRIM65	-	TRUE	FRAM	SINE,Alu
chr1	16889864	C	A	0.00020	NBPF1	-	FALSE
chr1	16912085	T	C	0.00206	NBPF1	-	FALSE
chr2	231683849	A	G	0.00786	CAB39	+	FALSE
chr1	1717439	T	A	0.00663	GNB1	-	FALSE
chr1	16890320	T	C	0.00045	NBPF1	-	FALSE
chr1	9331227	A	G	0.00181	H6PD	+	TRUE	AluSx	SINE,Alu
chr3	125248854	A	C	0.00014	OSBPL11	-	FALSE
chr1	10520202	T	C	0.00529		.	FALSE	AluSx	SINE,Alu
chr1	26755291	A	G	0.00044	LIN28A	+	TRUE	AluSx1	SINE,Alu
chr6	122765962	T	A	0.00362	SERINC1	-	FALSE
chr15	41590839	A	G	0.00344	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr2	206983491	T	C	0.00505		.	FALSE	AluSx	SINE,Alu
chr1	101444065	T	C	0.00927	SLC30A7	+	FALSE	MIR3	SINE,Alu
chr4	126849	A	G	0.00018	ZNF718	+	TRUE	AluSc	SINE,Alu
chr2	74442407	A	G	0.00122	MTHFD2	+	FALSE
chr10	94414146	A	G	0.00911	KIF11	+	FALSE
chr7	100064719	A	G	0.00276	TSC22D4	-	FALSE
chr7	128143512	A	G	0.00984		.	FALSE	AluJr4	SINE,Alu
chr1	45976257	C	A	0.00015	MMACHC	+	FALSE
chr3	184429718	A	G	0.00914	MAGEF1	-	FALSE
chr1	1017747	A	G	0.00142	C1orf159	-	FALSE
chr11	118471800	T	A	0.00875	ARCN1	+	FALSE	AluSx3	SINE,Alu
chr5	74072638	G	A	0.00431	NSA2	+	FALSE
chr1	179044181	A	G	1.64117E-06	FAM20B	+	TRUE	AluSx	SINE,Alu
chr3	185009713	G	T	0.00106	MAP3K13	+	FALSE
chr2	160084473	A	C	0.00101	TANC1	+	FALSE
chr1	19954014	G	T	0.00055	MINOS1,MINOS1-NBL1	+	FALSE	L2c	SINE,Alu
chr1	120166681	G	A	0.00879	ZNF697	-	FALSE
chr1	153521525	G	A	0.00013	LOC101928034,S100A3	+,-	FALSE
chr1	28930023	G	A	5.17411E-07	TAF12	-	FALSE
chr2	206988452	A	T	0.00669	NDUFS1	-	FALSE
chr1	85785549	T	C	0.00621	DDAH1	-	FALSE
chr19	42376711	A	G	0.00223		.	FALSE	AluSp	SINE,Alu
chr17	74561213	A	G	0.00241	SNHG16	+	FALSE
chr1	6279957	A	G	0.00814	RNF207	+	TRUE	AluSp	SINE,Alu
chr1	53359745	A	G	0.00661	ZYG11A	+	TRUE	AluSx4	SINE,Alu
chr2	24225542	A	G	0.00348		.	FALSE	AluSq2	SINE,Alu
chr1	145281408	C	T	0.00087	NBPF20,NOTCH2NL	+	FALSE
chr3	10193743	T	C	0.00456	VHL	+	FALSE	AluJr	SINE,Alu
chr6	13789470	T	C	0.00166	MCUR1	-	TRUE	AluSg	SINE,Alu
chr4	2940371	T	C	0.00150	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	20945055	C	T	0.00269	CDA	+	FALSE
chr12	69237558	A	G	0.00034	MDM2	+	TRUE
chr1	6283306	T	C	0.00558	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	160990876	C	A	1.09997E-06	F11R	-	FALSE
chr21	34731077	A	G	0.00926	IFNAR1	+	TRUE	AluJr	SINE,Alu
chr5	55235866	T	A	0.00073	IL6ST	-	FALSE
chr14	50361164	C	T	0.00103	ARF6	+	FALSE	(T)n	SINE,Alu
chr12	9464178	G	A	0.00081	LOC642846	+	FALSE
chr9	136209399	A	T	0.00011	MED22	-	FALSE
chr1	206566195	C	T	7.54522E-05	SRGAP2	+	FALSE
chr8	146035211	T	C	0.00116	ZNF517	+	FALSE	AluSx1	SINE,Alu
chr5	118174745	T	C	0.00084	DTWD2	-	TRUE	AluY	SINE,Alu
chr4	2931174	T	C	0.00211	ADD1	+	FALSE
chr14	53242417	T	C	0.00423	GNPNAT1	-	TRUE	AluJo	SINE,Alu
chr5	139931622	T	A	0.00881	SRA1	-	FALSE
chr6	31236900	G	A	0.00167		.	FALSE
chr7	128142833	A	G	6.82570E-05	METTL2B	+	TRUE	AluSx1	SINE,Alu
chr1	9163383	T	C	0.00383		.	FALSE	AluSp	SINE,Alu
chr1	45976265	A	G	0.00657	MMACHC	+	FALSE
chr6	109784327	T	C	2.38076E-05	MICAL1,ZBTB24	-	TRUE	AluSg	SINE,Alu
chr1	10520178	T	C	2.78615E-06		.	FALSE	AluSx	SINE,Alu
chr1	47905555	A	C	0.00661	FOXD2	+	FALSE
chr1	19934839	A	G	0.00052	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr16	69338754	T	C	0.00210	SNTB2	+	FALSE	AluJr	SINE,Alu
chr5	34906750	T	C	0.00527	RAD1	-	TRUE	AluJo	SINE,Alu
chr2	91805816	G	A	2.75786E-10		.	FALSE
chr1	162497663	G	A	0.00365	UHMK1	+	FALSE
chr3	33185036	G	A	0.00573	CRTAP	+	FALSE	L2a	SINE,Alu
chr1	114938105	T	A	0.00430	TRIM33	-	FALSE
chr7	6501833	A	T	0.00937	KDELR2	-	FALSE
chr1	45975358	A	G	0.00339	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	16889642	T	C	6.70250E-05	NBPF1	-	TRUE
chr20	54943385	C	A	0.00844	FAM210B	+	FALSE
chr4	39550549	T	C	0.00014	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr1	100491475	A	G	0.00508	SLC35A3	+	FALSE
chr1	95362949	A	T	0.00114	CNN3	-	FALSE	(A)n	SINE,Alu
chr16	11931208	A	T	0.00316	RSL1D1	-	FALSE
chr1	11979814	G	A	0.00697	KIAA2013	-	FALSE
chr15	33064461	C	T	0.00653	FMN1	-	FALSE
chr19	58361328	G	C	0.00972	ZNF587	+	FALSE
chr1	93803490	T	C	0.00572	CCDC18-AS1	-	FALSE	AluJr	SINE,Alu
chr1	149576483	G	A	0.00323	LINC00623,LINC00869,LOC103091866	+	FALSE
chr1	47184569	G	C	0.00509	EFCAB14	-	FALSE
chr10	61548856	T	C	0.00067	CCDC6	-	FALSE
chr1	145511797	T	G	0.00894	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	(T)n	SINE,Alu
chr2	204162036	A	G	0.00369	CYP20A1	+	TRUE	AluSx	SINE,Alu
chr7	29960315	C	T	0.00015	SCRN1	-	FALSE
chr2	75882576	T	C	0.00328	MRPL19	+	FALSE
chr2	38971640	A	C	0.00050	SRSF7	-	FALSE
chr2	37331745	T	C	0.00097		.	FALSE	AluJb	SINE,Alu
chr1	43917637	G	A	0.00164	SZT2,HYI	+,-	FALSE
chr3	5258280	A	G	4.07938E-08	EDEM1	+	FALSE
chr1	150703860	T	C	0.00222	CTSS	-	TRUE	AluSx	SINE,Alu
chr7	6442891	G	A	0.00134	RAC1	+	FALSE
chr15	91044387	T	G	0.00077	IQGAP1	+	FALSE
chr2	96934504	T	C	0.00021	CIAO1	+	FALSE
chr1	6582221	T	C	6.47537E-05	NOL9	-	TRUE	AluSq4	SINE,Alu
chr1	201846617	A	C	0.00380	IPO9	+	FALSE	(CA)n	SINE,Alu
chr1	87379494	A	T	0.00364	SEP15	-	FALSE
chr2	69689806	T	C	0.00175	AAK1	-	TRUE	AluSg	SINE,Alu
chr3	15113655	T	C	6.08503E-07	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	16913612	G	A	0.00581	NBPF1	-	FALSE
chr1	109465170	T	C	0.00565	GPSM2	+	FALSE
chr1	16889575	T	C	0.00969	NBPF1	-	TRUE
chr1	1252221	T	C	0.00186	CPSF3L	-	TRUE	AluSx	SINE,Alu
chr1	204524400	A	G	0.00029	MDM4	+	TRUE	AluY	SINE,Alu
chr1	27205359	T	C	3.58613E-05		.	FALSE	AluSc	SINE,Alu
chr6	132617374	C	G	0.00062	MOXD1	-	FALSE
chr5	43298557	C	T	0.00643	HMGCS1	-	FALSE
chr4	73922978	T	C	0.00079	COX18	-	TRUE	AluSz	SINE,Alu
chr2	209113192	G	A	0.00610	IDH1	-	FALSE
chr1	148251079	T	C	0.00880	NBPF8,NBPF14,NBPF9	-	FALSE	L1MC4	SINE,Alu
chr10	22824831	C	T	0.00702	PIP4K2A	-	FALSE
chr1	40219280	T	C	0.00169	PPIE	+	FALSE
chr2	190636411	C	G	0.00870	ORMDL1	-	FALSE
chr1	6582149	T	C	0.00173	NOL9	-	TRUE	AluSq4	SINE,Alu
chr1	43394666	G	A	0.00224	SLC2A1	-	FALSE
chr2	85548639	A	G	0.00687	TGOLN2	-	FALSE
chr3	178741082	A	C	5.87013E-06	ZMAT3	-	FALSE
chr1	27202812	T	C	0.00388		.	FALSE	AluSq2	SINE,Alu
chr12	131356731	T	C	2.96756E-07	RAN	+	FALSE	(GGCCGG)n	SINE,Alu

RBP	HDGF
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR634KHL
Platform	HiSeq
Pubmed ID	32252787

HDGF - Target Gene Network