RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr6	150047430	T	C	0.00568	NUP43	-	TRUE	AluSc	SINE,Alu
chr2	31557839	G	T	0.00145	XDH	-	FALSE	AluJr	SINE,Alu
chr2	181737842	C	T	0.00350	SCHLAP1	+	FALSE
chr1	10520145	T	C	0.00590		.	FALSE	AluSx	SINE,Alu
chr4	25236017	T	C	0.00291	PI4K2B	+	FALSE
chr1	1683565	G	A	7.19943E-05	NADK	-	FALSE
chr3	129033736	T	C	0.00309	H1FX	-	FALSE
chr7	2290522	C	T	0.00517	NUDT1	+	FALSE
chr3	10192825	A	G	0.00042	VHL	+	TRUE	AluSx1	SINE,Alu
chr4	190883001	C	G	0.00297	FRG1	+	FALSE
chr8	141461185	A	G	0.00793	TRAPPC9	-	FALSE
chr2	242512736	G	C	0.00492	BOK	+	FALSE
chr10	47098568	C	T	0.00178	LINC00842	-	FALSE
chr2	234203547	T	C	0.00476	ATG16L1	+	FALSE
chr1	144828845	A	T	0.00178	NBPF20,NBPF9	+	FALSE
chr1	179072966	C	T	0.00107	ABL2	-	FALSE	MIRc	SINE,Alu
chr2	86248309	T	C	0.00808	LOC90784	-	FALSE
chr8	17796338	G	T	4.50000E-10	PCM1	+	FALSE
chr4	26433556	A	C	3.10862E-15	RBPJ	+	FALSE
chr1	32385071	T	A	0.00436	PTP4A2	-	FALSE
chr1	36770607	T	C	0.00171	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	33148740	A	G	0.00210	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr14	24884880	T	G	0.00491	NYNRIN	+	FALSE
chr1	35650162	C	A	0.00106	SFPQ	-	FALSE
chr1	27202963	C	T	0.00106		.	FALSE	AluSq2	SINE,Alu
chr9	132266644	A	G	0.00081	LINC00963	+	TRUE	AluSx	SINE,Alu
chr1	168220427	A	G	0.00670		.	FALSE	AluSz6	SINE,Alu
chr2	61277463	A	G	0.00826	PEX13	+	TRUE	AluSx	SINE,Alu
chr1	94995411	C	A	0.00849	F3	-	FALSE	AluSx	SINE,Alu
chr3	123332546	C	G	0.00964	MYLK-AS1,MYLK	+,-	FALSE
chr2	32535692	A	G	0.00236		.	FALSE	AluJb	SINE,Alu
chr1	28826085	A	G	0.00212	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr2	200792052	G	A	0.00378	C2orf69	+	FALSE
chr1	16890130	A	C	0.00753	NBPF1	-	FALSE
chr4	190883001	C	G	0.00319	FRG1	+	FALSE
chr1	32697071	C	A	0.00134	EIF3I	+	FALSE	AluSp	SINE,Alu
chr11	6703162	A	T	0.00726	MRPL17	-	FALSE
chr1	9331101	A	G	0.00026	H6PD	+	FALSE	AluSx	SINE,Alu
chr16	81064534	A	G	0.00480	CENPN	+	TRUE	AluSg	SINE,Alu
chr3	100083460	G	A	0.00041	TOMM70	-	FALSE	FAM	SINE,Alu
chr3	46623292	T	C	0.00408	TDGF1	+	FALSE	AluSx3	SINE,Alu
chr3	98531342	A	G	0.00607	DCBLD2	-	FALSE
chr1	145689843	A	G	4.95254E-05	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr1	40219280	T	C	0.00169	PPIE	+	FALSE
chr2	37331750	T	C	0.00067		.	FALSE	AluJb	SINE,Alu
chr1	36522615	A	G	0.00658		.	FALSE	AluSc	SINE,Alu
chr2	201842323	T	C	0.00390	FAM126B	-	TRUE	AluJb	SINE,Alu
chr3	156258230	T	C	0.00176	SSR3	-	TRUE	AluYk3	SINE,Alu
chr16	81064492	A	G	0.00935	CENPN	+	TRUE	AluSg	SINE,Alu
chr2	32533707	A	G	0.00395		.	FALSE	AluSp	SINE,Alu
chr2	74090064	A	T	0.00197	STAMBP	+	FALSE
chr1	1344893	A	G	7.94078E-08		.	FALSE	AluSg	SINE,Alu
chr1	19984107	G	A	0.00963	MINOS1-NBL1,NBL1	+	FALSE
chr7	131188652	G	C	0.00684	PODXL	-	FALSE	MIR3	SINE,Alu
chr19	53914417	A	G	0.00013	ZNF765	+	TRUE	AluSx	SINE,Alu
chr1	36534086	A	G	0.00157		.	FALSE	FLAM_A	SINE,Alu
chr17	80899281	G	A	0.00053	TBCD	+	FALSE
chr1	53289892	A	G	0.00070	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr6	42857179	C	A	0.00492	RPL7L1	+	FALSE	AluSp	SINE,Alu
chr15	41573612	C	A	0.00355	CHP1	+	FALSE
chr9	19376249	G	T	5.55883E-05		.	FALSE
chr12	56510706	A	G	0.00053	RPL41	+	FALSE
chr1	94335332	G	T	0.00973	DNTTIP2	-	FALSE
chr2	86850798	A	G	0.00267	RNF103-CHMP3,RNF103	-	FALSE
chr1	9163328	T	C	0.00150		.	FALSE	AluSp	SINE,Alu
chr5	125962568	A	G	0.00015	PHAX	+	TRUE	AluSz	SINE,Alu
chr1	1650787	T	C	0.00071	CDK11B,CDK11A	-	FALSE
chr1	10517672	T	C	0.00070		.	FALSE	AluSx1	SINE,Alu
chr1	25889571	G	A	0.00344	LDLRAP1	+	FALSE
chr2	69685864	A	C	0.00610	AAK1	-	FALSE	(CA)n	SINE,Alu
chr1	109465167	T	A	0.00233	GPSM2	+	FALSE
chr2	37331119	T	C	0.00122		.	FALSE	AluSx1	SINE,Alu
chr1	74665493	G	A	7.81871E-05	FPGT-TNNI3K,FPGT	+	FALSE
chr14	23441380	T	C	0.00102	AJUBA	-	TRUE	Eutr2	SINE,Alu
chr5	122165512	C	A	0.00276	SNX2	+	FALSE
chr3	10192617	A	G	2.94246E-06	VHL	+	TRUE	AluSx1	SINE,Alu
chr9	86553587	G	A	0.00556	C9orf64	-	FALSE
chr1	65720330	A	C	0.00211		.	FALSE
chr1	204524546	A	G	0.00054	MDM4	+	TRUE	AluY	SINE,Alu
chr1	229652587	T	C	0.00732	ABCB10	-	FALSE
chr1	109475629	A	G	0.00835	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	11982544	T	C	4.37710E-05	KIAA2013	-	FALSE
chr17	4929861	A	G	0.00705	KIF1C	+	TRUE	AluJb	SINE,Alu
chr1	204521160	A	G	0.00231	MDM4	+	TRUE	AluSp	SINE,Alu
chr1	1595602	A	G	9.14189E-05	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr1	2161135	A	G	0.00028	SKI	+	FALSE
chr3	196771049	T	C	0.00010	DLG1	-	FALSE
chr1	10520258	T	C	0.00746		.	FALSE	AluSx	SINE,Alu
chr1	121133770	A	G	0.00295	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr1	28800380	C	A	0.00186	PHACTR4	+	FALSE
chr1	153520954	C	T	0.00910	LOC101928034,S100A3	+,-	FALSE
chr12	109039869	T	C	0.00795	CORO1C	-	FALSE
chr17	65335316	T	C	0.00296	PSMD12	-	TRUE	AluSx	SINE,Alu
chr12	51324122	A	G	0.00226	METTL7A	+	TRUE	AluSq2	SINE,Alu
chr2	61150192	C	A	0.00436	REL	+	FALSE	AluSz6	SINE,Alu
chr4	66439707	T	C	0.00148	EPHA5	-	FALSE
chr5	130536797	A	G	0.00841	LYRM7	+	TRUE	AluSx4	SINE,Alu
chr1	46075661	A	G	0.00071	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	121115958	T	C	0.00860	SRGAP2-AS1,SRGAP2D,SRGAP2B,SRGAP2C	+,-	FALSE
chr1	53291425	A	G	0.00507	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	53679610	G	A	0.00073	CPT2	+	FALSE	AluSz	SINE,Alu
chr1	110040310	A	G	2.45230E-05	CYB561D1	+	FALSE
chr1	117117182	C	T	0.00270	IGSF3	-	FALSE
chr1	179044206	A	G	0.00015	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	47716043	A	G	0.00794	STIL	-	FALSE
chr1	109479978	G	T	0.00057	CLCC1	-	FALSE
chr1	10517525	T	C	0.00775		.	FALSE	AluSx1	SINE,Alu
chr6	29911284	T	C	0.00019		.	FALSE
chr10	102121601	A	G	0.00000	SCD	+	TRUE	MLT1L	SINE,Alu
chr1	144828688	C	T	0.00024	NBPF20,NBPF9	+	FALSE
chr1	32799510	T	G	0.00048	MARCKSL1	-	FALSE
chr3	152555188	G	T	0.00016	P2RY1	+	FALSE
chr1	214524566	T	C	0.00040	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	26143726	G	T	0.00560	SEPN1	+	FALSE	AluSx	SINE,Alu
chr3	14526625	T	G	0.00414	SLC6A6	+	FALSE
chr1	45975628	A	G	0.00465	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr4	2940164	T	C	0.00381	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr19	39433142	T	A	0.00215	FBXO17	-	FALSE	AluJb	SINE,Alu
chr1	226259443	C	A	0.00927	H3F3AP4,H3F3A	+	FALSE
chr1	23240263	G	A	5.22984E-05	EPHB2	+	FALSE
chr2	171850175	G	T	0.00054	TLK1	-	FALSE
chr1	32372387	A	C	0.00757	PTP4A2	-	FALSE	(CA)n	SINE,Alu
chr1	14106404	G	C	0.00156	PRDM2	+	FALSE
chr2	61764916	A	C	0.00361	XPO1	-	FALSE	(AC)n	SINE,Alu
chr3	10005650	C	T	0.00698	EMC3	-	FALSE
chr7	24731065	C	T	0.00414	MPP6	+	FALSE	(TGTATG)n	SINE,Alu
chr1	33149443	A	G	2.90388E-05	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	33147942	A	G	0.00423	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr1	55317685	G	A	0.00121	DHCR24	-	FALSE	MIRb	SINE,Alu
chr1	19566382	A	G	0.00513	LOC101927895,EMC1	+,-	FALSE
chr1	10519888	T	C	0.00878		.	FALSE	AluJr	SINE,Alu
chr5	134086670	C	A	0.00585	CAMLG	+	FALSE
chr1	11347150	C	A	0.00380	UBIAD1	+	FALSE
chr1	87213182	A	T	0.00072	SH3GLB1	+	FALSE
chr1	148558170	T	C	0.00235		.	FALSE	AluJb	SINE,Alu
chr2	161130868	A	C	0.00297	RBMS1	-	FALSE
chr1	53289892	A	G	0.00505	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr14	53243434	T	C	5.94655E-10	GNPNAT1	-	TRUE	AluSx3	SINE,Alu
chr9	28403	G	T	1.21037E-06	WASH1	-	FALSE	MIR	SINE,Alu
chr7	6501830	G	A	0.00110	KDELR2	-	FALSE
chr1	1255401	G	T	0.00216	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr1	145511991	A	G	0.00044	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr2	75888160	A	C	0.00368	MRPL19	+	FALSE	L1MB4	SINE,Alu
chr3	32496328	C	A	0.00013	CMTM7	+	FALSE
chr1	21808159	G	A	9.34000E-05	NBPF3	+	FALSE
chr1	19543356	T	C	0.00256	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	19586532	A	G	0.00769	MRTO4	+	TRUE	AluSz	SINE,Alu
chr17	49042206	T	C	0.00030	SPAG9	-	TRUE	AluJb	SINE,Alu
chr1	51822219	G	A	0.00223	EPS15	-	FALSE
chr2	176792536	G	T	0.00211	LNPK	-	FALSE
chr1	25687621	A	T	0.00256	TMEM50A	+	FALSE
chr1	6704652	C	T	1.57063E-06	DNAJC11	-	FALSE
chr7	100031502	C	T	0.00091	MEPCE	+	FALSE
chr1	15015	G	C	0.00809	WASH7P	-	FALSE
chr1	145273302	A	G	0.00656	NBPF20,NOTCH2NL	+	FALSE
chr1	53712215	G	T	0.00458	LRP8	-	FALSE
chr1	19585545	G	A	0.00696	MRTO4	+	FALSE	AluSc8	SINE,Alu
chr1	3730400	T	C	0.00018	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	145826918	G	C	0.00829	NBPF20,NBPF10,GPR89A	+,-	FALSE
chr1	33149508	A	G	0.00871	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr5	175811091	G	A	0.00592	NOP16	-	FALSE
chr2	37331065	T	C	0.00585		.	FALSE	AluSx1	SINE,Alu
chr1	93828523	T	A	0.00155		.	FALSE
chr6	36894338	A	G	0.00607	C6orf89	+	FALSE	GA-rich	SINE,Alu
chrX	77083982	T	C	0.00086	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	16889502	T	C	0.00178	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	92862337	A	G	0.00595		.	FALSE	AluSp	SINE,Alu
chr2	132049924	A	G	0.00338	LOC440910	+	FALSE	AluSg4	SINE,Alu
chr3	101576175	T	C	0.00246	NFKBIZ	+	FALSE
chr1	19586520	A	G	6.58771E-06	MRTO4	+	TRUE	AluSz	SINE,Alu
chr3	195415462	G	A	0.00140	LINC00969,SDHAP2	+	FALSE
chr2	87883323	A	G	0.00910		.	FALSE
chr1	45975358	A	G	0.00020	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	20238574	C	T	6.32696E-05	OTUD3	+	FALSE
chr1	26449340	G	A	0.00711	PDIK1L	+	FALSE
chr15	32820819	T	G	0.00718	WHAMMP1	-	FALSE
chr1	1252687	T	C	0.00459	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr1	51873951	G	A	0.00588	EPS15	-	FALSE
chr1	27992824	G	A	0.00503	IFI6	-	FALSE
chr15	42192345	T	C	0.00039	EHD4	-	TRUE
chr1	16259813	A	G	0.00475	SPEN	+	FALSE
chr17	25974348	C	T	0.00160	LGALS9	+	FALSE
chr3	15113810	T	C	0.00201	RBSN	-	TRUE	AluSz6	SINE,Alu
chr3	12613866	T	C	0.00043	MKRN2	+	FALSE
chr1	182543666	T	G	0.00124	RNASEL	-	FALSE
chr1	6282255	T	C	0.00954	ICMT	-	TRUE	AluSz	SINE,Alu
chr2	76672504	A	G	2.97414E-06		.	FALSE	7SK	SINE,Alu
chr2	101622883	T	A	0.00440	RPL31	+	FALSE
chr1	65693725	C	T	0.00202	AK4	+	FALSE
chr9	115447527	T	C	0.00200	INIP	-	TRUE	AluJb	SINE,Alu
chr1	244869241	C	A	0.00213	DESI2	+	FALSE
chr3	49396751	T	C	0.00000	RHOA	-	FALSE
chr12	124146073	A	G	0.00085	GTF2H3	+	FALSE	AluSx4	SINE,Alu
chr1	6314822	T	C	0.00300	GPR153	-	FALSE
chr1	23636278	A	T	0.00442	HNRNPR	-	FALSE
chr1	145689491	A	G	0.00694	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	16944809	G	C	0.00072	CROCCP2	-	FALSE
chr1	10517952	C	A	0.00341		.	FALSE
chr19	18477761	A	G	0.00461	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr3	27763674	T	G	0.00617	EOMES	-	FALSE

RBP	XRN2
Knock-Method	shRNA
RBP Family	XRN_N
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR717SJA
Platform	HiSeq
Pubmed ID	32252787

XRN2 - Target Gene Network