Dataset Overview
RBP
FUBP3
Knock-Method
shRNA
RBP Family
KH_1
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR755KOM
Platform
HiSeq
Pubmed ID
32252787
FUBP3 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of FUBP3
Show
10
25
50
100
entries
Search:
Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
15.89
20.16
0.75380
7.01595E-08
3.73910E-07
A1CF
30.66
47.63
0.60365
1.06810E-13
1.27833E-12
A4GALT
0.85
0.15
-2.46558
4.60295E-07
2.14409E-06
AAED1
6.5
5.84
-0.29446
0.01777
0.03311
AAGAB
8.9
3.55
-1.19106
4.75589E-21
1.16049E-19
AAMDC
23.01
15.04
-0.40808
0.00391
0.00867
AAMP
118.35
119.38
0.22044
0.00931
0.01873
AARS
64.38
38.02
-0.48843
1.45162E-07
7.34771E-07
AASDHPPT
18.09
9.04
-1.19490
1.02550E-27
4.45317E-26
AASS
8.55
15.06
0.99700
9.36818E-23
2.68263E-21
Showing 1 to 10 of 8,030 entries
Previous
1
2
3
4
5
…
803
Next
Function Analysis of Target Genes of FUBP3
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A1CF
52622648_52622741_52619601_52619745_52623792_52623840
0.00035
-0.209
DataSet_01_339
View details
A1CF
52642232_52642465_52619601_52619745_52645340_52645435
0.00209
-0.024
DataSet_01_339
View details
ABCC6P1
18585641_18585757_18584198_18584382_18586082_18586208
0.00492
0.243
DataSet_01_339
View details
ABCD4
74766250_74766378_74763035_74763152_74766852_74766971
0.00781
-0.026
DataSet_01_339
View details
ABI1
27044583_27044670_27040526_27040712_27054146_27054247
0.00658
0.107
DataSet_01_339
View details
ABLIM1
116207638_116207779_116205070_116205162_116211382_116211430
0.00379
0.042
DataSet_01_339
View details
AC093838.4
132277386_132277515_132277107_132277239_132277669_132277994
0.00261
-0.148
DataSet_01_339
View details
ACOT9
23752409_23752484_23751288_23751334_23754035_23754133
0.00051
-0.219
DataSet_01_339
View details
ACTR1A
104241757_104241932_104240888_104240929_104242767_104242860
0.00215
-0.167
DataSet_01_339
View details
ACTR1A
104242767_104242860_104241757_104241932_104243916_104244133
0.00713
-0.33
DataSet_01_339
View details
Showing 1 to 10 of 225 entries
Previous
1
2
3
4
5
…
23
Next
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A1CF
52623792_52623840_52642232_52642465_52619601_52619745
0.00010
-0.286
DataSet_01_339
View details
ALB
74272345_74272478_74274310_74274522_74270832_74270890
0.00000
-0.195
DataSet_01_339
View details
ASGR1
7080528_7080645_7081812_7081901_7080299_7080395
0.00536
0.029
DataSet_01_339
View details
ASPSCR1
79974351_79974403_79974675_79974745_79970106_79970159
0.00736
-0.098
DataSet_01_339
View details
ATRN
3520868_3520982_3526408_3526537_3515899_3515983
0.00069
0.13
DataSet_01_339
View details
BOK
242498869_242499118_242501762_242501891_242498135_242498408
0.00374
-0.326
DataSet_01_339
View details
BPIFB2
31607385_31607556_31608133_31608201_31606442_31606628
0.00018
-0.048
DataSet_01_339
View details
CCDC58
122081814_122081874_122087022_122087169_122078634_122078766
0.00360
0.099
DataSet_01_339
View details
CD164
109691613_109691670_109697276_109697315_109687720_109690220
0.00855
0.09
DataSet_01_339
View details
CEACAM1
43020924_43021017_43023099_43023387_43016501_43016631
0.00319
-0.022
DataSet_01_339
View details
Showing 1 to 10 of 69 entries
Previous
1
2
3
4
5
6
7
Next
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ADH4
100065347_100065448_100065355_100065448_100063829_100063931
0.00976
-0.033
DataSet_01_339
View details
AKAP8L
15509440_15510221_15510112_15510221_15508524_15508666
0.00002
0.121
DataSet_01_339
View details
APEX1
20923736_20923932_20923736_20923862_20924072_20924260
0.00487
0.032
DataSet_01_339
View details
ASGR1
7080299_7080395_7080321_7080395_7080148_7080220
0.00791
-0.017
DataSet_01_339
View details
C17orf76-AS1
16342640_16343017_16342640_16342728_16343498_16343567
0.00214
-0.053
DataSet_01_339
View details
CERS4
8320687_8320920_8320687_8320763_8321119_8321170
0.00395
-0.04
DataSet_01_339
View details
CFB
31915732_31915971_31915732_31915858_31916150_31916289
0.00835
0.028
DataSet_01_339
View details
EIF1
39846029_39846260_39846029_39846193_39846339_39846441
0.00395
0.036
DataSet_01_339
View details
ENO2
7025834_7026074_7025834_7025893_7026201_7026423
0.00632
-0.076
DataSet_01_339
View details
ERAP1
96121491_96121675_96121526_96121675_96119627_96119784
0.00450
-0.201
DataSet_01_339
View details
Showing 1 to 10 of 29 entries
Previous
1
2
3
Next
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACTG1
79478213_79478829_79478213_79478652_79478928_79479168
0.00000
0.027
DataSet_01_339
View details
AOC3
41006292_41006750_41006464_41006750_41006094_41006172
0.00147
-0.533
DataSet_01_339
View details
ASGR1
7081812_7081990_7081812_7081907_7082508_7082883
0.00000
0.067
DataSet_01_339
View details
ASGR1
7081812_7081990_7081812_7081952_7082508_7082883
0.00010
0.206
DataSet_01_339
View details
ASGR1
7081812_7081990_7081812_7081918_7082508_7082883
0.00602
0.047
DataSet_01_339
View details
BRD8
137502206_137502416_137502206_137502299_137503622_137503767
0.00602
-0.119
DataSet_01_339
View details
C17orf76-AS1
16342894_16343567_16343498_16343567_16342640_16342728
0.00003
-0.06
DataSet_01_339
View details
CERS4
8315959_8316133_8315993_8316133_8275589_8275746
0.00938
-0.209
DataSet_01_339
View details
CFB
31910735_31910876_31910836_31910876_31907007_31907097
0.00211
-0.032
DataSet_01_339
View details
CIB1
90775450_90775659_90775450_90775559_90776900_90776935
0.00848
0.1
DataSet_01_339
View details
Showing 1 to 10 of 40 entries
Previous
1
2
3
4
Next
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9220307_9220820_9220307_9220435_9220778_9220820
0.00000
0.078
DataSet_01_339
View details
ACTG1
79477952_79478652_79477952_79478134_79478213_79478652
0.00010
0.025
DataSet_01_339
View details
AKR1B1
134132049_134132813_134132049_134132133_134132731_134132813
0.00873
-0.047
DataSet_01_339
View details
ALAD
116152872_116153213_116152872_116152956_116153077_116153213
0.00699
0.326
DataSet_01_339
View details
ANAPC5
121783641_121784808_121783641_121783834_121784698_121784808
0.00044
0.117
DataSet_01_339
View details
ANAPC5
121764898_121766300_121764898_121765034_121766118_121766300
0.00288
0.077
DataSet_01_339
View details
APEX1
20923736_20924260_20923736_20923862_20924072_20924260
0.00147
0.074
DataSet_01_339
View details
ATXN2L
28847253_28848558_28847253_28847443_28848071_28848558
0.00602
-0.097
DataSet_01_339
View details
AUP1
74755379_74755616_74755379_74755448_74755543_74755616
0.00973
0.025
DataSet_01_339
View details
C17orf76-AS1
16342640_16343017_16342640_16342728_16342841_16343017
0.00020
0.032
DataSet_01_339
View details
Showing 1 to 10 of 77 entries
Previous
1
2
3
4
5
…
8
Next
Differential Variants in RNA (DVRs)
Show
10
25
50
100
entries
Search:
Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
10518733
T
C
0.00399
.
FALSE
AluSx1
SINE,Alu
chr1
20978451
T
C
0.00193
PINK1-AS,DDOST
-
TRUE
AluY
SINE,Alu
chr1
10043043
A
G
0.00529
NMNAT1
+
TRUE
AluSc
SINE,Alu
chr1
156044213
G
T
7.72130E-05
MEX3A
-
FALSE
(T)n
SINE,Alu
chr1
28598287
C
T
0.00188
SESN2
+
FALSE
chr1
6283296
T
C
0.00122
ICMT
-
TRUE
AluSx3
SINE,Alu
chr1
59122056
G
C
1.57132E-06
MYSM1
-
FALSE
chr1
1344757
A
G
0.00024
.
FALSE
AluSx1
SINE,Alu
chr1
53289892
A
G
0.00178
ZYG11B
+
TRUE
FRAM
SINE,Alu
chr1
25894460
T
A
0.00520
LDLRAP1
+
FALSE
MIRb
SINE,Alu
Showing 1 to 10 of 457 entries
Previous
1
2
3
4
5
…
46
Next
Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression