Dataset Overview
RBPFKBP4
Knock-MethodshRNA
RBP FamilyNon-canonical_RBP
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR379VXW
PlatformHiSeq
Pubmed ID32252787

FKBP4 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of FKBP4
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of FKBP4


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr861655619CT0.00475CHD7+FALSE
chr477997064AG0.00283CCNI-FALSE(A)nSINE,Alu
chr452888026AC0.00677SGCB-FALSE
chr1148595665AG0.00141NBPF15+TRUEL1MC4SINE,Alu
chr19163328TC0.00287.FALSEAluSpSINE,Alu
chr111783889AG0.00746.FALSEAluSqSINE,Alu
chr2101893247CA0.00237RNF149-FALSE(A)nSINE,Alu
chr1053456599AG0.00339PRKG1,CSTF2T+,-FALSE
chr3191116133CT0.00032CCDC50+FALSE
chr140537947AC0.00295CAP1+FALSE
chr19740896CT0.00078PIK3CD,PIK3CD-AS2+,-FALSEMLT1F1SINE,Alu
chr1423300642CA0.00266MRPL52+FALSEMIRbSINE,Alu
chr2131129926GT0.00034PTPN18+FALSE
chr1179326882AG0.00020SOAT1+TRUEAluJoSINE,Alu
chr11595539TC0.00053CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr717384887AG4.32861E-08AHR+TRUEAluScSINE,Alu
chr110520178TC2.78615E-06.FALSEAluSxSINE,Alu
chr323962339TA0.00925RPL15+FALSE
chr136534934AG0.00464.FALSEAluJoSINE,Alu
chr1203711876GA0.00444ATP2B4+FALSE
chr128564252AG0.00118ATPIF1+FALSE
chr2131906031CT0.00374PLEKHB2+FALSE
chr119543249TC0.00559LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr110521172TC0.00244DFFA-TRUEAluYSINE,Alu
chr357612271TC0.00831DENND6A,PDE12+,-FALSEAluSpSINE,Alu
chr285772406GA0.00278GGCX-FALSE
chr5149823795AT0.00722RPS14-FALSE
chr1013234356AT3.19668E-07MCM10+FALSE
chr116889414TC0.00679NBPF1-TRUEL1MC4SINE,Alu
chr287821033CA0.00474.FALSE
chr1179041705AT0.00068FAM20B+FALSE
chr224223256AG0.00711UBXN2A+TRUEAluScSINE,Alu
chr140213628AG0.00058PPIE+TRUEFRAMSINE,Alu
chr1541590287AG0.00319OIP5-AS1+FALSE
chr1070742774AT0.00504DDX21+FALSE
chr1726955330AC0.00291KIAA0100-FALSE
chrX24095066GT0.00603EIF2S3+FALSE
chr16582353TC0.00415NOL9-TRUEAluSx1SINE,Alu
chr315113042CT4.09809E-05RBSN-FALSE
chr1150783955TC0.00077ARNT-FALSE(CA)nSINE,Alu
chr1242012149CT0.00510EXO1+FALSE
chr110518875TC0.00127.FALSEAluSx1SINE,Alu
chr1230979247GA0.00137C1orf198-FALSE
chr127533879GA0.00877.FALSE
chr3112319504TC0.00040LINC01279-TRUEAluJbSINE,Alu
chr1116947126CA4.37114E-09ATP1A1,ATP1A1-AS1+,-FALSE
chr116577794CT0.00805FBXO42-FALSE
chr167874270GA0.00019SERBP1-FALSE
chr145975669AG0.00695MMACHC+TRUEAluSx4SINE,Alu
chr596366330GC0.00251.FALSE(TG)nSINE,Alu
chr564016339CT6.96791E-06SREK1IP1-FALSE
chr1179042555AG0.00922FAM20B+TRUEAluSx1SINE,Alu
chr5176863519GC0.00567GRK6+FALSE
chr838829839AG0.00184PLEKHA2+TRUEAluJr4SINE,Alu
chr238522138GT0.00769ATL2-FALSE
chrM8859GA0.00929.FALSE
chr1117530217CT0.00048PTGFRN+FALSE
chr141487492CG0.00221SLFNL1-AS1+FALSE
chr192941357AG0.00296GFI1-FALSE
chr131532379AG0.00092PUM1-FALSE
chr1156692049AT6.25184E-05ISG20L2-FALSE
chr167874697TC0.00642SERBP1-TRUEAluSx3SINE,Alu
chr11255412CA0.00751CPSF3L-FALSE(GCAGG)nSINE,Alu
chr310192811AG0.00149VHL+TRUEAluSx1SINE,Alu
chr2208619461AG2.24939E-05CCNYL1+TRUEFAMSINE,Alu
chr116889138TC0.00356NBPF1-FALSEL1MC4SINE,Alu
chr3183900836GA2.54977E-05AP2M1+FALSE
chr1939981168AG0.00446TIMM50+TRUEAluJrSINE,Alu
chr194428790AT0.00000CHAF1A+FALSE
chr1220231484TC0.00046RNU5F-1,BPNT1+,-FALSEAluYSINE,Alu
chr124288535AT0.00271PNRC2+FALSE
chr1100316589AG0.00147AGL+FALSE
chr133149373AG0.00918SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr121545088TC0.00737ECE1-FALSEAluSx1SINE,Alu
chr19161245TC0.00429.FALSEAluSxSINE,Alu
chr830643547TA0.00748PPP2CB-FALSE
chr2114220055TC9.23000E-05CBWD2+FALSE
chr531553968TC0.00555C5orf22+FALSE
chr238522643GT0.00285ATL2-FALSE
chr119542693TC0.00024LOC101927895,EMC1+,-FALSEFRAMSINE,Alu
chr1230416414TG0.00360GALNT2+FALSE
chr3100084432GA0.00321TOMM70-FALSE
chr642045563AG4.21139E-05TAF8+TRUEAluSzSINE,Alu
chr11337733AC0.00017MRPL20-FALSE
chr237330435TC3.14905E-06.FALSEAluSq2SINE,Alu
chr128824360AG0.00971PHACTR4+TRUEAluSx3SINE,Alu
chr2101893244CA0.00332RNF149-FALSE(A)nSINE,Alu
chr417629934TC0.00178.FALSEMER90SINE,Alu
chr1145282799GA0.00915NBPF20,NOTCH2NL+FALSE
chr110517567TC9.16527E-06.FALSEAluSx1SINE,Alu
chr126887592TC0.00354RPS6KA1+FALSE
chr9128729384GC0.00059PBX3+FALSE
chr2172178540TC0.00040METTL8-TRUEAluSx3SINE,Alu
chr340578933AG0.00947ZNF621+TRUEAluJrSINE,Alu
chr247703548GA5.05442E-05MSH2+FALSE
chr194335333GT0.00258DNTTIP2-FALSE
chr270316299CA0.00650PCBP1+FALSE
chr152520864AT0.00041TXNDC12-FALSE
chr1145513098AG0.00514NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr310192744AG3.36147E-05VHL+TRUEAluSx1SINE,Alu
chr1204524400AG0.00029MDM4+TRUEAluYSINE,Alu
chr177165735AG0.00227.FALSE
chr340353799GT0.00906EIF1B+FALSE
chr178378932AG0.00372MYH10-FALSE
chr12125512494AG0.00427.FALSEAluYSINE,Alu
chr19643873AG0.00064.FALSEAluYSINE,Alu
chr314986399TC1.19850E-05FGD5-AS1-TRUEAluSq2SINE,Alu
chr133150598TC4.12722E-05SYNC,RBBP4+,-FALSE
chr642856954AG0.00037RPL7L1+TRUEAluSpSINE,Alu
chr1203713133GA0.00984ATP2B4+FALSE
chr1145116149TA0.00585NBPF20,SEC22B+FALSE
chr736447345AT0.00553ANLN+FALSE
chr120224152GA0.00581OTUD3+FALSE
chr1540955103AG0.00372.FALSEAluJbSINE,Alu
chr457327092AG0.00091PAICS+TRUEAluSx1SINE,Alu
chr128836975AG0.00782SNHG3,RCC1+TRUEAluScSINE,Alu
chr1071647223AC0.00114COL13A1+FALSE
chr11650832AG0.00407CDK11B,CDK11A-FALSE
chr1244572645TG0.00218ADSS-FALSE
chr1420923558AC0.00373APEX1+FALSE
chr237327670TC5.08697E-08.FALSE
chr138279666CT0.00521MTF1-FALSE(T)nSINE,Alu
chr74810530GA0.00236FOXK1+FALSE(GT)nSINE,Alu
chr1194863483CT0.00501ENDOD1+FALSE
chr23609064GA0.00212RNASEH1-AS1+FALSEMER33SINE,Alu
chr126856462TG0.00201RPS6KA1+FALSE
chr388104072TA0.00815CGGBP1-FALSE
chr116945409TA0.00105CROCCP2-FALSE
chr399515750AG2.61553E-11MIR548G-FALSE
chr116912099GC0.00928NBPF1-FALSE
chr116933650AG0.00258NBPF1-FALSEGA-richSINE,Alu
chr16259658GC0.00012RPL22-FALSE
chr1145512014AG0.00023NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr1150199123GT0.00625ANP32E-FALSE
chr237431521AG0.00783CEBPZOS,CEBPZ+,-FALSEAluScSINE,Alu
chr128661767AG0.00242MED18+TRUEAluSgSINE,Alu
chr286850798AG0.00267RNF103-CHMP3,RNF103-FALSE
chr1118502757GA0.00793WDR3,SPAG17+,-FALSE(GT)nSINE,Alu
chr16282237TC0.00771ICMT-TRUEAluSzSINE,Alu
chr116112795AG0.00106FBLIM1+FALSE
chr194342564CA0.00098DNTTIP2-FALSE
chr16582701TC1.54245E-05NOL9-TRUEAluSgSINE,Alu
chr197543764CT0.00353DPYD-FALSE
chr3196670082AT0.00261NCBP2-AS2+FALSE
chr111982544TC4.37710E-05KIAA2013-FALSE
chr1207942427AG0.00822CD46+TRUEAluSg4SINE,Alu
chr237331025TC0.00029.FALSEAluSx1SINE,Alu
chr1224573601CT0.00587WDR26-FALSE
chr2217366194CA0.00359.FALSE
chr317202334AC0.00770TBC1D5-FALSE
chr110519947TC0.00534.FALSEAluJrSINE,Alu
chr561683960AG0.00491.FALSE
chr388191456CA0.00694CGGBP1,ZNF654+,-FALSE
chr1145689611CA0.00104NBPF20,NBPF10+FALSEAluSgSINE,Alu
chr1470838324TC0.00011SYNJ2BP-COX16,SYNJ2BP-TRUEAluSgSINE,Alu
chr152253793CT0.00966OSBPL9+FALSE
chr3196557357GT0.00615PAK2+FALSE
chr116889004CT0.00878NBPF1-FALSE
chr1193054485TC0.00439TROVE2+FALSE
chr189518120AG0.00453GBP1-FALSE
chr267630980GA0.00225ETAA1+FALSE
chr8146280802CT0.00492C8orf33+FALSELTR13SINE,Alu
chr4160280309GT0.00770RAPGEF2+FALSE(T)nSINE,Alu
chr16282298TC2.81673E-05ICMT-TRUEAluSzSINE,Alu
chr720177519TC0.00885MACC1,LOC101927668-TRUEAluSxSINE,Alu
chr2201842323TC0.00390FAM126B-TRUEAluJbSINE,Alu
chr176227022AG0.00035ACADM+FALSE
chr830536143TC0.00883GSR-TRUEAluJrSINE,Alu
chr121793735CG0.00405NBPF3+FALSE
chr310192747AG0.00065VHL+TRUEAluSx1SINE,Alu
chr540835311AT0.00632RPL37-FALSE
chr514397238TC0.00552TRIO+FALSE
chr140435513CA0.00656MFSD2A+FALSE
chr372426071TA0.00169RYBP-FALSE(T)nSINE,Alu
chr12133298428AG7.41792E-11PGAM5+TRUEAluSpSINE,Alu
chr1144930940TC0.00181NBPF20,PDE4DIP+,-FALSE
chr1776117147GA0.00606TMC6-FALSE
chr2203430456TG0.00162BMPR2+FALSE
chr1079800443AG0.00971RPS24+FALSE
chr1144917841TC4.47769E-05NBPF20,PDE4DIP+,-FALSE
chr116892918TC0.00590NBPF1-FALSE
chr1237064432CG0.00019MTR+FALSE
chr110521238TC0.00793DFFA-TRUEAluYSINE,Alu
chr1245008386GC0.00041.FALSEMER2SINE,Alu
chr124296874GA0.00627.FALSEAluSgSINE,Alu
chr19328120AG1.75282E-05H6PD+TRUEAluJrSINE,Alu
chr1120163248GA4.97770E-06ZNF697-FALSE
chr5442075CA0.00962EXOC3-AS1-FALSE
chr1206579798TC0.00476SRGAP2+FALSE
chr439550564TC0.00996UGDH-AS1,SMIM14+,-FALSEAluSx1SINE,Alu
chr1249075983CG0.00321KANSL2-FALSE
chr255516940AC0.00389CCDC88A-FALSE(GA)nSINE,Alu
chr145280500AG0.00857.FALSEAluSxSINE,Alu
chr2110842200CA0.00131MALL-FALSE
chr6108364582TC0.00577OSTM1-FALSE
chr146828700AG0.00095NSUN4+FALSE
chr6160526548CA0.00086IGF2R+FALSE
chr2239360542CA0.00989ASB1+FALSE
chr652868087TC0.00594ICK-TRUEMER135SINE,Alu
chr1761502463TG0.00370TANC2+FALSE
chr167874854TC0.00358SERBP1-TRUEAluSxSINE,Alu
chr168624878CT0.00465GNG12-AS1,WLS+,-FALSE
chr399463810GT0.00496MIR548G,COL8A1+,-FALSE
chr779848333TG0.00322GNAI1+FALSE
chr7100031498TC0.00110MEPCE+FALSE
chr138326547CT0.00212INPP5B-FALSEAluJrSINE,Alu
chr1211921702TC1.94235E-05LPGAT1-FALSE
chr1293192784CT0.00423EEA1-FALSE
chr9116139063GC0.00321HDHD3-FALSE
chr110517513TC0.00982.FALSEAluSx1SINE,Alu
chr12333763GA0.00867RER1+FALSE
chr1475202512AG0.00053FCF1+TRUEAluScSINE,Alu
chr344791320TC0.00059KIAA1143-TRUEAluJrSINE,Alu
chr2201774341TC0.00010.FALSEAluSzSINE,Alu
chr116927379TA0.00864NBPF1-FALSE
chr631132911CT0.00000.FALSE
chr318427924GT0.00312SATB1-FALSE
chr1742876398TC0.00697GJC1-FALSEAluSz6SINE,Alu
chr5149363218AG0.00233SLC26A2+TRUEAluJrSINE,Alu
chr116889820CT0.00012NBPF1-FALSE
chr1290914CT0.00539LOC100288778+FALSE
chr1757279234AG0.00293PRR11+TRUEAluSq2SINE,Alu
chr237331134TC0.00042.FALSEAluSx1SINE,Alu
chr76501820AT0.00531KDELR2-FALSE
chr1214524044TC0.00242PTPN14-TRUEAluSxSINE,Alu
chr136067925TC0.00397PSMB2-TRUEAluSzSINE,Alu
chr1201846630CA0.00212IPO9+FALSE(CA)nSINE,Alu
chr3172365720CT3.67728E-06NCEH1-FALSE
chr136388202TG0.00707AGO1+FALSE(GCCT)nSINE,Alu
chr1544751350CT0.00260CTDSPL2+FALSE
chr1120163248GA0.00711ZNF697-FALSE
chr1109817245CT2.70011E-05CELSR2+FALSE
chr1168522907TC0.00828CPT1A-TRUEAluYSINE,Alu
chr4187647832CG0.00592.FALSE
chr1120611964GC0.00077NOTCH2-FALSE
chr2183643241CA0.00108DNAJC10+FALSE
chr722984967AG0.00108FAM126A-FALSE
chr19163290TC0.00016.FALSEAluSpSINE,Alu
chr141088377CT8.47840E-10RIMS3-FALSE
chr310192596AG7.92003E-05VHL+TRUEAluSx1SINE,Alu
chr1543767774GC0.00057TP53BP1-FALSE
chr154692358GA0.00195SSBP3-FALSE
chr49909923GA0.00416SLC2A9-FALSE
chr119543456TC3.77297E-05LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr1946214293CT0.00137FBXO46-FALSE
chr2206981796TC0.00137.FALSEAluJbSINE,Alu
chr1470838268TC0.00365SYNJ2BP-COX16,SYNJ2BP-TRUEAluSgSINE,Alu
chr131837516GC5.10721E-05ZCCHC17+FALSE
chr453732381CT0.00433RASL11B+FALSE(TTTCTTT)nSINE,Alu
chr1203766872GA1.42518E-06ZC3H11A,ZBED6+FALSE
chr1470838264TC0.00059SYNJ2BP-COX16,SYNJ2BP-TRUEAluSgSINE,Alu
chr5122165512CA0.00276SNX2+FALSE
chr2137789499AG0.00889.FALSEAluJbSINE,Alu
chr358112440AG8.00661E-07FLNB+FALSE
chr1533064742CG0.00215FMN1-FALSE
chr1148932848AG0.00715LOC645166+FALSE
chr324019987AC0.00563NR1D2+FALSE
chr1150208462AC9.89925E-05ANP32E-FALSE
chr1467852067AG2.77652E-05EIF2S1+TRUEAluJbSINE,Alu
chr1100731820GA0.00771RTCA+FALSE
chr1109818160TG0.00745CELSR2+FALSE
chr1145281543CT0.00031NBPF20,NOTCH2NL+FALSE
chr11594977TC0.00487CDK11B,SLC35E2B-TRUEAluSgSINE,Alu
chr124798068CA0.00381NIPAL3+FALSEAluJrSINE,Alu
chr1145689566AG0.00331NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr1143399338GA0.00966.FALSEL1MC4SINE,Alu
chr111190646GA0.00644MTOR-FALSE
chr154412181TC0.00524LRRC42+FALSE
chr142693597AG0.00106FOXJ3-FALSE
chr3172115476AG0.00892FNDC3B+FALSE(A)nSINE,Alu
chr116927039CT0.00040NBPF1-FALSE
chr255459820CT0.00714RPS27A+FALSE
chr167874689TC0.00896SERBP1-TRUEAluSx3SINE,Alu
chr1531231255AG0.00027FAN1,MTMR10+,-FALSE
chr127202812TC0.00353.FALSEAluSq2SINE,Alu
chr1918477337AG0.00085PGPEP1+TRUEAluSx1SINE,Alu
chr1144595935GA0.00837NBPF20+FALSEAluJbSINE,Alu
chr1100490067AG0.00267SLC35A3+TRUEAluSgSINE,Alu
chr12133298355AG0.00024PGAM5+TRUEAluSpSINE,Alu
chr1179829425TC1.55944E-05TOR1AIP2-TRUEAluJrSINE,Alu
chr345960578GA0.00632FYCO1-FALSE
chr126138325GA0.00245SEPN1+FALSE
chr1610623558TC0.00103EMP2-TRUEAluSpSINE,Alu
chr3155660833AG0.00020.FALSEAluSzSINE,Alu
chr11125525572AC0.00016CHEK1+FALSE
chr1118071289AG0.00023.FALSE
chr13654747CA0.00691TP73-AS1-FALSE
chr812283473CT0.00582FAM86B2-FALSE

Differential Expression Gene Analysis