RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	53289852	A	G	0.00020	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	10521172	T	C	1.01590E-06	DFFA	-	TRUE	AluY	SINE,Alu
chr6	33384325	G	T	0.00456		.	FALSE
chr1	43167907	T	C	0.00072	YBX1	+	FALSE
chr7	98015394	G	C	0.00118	BAIAP2L1	-	FALSE
chr1	6583383	T	C	0.00305	NOL9	-	TRUE	AluSq	SINE,Alu
chr1	1252248	A	G	0.00055	CPSF3L	-	FALSE	AluSx	SINE,Alu
chr14	23794554	G	A	0.00966	BCL2L2-PABPN1,PABPN1	+	FALSE	A-rich	SINE,Alu
chr1	3545194	C	G	0.00176	TPRG1L	+	FALSE
chr1	23884661	G	A	0.00205	ID3	-	FALSE
chr2	98089475	T	A	0.00385	LOC100506076,LOC100506123	-	FALSE
chr2	88327464	C	T	0.00046	KRCC1	-	FALSE
chr16	10623566	T	C	0.00019	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	229652587	T	C	0.00732	ABCB10	-	FALSE
chr5	140798639	G	C	3.89156E-05	PCDHGA1,PCDHGA2,PCDHGA3,PCDHGB1,PCDHGA4,PCDHGB2,PCDHGA5,PCDHGB3,PCDHGA6,PCDHGA7,PCDHGB4,PCDHGA8,PCDHGB5,PCDHGA9,PCDHGB6,PCDHGA10,PCDHGB7	+	FALSE
chr1	144604425	C	T	0.00299	NBPF20	+	FALSE
chr2	27466552	G	C	0.00396	CAD	+	FALSE
chr8	71550832	T	C	0.00234	LACTB2-AS1,LACTB2	+,-	FALSE
chr16	29707549	A	G	0.00025	QPRT	+	TRUE	AluJr	SINE,Alu
chr1	179044169	A	G	0.00039	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	10517276	T	C	0.00252		.	FALSE	AluJr	SINE,Alu
chr6	13790931	T	C	0.00122	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr2	110373938	T	G	0.00413	SOWAHC	+	FALSE	(GAAT)n	SINE,Alu
chr1	6282298	T	C	2.81673E-05	ICMT	-	TRUE	AluSz	SINE,Alu
chr14	74388908	T	C	0.00835	ZNF410	+	FALSE
chr1	153609268	G	A	0.00263	CHTOP	+	FALSE
chr5	79923990	T	C	0.00812	DHFR	-	TRUE	AluSp	SINE,Alu
chr2	206861649	T	A	0.00066	INO80D	-	FALSE
chr4	53732381	C	T	0.00433	RASL11B	+	FALSE	(TTTCTTT)n	SINE,Alu
chr1	26898378	C	A	0.00148	RPS6KA1	+	FALSE
chr1	10518616	G	A	0.00379		.	FALSE	AluSx1	SINE,Alu
chr19	23542304	T	C	2.38814E-05	ZNF91	-	TRUE	AluY	SINE,Alu
chr10	1086804	T	A	0.00821	IDI2-AS1,IDI1	+,-	FALSE
chr3	73115786	T	C	3.88619E-05	PPP4R2	+	FALSE
chr1	218617543	G	A	0.00291	TGFB2	+	FALSE
chr1	67874540	T	C	0.00555	SERBP1	-	FALSE
chr3	75779650	G	C	0.00116	ZNF717	-	FALSE
chr4	113108680	A	G	0.00109	C4orf32	+	FALSE
chr1	23419855	T	C	0.00555	LUZP1	-	FALSE
chr1	155851620	A	G	0.00066	SYT11	+	TRUE	AluSq2	SINE,Alu
chr1	11979807	C	A	0.00574	KIAA2013	-	FALSE
chr1	92946618	A	G	0.00062	GFI1	-	FALSE
chr4	17804279	G	A	0.00606	DCAF16	-	FALSE	(A)n	SINE,Alu
chr1	44088112	G	T	0.00822	PTPRF	+	FALSE	(T)n	SINE,Alu
chr14	90509587	G	T	0.00203	TDP1	+	FALSE
chr7	99055940	T	C	0.00289	ATP5J2-PTCD1,ATP5J2	-	FALSE
chr2	61416406	T	G	0.00010	USP34	-	FALSE	AluSc8	SINE,Alu
chr1	78029102	G	A	0.00086	ZZZ3	-	FALSE
chr3	57549504	A	G	0.00384	PDE12	+	TRUE	AluJb	SINE,Alu
chr1	77759578	A	G	0.00404	AK5	+	FALSE
chr22	31744347	A	G	0.00113	LINC01521	+	TRUE	AluSp	SINE,Alu
chr1	67874697	T	C	0.00163	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	10517564	T	C	0.00371		.	FALSE	AluSx1	SINE,Alu
chr2	198572082	T	C	0.00093	MARS2	+	FALSE
chr6	13790931	T	C	0.00948	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr5	96366330	G	C	0.00251		.	FALSE	(TG)n	SINE,Alu
chr16	719933	T	C	0.00067	RHOT2	+	FALSE
chr6	44222157	G	A	0.00856	SLC35B2	-	FALSE
chr5	140751128	C	G	0.00647	PCDHGA1,PCDHGA2,PCDHGA3,PCDHGB1,PCDHGA4,PCDHGB2,PCDHGA5,PCDHGB3	+	FALSE
chr5	61683960	A	G	0.00491		.	FALSE
chr7	156763172	A	G	0.00874	NOM1	+	TRUE	AluSx	SINE,Alu
chr2	64863970	C	T	9.52027E-09	SERTAD2	-	FALSE
chr3	15296357	A	T	3.39714E-05	SH3BP5,SH3BP5-AS1	+,-	FALSE
chr1	169101270	T	G	0.00036	ATP1B1	+	FALSE	(T)n	SINE,Alu
chr1	33149333	A	G	0.00980	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	1344749	A	G	3.37361E-05		.	FALSE	AluSx1	SINE,Alu
chr4	165998226	T	C	0.00754	TMEM192	-	TRUE	AluSx	SINE,Alu
chr1	16921146	T	C	0.00039	NBPF1	-	FALSE
chr1	148251079	T	C	0.00880	NBPF8,NBPF14,NBPF9	-	FALSE	L1MC4	SINE,Alu
chr2	7036682	A	T	0.00335	RSAD2	+	FALSE
chr1	1431502	G	A	0.00127	ATAD3B	+	FALSE
chr1	16889414	T	C	0.00679	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	32953296	A	G	5.26589E-05	ZBTB8B	+	TRUE	AluSz	SINE,Alu
chr1	160965379	T	C	0.00081	F11R	-	TRUE	AluSc	SINE,Alu
chr1	15755248	C	T	0.00405	EFHD2	+	FALSE
chr1	201845899	G	T	1.72907E-05	IPO9	+	FALSE
chr1	36068210	T	C	0.00025	PSMB2	-	TRUE	AluSc	SINE,Alu
chr14	23795222	T	G	0.00162	BCL2L2-PABPN1,PABPN1	+	FALSE
chr1	55316322	A	G	0.00929	DHCR24	-	FALSE
chr2	72968439	T	C	0.00148	EXOC6B	-	FALSE
chr1	119683390	G	A	0.00283	LOC101929147	+	FALSE
chr1	10521172	T	C	0.00244	DFFA	-	TRUE	AluY	SINE,Alu
chr10	54069186	C	T	0.00089	PRKG1-AS1	-	FALSE
chr4	152025795	T	A	0.00516	RPS3A	+	FALSE
chr4	17629434	A	G	0.00661		.	FALSE	AluSx3	SINE,Alu
chr1	155161725	G	A	0.00240	MUC1	-	FALSE
chr6	97592900	C	A	0.00076	MMS22L	-	FALSE
chr1	32638775	A	T	0.00949	KPNA6	+	FALSE	(A)n	SINE,Alu
chr2	171850175	G	T	0.00054	TLK1	-	FALSE
chr19	53155674	T	C	1.27993E-05	ZNF83	-	TRUE	AluSg	SINE,Alu
chr6	37142192	C	T	0.00850	PIM1	+	FALSE
chr5	125961079	A	G	0.00258	PHAX	+	TRUE	AluSz	SINE,Alu
chr1	881627	G	A	2.43828E-05	NOC2L	-	FALSE
chr1	713710	G	C	0.00448	LOC100288069	-	FALSE	FRAM	SINE,Alu
chr4	186081819	C	T	3.85218E-06	CFAP97	-	FALSE
chr1	212114666	C	G	0.00858	INTS7	-	FALSE
chr3	179117164	T	C	0.00234	GNB4	-	FALSE	AluSz	SINE,Alu
chr8	56985612	G	T	0.00028	RPS20	-	FALSE
chr2	37330611	T	C	0.00835		.	FALSE	AluSq2	SINE,Alu
chr19	42375624	A	G	0.00049		.	FALSE	AluSx	SINE,Alu
chr20	25428617	A	G	0.00622	GINS1	+	FALSE	AluJb	SINE,Alu
chr20	35520223	T	C	0.00111	TLDC2	+	FALSE	AluSx3	SINE,Alu
chr4	120219638	A	T	0.00970	C4orf3	-	FALSE
chr19	63721	T	G	0.00602	WASH5P	-	FALSE
chr1	92977228	T	C	0.00206	EVI5	-	TRUE	AluJr	SINE,Alu
chr1	16112795	A	G	1.78234E-05	FBLIM1	+	FALSE
chr1	16927379	T	A	0.00864	NBPF1	-	FALSE
chr1	16889563	C	A	0.00090	NBPF1	-	FALSE
chr1	144931392	G	A	0.00286	NBPF20,PDE4DIP	+,-	FALSE
chr5	122165472	C	T	0.00147	SNX2	+	FALSE	(AC)n	SINE,Alu
chr19	42753034	A	G	0.00883	ERF	-	FALSE
chr20	25427756	A	G	0.00396	GINS1	+	TRUE	AluSz	SINE,Alu
chr3	156259288	T	C	0.00072	SSR3	-	TRUE	AluSq2	SINE,Alu
chr6	99319240	T	A	0.00842		.	FALSE	Cheshire	SINE,Alu
chr1	45244053	A	G	0.00562	RPS8	+	FALSE
chr1	100548780	A	T	0.00791	MFSD14A	+	FALSE
chr1	10520532	T	C	0.00150		.	FALSE	AluSx1	SINE,Alu
chr1	158067060	T	A	0.00778	KIRREL	+	FALSE
chr2	37328034	T	C	1.98403E-05		.	FALSE
chr1	10520702	T	C	0.00438	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	3545199	G	C	0.00188	TPRG1L	+	FALSE
chr2	227597207	T	C	0.00209	IRS1	-	FALSE	(TA)n	SINE,Alu
chr12	125511404	A	G	0.00201	THRIL	-	FALSE	AluSx1	SINE,Alu
chr8	146200325	T	C	0.00599	ZNF252P	-	TRUE	AluSc	SINE,Alu
chr1	145512074	A	G	0.00014	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	16892276	T	C	0.00209	NBPF1	-	FALSE
chr4	10099340	T	C	0.00000	WDR1	-	FALSE
chr12	125269489	C	T	0.00817	SCARB1	-	FALSE
chr20	43707842	A	G	0.00100	STK4	+	TRUE	AluJb	SINE,Alu
chr1	145293515	A	G	4.09953E-06	NBPF20,NBPF10	+	FALSE
chr1	19543457	T	C	0.00101	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr17	49042381	T	C	0.00931	SPAG9	-	TRUE	AluJb	SINE,Alu
chr1	28422194	A	C	0.00018		.	FALSE
chr1	9331254	A	G	0.00793	H6PD	+	TRUE	AluSx	SINE,Alu
chr1	168214098	T	G	0.00134		.	FALSE
chr1	205686523	G	T	2.43057E-05	NUCKS1	-	FALSE
chr3	40503561	A	T	0.00012	RPL14	+	FALSE
chr3	53220215	G	A	2.78975E-05	PRKCD	+	FALSE
chr3	98299365	T	G	3.92075E-11	CPOX	-	FALSE
chr1	78142856	T	C	0.00086	ZZZ3	-	TRUE	AluSx	SINE,Alu
chr1	36068275	T	C	0.00048	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	112170157	C	G	0.00335	RAP1A	+	FALSE	L1ME4a	SINE,Alu
chr1	45973928	G	A	0.00093	MMACHC	+	FALSE
chr16	15219677	A	G	0.00136	PDXDC1,PKD1P6-NPIPP1	+,-	FALSE
chr2	178406767	A	T	0.00416	AGPS	+	FALSE
chr1	6282318	T	C	0.00418	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	207943385	A	G	0.00558	CD46	+	TRUE	AluSx1	SINE,Alu
chr3	49714225	T	C	0.00023	APEH	+	FALSE
chr19	58372763	A	G	0.00479	ZNF587	+	TRUE	AluSx	SINE,Alu
chr3	15114353	T	C	8.61483E-05	RBSN	-	TRUE	AluY	SINE,Alu
chr1	145509493	A	G	0.00264	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr1	24862643	T	G	0.00933	RCAN3	+	FALSE
chr3	195776630	T	A	7.10429E-08	TFRC	-	FALSE
chr14	76662778	C	T	0.00261	GPATCH2L	+	FALSE
chr1	54571374	A	G	0.00280	TCEANC2	+	TRUE	AluSc	SINE,Alu
chr1	145512937	A	G	1.47906E-06	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	158067059	A	C	0.00655	KIRREL	+	FALSE
chr5	96366326	G	C	0.00120		.	FALSE	(TG)n	SINE,Alu
chr2	85772408	G	A	0.00278	GGCX	-	FALSE
chr3	16357708	A	G	0.00098	RFTN1	-	FALSE
chr1	206635244	T	A	0.00195	SRGAP2	+	FALSE
chr1	899810	G	A	3.12519E-10	KLHL17	+	FALSE
chr1	173864944	G	T	2.40127E-05		.	FALSE
chr19	19791273	A	G	0.00121	ZNF101	+	TRUE	AluSq2	SINE,Alu
chr1	150479901	C	T	0.00228	TARS2	+	FALSE	AluSc8	SINE,Alu
chr19	53914418	A	G	0.00891	ZNF765	+	TRUE	AluSx	SINE,Alu
chr5	56177846	G	C	0.00952	MAP3K1	+	FALSE
chr1	3545189	T	G	0.00027	TPRG1L	+	FALSE
chr14	105270483	G	T	7.92193E-06	ZBTB42	+	FALSE
chr1	36068237	T	C	0.00974	PSMB2	-	TRUE	AluSc	SINE,Alu
chr3	172115474	A	G	0.00012	FNDC3B	+	FALSE	(A)n	SINE,Alu
chr2	37331531	T	C	0.00389		.	FALSE	AluJb	SINE,Alu
chr4	17802920	T	C	0.00805	DCAF16	-	TRUE	AluSz	SINE,Alu
chr3	57548976	A	G	0.00132	PDE12	+	TRUE	FRAM	SINE,Alu
chr1	205583610	T	C	0.00070	ELK4	-	FALSE
chr14	23441380	T	C	0.00102	AJUBA	-	TRUE	Eutr2	SINE,Alu
chr1	1683565	G	A	0.00269	NADK	-	FALSE
chr3	45960560	T	A	0.00201	FYCO1	-	FALSE
chr1	87794771	G	C	0.00989	LMO4	+	FALSE
chr3	196670092	C	G	0.00393	NCBP2-AS2	+	FALSE
chr1	55316322	A	G	0.00266	DHCR24	-	FALSE
chr5	149363414	A	G	0.00503	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr16	87864349	C	A	0.00981	SLC7A5	-	FALSE
chr1	11782984	A	G	0.00107		.	FALSE	AluSx	SINE,Alu
chr1	33148213	A	G	0.00080	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	1345051	A	G	0.00816		.	FALSE	AluSg	SINE,Alu
chr1	1252468	T	C	0.00182	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr1	31532379	A	G	0.00092	PUM1	-	FALSE
chr1	1252513	T	C	0.00013	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr2	204294497	C	T	0.00203	ABI2	+	FALSE
chr1	67874252	C	A	0.00558	SERBP1	-	FALSE
chr1	33148706	A	G	0.00038	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr6	25600772	A	G	0.00269	CARMIL1	+	FALSE
chr4	165998692	T	C	0.00568	TMEM192	-	TRUE	AluSg	SINE,Alu
chr1	33148736	A	G	0.00525	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	115259768	T	C	0.00156	CSDE1	-	FALSE
chr1	179042905	A	G	0.00972	FAM20B	+	TRUE
chr6	41900765	A	G	0.00256	BYSL	+	FALSE
chr3	20025677	G	T	0.00116	RAB5A,PP2D1	+,-	FALSE
chr1	47840953	A	G	0.00404	CMPK1	+	FALSE
chr6	153292178	C	T	0.00783	FBXO5	-	FALSE
chr1	120164552	G	A	0.00023	ZNF697	-	FALSE
chr4	128995640	G	A	0.00567	LARP1B	+	FALSE
chr14	53242639	T	C	1.43651E-05	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr3	14175262	T	C	3.06250E-10	TMEM43	+	FALSE
chr2	20648946	C	T	0.00531	RHOB	+	FALSE
chr6	29910586	G	A	1.69263E-05		.	FALSE

RBP	SSRP1
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR422JMS
Platform	HiSeq
Pubmed ID	32252787

SSRP1 - Target Gene Network