RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	19542463	T	C	0.00060	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	39137793	C	T	0.00363	WDR48	+	FALSE
chr1	31351513	G	A	0.00265	SDC3	-	FALSE
chr1	36067677	T	C	0.00462	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	6948076	C	T	0.00221	CAMTA1	+	FALSE	L2a	SINE,Alu
chr2	24223142	A	G	0.00524	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr1	109605648	A	G	0.00033		.	FALSE	AluY	SINE,Alu
chr2	68402796	C	T	0.00656	PNO1	+	FALSE
chr5	96366330	G	C	0.00251		.	FALSE	(TG)n	SINE,Alu
chr1	121133733	G	A	0.00467	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr6	109785909	T	C	0.00556	MICAL1,ZBTB24	-	TRUE	AluJr	SINE,Alu
chr19	18477761	A	G	0.00461	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr1	45452227	G	C	0.00279	EIF2B3	-	FALSE
chr7	100860467	C	G	0.00267	PLOD3	-	FALSE
chr1	16203171	C	T	3.13656E-06	SPEN	+	FALSE
chr1	33148196	A	G	0.00756	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	28826114	A	G	0.00264	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	36067817	T	C	0.00120	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	143135057	G	A	0.00403	LOC102723769	-	FALSE
chr12	49745425	A	G	0.00489	DNAJC22	+	TRUE	AluSx3	SINE,Alu
chr1	145369550	A	G	0.00031	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr2	174090636	T	A	0.00043	ZAK,MLK7-AS1	+,-	FALSE
chr1	206566048	G	C	0.00125	SRGAP2	+	FALSE
chr1	160967833	T	C	0.00717	F11R	-	TRUE	AluSp	SINE,Alu
chr2	239972080	T	A	0.00136	HDAC4	-	FALSE
chr2	230876757	G	C	0.00321	FBXO36	+	FALSE
chr1	150704483	T	C	0.00028	CTSS	-	TRUE	AluJo	SINE,Alu
chr2	28635740	T	C	0.00358	FOSL2	+	FALSE
chr1	26449882	A	G	0.00783	PDIK1L	+	FALSE
chr20	25427885	A	G	0.00455	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	10517527	T	C	0.00430		.	FALSE	AluSx1	SINE,Alu
chr3	170113815	G	T	0.00586	SKIL	+	FALSE
chr15	41573612	C	A	0.00355	CHP1	+	FALSE
chr1	36067749	T	C	0.00735	PSMB2	-	TRUE	AluSz	SINE,Alu
chr10	70502288	G	A	0.00347	CCAR1	+	FALSE
chr5	125962086	A	G	0.00231	PHAX	+	TRUE	AluSz	SINE,Alu
chr3	40577752	A	G	0.00111	ZNF621	+	TRUE	AluSz	SINE,Alu
chr1	168220535	A	G	0.00665		.	FALSE	AluSz6	SINE,Alu
chr17	49042386	T	C	4.28426E-05	SPAG9	-	TRUE	AluJb	SINE,Alu
chr2	10923581	C	T	0.00593	ATP6V1C2,PDIA6	+,-	FALSE
chr1	6282361	T	C	0.00634	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	161488401	T	A	0.00622	FCGR2A	+	FALSE
chr4	177241194	C	T	6.44832E-08	SPCS3	+	FALSE
chr22	18571477	A	G	4.57932E-05	PEX26	+	TRUE	AluSz	SINE,Alu
chr7	20178490	T	C	0.00028	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chr12	120898697	A	G	0.00488	GATC	+	TRUE	AluY	SINE,Alu
chr1	33149399	A	G	0.00308	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr3	48632596	A	G	0.00666		.	FALSE
chr1	59121036	A	C	0.00467	MYSM1	-	FALSE
chr1	246831356	G	A	0.00616	CNST	+	FALSE
chr15	52203664	A	C	0.01000	TMOD3	+	FALSE
chr3	75475670	A	C	0.00506	FAM86DP	-	FALSE
chr1	54691922	T	A	0.00067	SSBP3	-	FALSE
chr3	44791536	T	C	4.11776E-05	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr1	77557891	T	C	0.00557	PIGK	-	FALSE
chr9	137330711	T	A	0.00194	RXRA	+	FALSE	(GCTG)n	SINE,Alu
chr1	10521237	T	C	0.00200	DFFA	-	TRUE	AluY	SINE,Alu
chr2	74333235	C	T	0.00022	TET3	+	FALSE
chr2	170497651	C	T	0.00195		.	FALSE
chr1	1650845	G	A	0.00094	CDK11B,CDK11A	-	FALSE
chr1	87170493	T	G	0.00345	SH3GLB1	+	FALSE
chr1	8412652	A	C	0.00929	RERE	-	FALSE
chr10	51613231	T	C	2.61914E-05	TIMM23B,TIMM23	+,-	FALSE
chr1	117532372	G	T	0.00678	PTGFRN	+	FALSE
chr7	75163757	T	C	0.00448	HIP1	-	FALSE	AluSx1	SINE,Alu
chr5	79923430	T	C	0.00817	DHFR	-	TRUE	AluJr	SINE,Alu
chr3	195435168	T	G	0.00111	LINC00969	+	FALSE
chr2	37330507	T	C	9.86666E-05		.	FALSE	AluSq2	SINE,Alu
chr3	181430141	G	C	0.00086	SOX2-OT,SOX2	+	FALSE
chr1	2161135	A	G	0.00028	SKI	+	FALSE
chr3	122283289	C	A	0.00072	DTX3L,PARP9	+,-	FALSE
chr1	144931392	G	A	0.00172	NBPF20,PDE4DIP	+,-	FALSE
chr6	42856131	A	G	0.00062	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr6	109001947	A	G	0.00359	FOXO3	+	FALSE	(A)n	SINE,Alu
chr1	117618067	C	T	0.00118	TTF2	+	FALSE
chr6	31110789	T	C	0.00798		.	FALSE
chr17	66264542	A	T	0.00110	ARSG,SLC16A6	+,-	FALSE
chr4	184238324	G	A	0.00870	WWC2	+	FALSE
chr6	31236900	G	A	0.00167		.	FALSE
chr1	220231963	T	C	0.00343	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr3	5026731	C	T	0.00824	BHLHE40	+	FALSE
chr1	326499	A	G	0.00583		.	FALSE
chr2	174090332	A	C	0.00918	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr1	1594197	C	T	0.00097	CDK11B,SLC35E2B	-	FALSE
chr9	115447532	T	C	9.24886E-06	INIP	-	TRUE	AluJb	SINE,Alu
chr1	46075724	A	G	0.00990	NASP	+	TRUE	AluSx4	SINE,Alu
chr9	136209398	G	A	0.00150	MED22	-	FALSE
chr4	169911112	C	A	0.00142	CBR4	-	FALSE
chr4	57326875	A	G	1.03861E-05	PAICS	+	TRUE	AluSx1	SINE,Alu
chr3	73115390	C	T	0.00462	PPP4R2	+	FALSE	(AT)n	SINE,Alu
chr1	25688276	A	G	0.00015	TMEM50A	+	FALSE
chr17	57279323	A	G	0.00159	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	29519595	T	C	0.00208	MECR	-	TRUE	AluJb	SINE,Alu
chr1	10521170	T	C	0.00498	DFFA	-	TRUE	AluY	SINE,Alu
chr1	33145989	A	T	0.00548	SYNC,RBBP4	+,-	FALSE
chr6	27327349	C	G	0.00359	ZNF204P	-	FALSE
chr17	5288079	A	C	0.00085	RABEP1	+	FALSE
chr14	53242859	T	C	9.31997E-05	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr1	6585331	T	C	0.00779	NOL9	-	TRUE	FAM	SINE,Alu
chr7	75677504	C	T	0.00768	MDH2	+	FALSE
chr3	156258283	T	C	0.00071	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	2121118	C	T	0.00234	FAAP20	-	FALSE
chr1	16889566	T	C	0.00305	NBPF1	-	TRUE
chr1	46076468	A	G	3.83065E-05	NASP	+	TRUE	AluSx	SINE,Alu
chr1	36068295	T	C	0.00057	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	145513016	A	G	0.00069	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	1152601	A	G	0.00075	SDF4	-	FALSE
chr4	1006333	G	A	0.00117	FGFRL1	+	FALSE	(CTG)n	SINE,Alu
chr17	38512480	C	T	0.00725	RARA	+	FALSE
chr1	204521159	A	G	0.00158	MDM4	+	TRUE	AluSp	SINE,Alu
chr1	38326728	T	C	0.00399	INPP5B	-	TRUE	AluJr	SINE,Alu
chr12	133298937	A	G	0.00240	PGAM5	+	TRUE	AluSg	SINE,Alu
chr6	153314040	G	A	0.00041	MTRF1L	-	FALSE
chr3	73115786	T	C	3.88619E-05	PPP4R2	+	FALSE
chr1	220231263	T	C	0.00116	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	1650801	T	C	0.00761	CDK11B,CDK11A	-	FALSE
chr1	144594308	G	A	0.00577	NBPF20	+	FALSE
chr1	16921146	T	C	0.00382	NBPF1	-	FALSE
chr1	204521625	A	G	0.00808	MDM4	+	TRUE	AluSg	SINE,Alu
chr12	48539888	C	A	0.00088	PFKM	+	FALSE
chr4	1305799	C	T	0.00271	MAEA	+	FALSE
chr1	16893691	C	A	0.00170	NBPF1	-	FALSE
chr1	145689812	A	G	0.00431	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr1	1595074	T	C	0.00296	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr5	44826677	G	T	0.00941		.	FALSE	(T)n	SINE,Alu
chr2	20818286	A	C	0.00714	HS1BP3	-	FALSE
chr1	28661653	A	G	9.75782E-05	MED18	+	TRUE	AluSg	SINE,Alu
chr5	151041884	T	A	0.00101	SPARC	-	FALSE
chr5	52389817	T	A	0.00868	ITGA2	+	FALSE
chr2	188330198	C	A	0.00091	TFPI	-	FALSE	AluJb	SINE,Alu
chr1	19543353	T	C	0.00101	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr3	52237970	C	T	0.00017	ALAS1	+	FALSE
chr12	69237042	A	G	0.00413	MDM2	+	TRUE
chr7	128142395	A	C	0.00300	METTL2B	+	FALSE
chr1	10519946	T	C	0.00401		.	FALSE	AluJr	SINE,Alu
chr1	53289686	A	G	0.00460	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr3	58306666	A	G	0.00139		.	FALSE	AluSz	SINE,Alu
chr1	1656557	T	C	0.00061	SLC35E2	-	TRUE	AluSz	SINE,Alu
chr1	110207639	T	A	0.00080	GSTM4	+	FALSE
chr5	175934037	C	A	0.00182	FAF2	+	FALSE	A-rich	SINE,Alu
chr2	65496144	A	G	0.00883	ACTR2	+	FALSE
chr2	191829133	G	A	0.00097	GLS	+	FALSE
chr1	145511988	A	G	0.00900	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr19	16661483	T	C	0.00824	SLC35E1	-	TRUE	AluSz	SINE,Alu
chr1	35817023	G	C	0.00547	ZMYM4	+	FALSE
chr6	74133913	T	C	0.00439		.	FALSE	AluY	SINE,Alu
chr5	149363273	A	G	0.00587	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr2	216225584	G	T	0.00848	FN1	-	FALSE
chr1	55541174	A	G	0.00038	USP24	-	FALSE
chr17	42113064	A	G	0.00014	LSM12	-	FALSE	(A)n	SINE,Alu
chr14	75202412	A	G	5.03546E-10	FCF1	+	TRUE	AluSc	SINE,Alu
chr11	19245854	T	C	0.00078	E2F8	-	FALSE
chr2	99772813	A	G	1.48642E-06	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr1	16890176	A	C	0.00753	NBPF1	-	FALSE
chr15	74319092	A	G	0.00029	PML	+	TRUE	AluSz6	SINE,Alu
chr2	128952075	A	G	0.00919	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr1	10221287	A	G	0.00961	UBE4B	+	FALSE
chr2	26477130	T	C	0.00501	HADHB	+	FALSE
chr1	16945570	A	G	0.00131	CROCCP2	-	FALSE
chr17	42876808	T	C	0.00147	GJC1	-	TRUE	AluSz6	SINE,Alu
chr1	228881190	T	G	0.00043	RHOU	+	FALSE
chr15	66791657	G	T	0.00422	RPL4	-	FALSE
chr1	20826083	G	A	0.00289	MUL1	-	FALSE
chr3	196466874	G	T	0.00226	PAK2	+	FALSE
chr5	65120054	C	T	0.00625	NLN	+	FALSE
chr1	38423199	A	T	0.00192	SF3A3	-	FALSE	AluJo	SINE,Alu
chr1	9160982	T	C	0.00350		.	FALSE	AluJb	SINE,Alu
chr1	9331255	A	G	0.00992	H6PD	+	TRUE	AluSx	SINE,Alu
chr3	40353799	G	T	0.00906	EIF1B	+	FALSE
chr1	79115905	T	C	0.00113	IFI44	+	FALSE
chr1	172411768	T	C	0.00416	C1orf105,PIGC	+,-	FALSE
chr1	28865500	T	A	0.00509	RCC1	+	FALSE
chr12	96661613	A	G	0.00183	ELK3	+	FALSE
chr3	22424405	T	A	0.00766		.	FALSE
chr2	99812429	A	G	0.00504	MRPL30	+	TRUE	AluSx	SINE,Alu
chr5	32601672	A	T	0.00563	SUB1	+	FALSE
chr1	1595603	C	G	0.00017	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr9	19376252	A	T	0.00367		.	FALSE
chr6	99319240	T	A	0.00842		.	FALSE	Cheshire	SINE,Alu
chr2	61278030	A	G	0.00218	PEX13	+	TRUE	AluY	SINE,Alu
chr14	65400786	T	G	0.00077	CHURC1-FNTB,CHURC1	+	FALSE	AluSx	SINE,Alu
chr5	37290435	T	C	8.22232E-07		.	FALSE	AluSz	SINE,Alu
chr6	74303531	T	C	0.00487	SLC17A5	-	TRUE	AluJr	SINE,Alu
chr12	125269489	C	T	0.00817	SCARB1	-	FALSE
chr1	145442111	C	A	0.00090	NBPF20,NBPF10,TXNIP	+	FALSE
chr1	11084103	T	A	0.00118	TARDBP	+	FALSE
chr5	180663940	A	G	0.00331	RACK1	-	FALSE
chr1	144521099	A	G	0.00196	NBPF20	+	FALSE
chr2	170607000	T	A	0.00590	PHOSPHO2-KLHL23,KLHL23	+	FALSE
chr6	160211652	C	G	0.00719	MRPL18	+	FALSE
chr1	16944809	G	C	9.47535E-05	CROCCP2	-	FALSE
chr1	53289686	A	G	0.00265	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr3	191114309	A	T	1.88175E-05	CCDC50	+	FALSE
chr6	74303543	T	C	0.00031	SLC17A5	-	TRUE	AluJr	SINE,Alu
chr1	117530188	A	G	0.00199	PTGFRN	+	FALSE
chr1	160967817	T	C	0.00478	F11R	-	TRUE	AluSp	SINE,Alu
chr1	19543352	T	C	0.00086	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	29023124	G	T	0.00477	PPP1CB	+	FALSE
chr19	16661541	T	C	0.00120	SLC35E1	-	TRUE	AluSz	SINE,Alu
chr8	12283473	C	T	0.00582	FAM86B2	-	FALSE
chr6	42061234	T	C	0.00170		.	FALSE	AluSx1	SINE,Alu
chr3	93846961	A	G	0.00454		.	FALSE	AluSq2	SINE,Alu
chr16	10623705	T	C	0.00011	EMP2	-	TRUE	AluSp	SINE,Alu
chr8	41401497	A	G	0.00051	LOC102723729,GINS4	+,-	FALSE	AluSq2	SINE,Alu
chr1	204526710	A	G	0.00082	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	33277080	C	T	8.00797E-06	YARS	-	FALSE	LTR6A	SINE,Alu
chr1	92862804	A	G	0.00043		.	FALSE	AluJr	SINE,Alu
chr1	155217438	A	T	0.00610	FAM189B	-	FALSE
chr2	85621889	C	T	0.00366	CAPG	-	FALSE
chr1	28800380	C	A	0.00186	PHACTR4	+	FALSE
chr1	16112795	A	G	0.00145	FBLIM1	+	FALSE
chr2	206983255	T	C	0.00246		.	FALSE	AluJb	SINE,Alu
chr1	148928344	A	G	0.00608	LOC645166	+	FALSE	TAR1	SINE,Alu
chr2	44459528	G	A	0.00100	PPM1B	+	FALSE
chr1	158067060	T	A	0.00114	KIRREL	+	FALSE
chr1	20945264	A	C	0.00605	CDA	+	FALSE
chr6	3022725	T	C	0.00081	HTATSF1P2	-	TRUE	AluSz	SINE,Alu
chr3	50150360	A	G	0.00827	RBM5	+	TRUE	AluSx	SINE,Alu
chr1	28661692	A	G	0.00219	MED18	+	TRUE	AluSg	SINE,Alu
chr3	197682718	T	C	0.00163	IQCG,RPL35A	+,-	FALSE
chrX	77083846	T	C	0.00668	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	179042687	A	G	0.00163	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr2	217366919	A	G	0.00709		.	FALSE	AluSz6	SINE,Alu
chr2	219100706	A	G	0.00874	ARPC2	+	TRUE	AluSx1	SINE,Alu
chr2	1637531	A	G	0.00664	PXDN	-	FALSE
chr1	28826150	A	G	0.00047	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr3	23958355	C	T	0.00997	NKIRAS1,RPL15	+,-	FALSE
chr1	10521126	T	C	0.00560	DFFA	-	TRUE	AluY	SINE,Alu
chr3	172115590	A	G	0.00355	FNDC3B	+	FALSE
chr3	49571462	G	T	0.00032	DAG1	+	FALSE
chr1	145688664	A	T	0.00087	NBPF20,NBPF10,RNF115	+	FALSE
chrX	118672561	T	C	2.49155E-08	CXorf56	-	TRUE	AluSx	SINE,Alu
chr12	62928633	G	A	0.00307	MON2	+	FALSE
chr6	111588769	A	G	2.24603E-05	MFSD4B	+	TRUE	AluYm1	SINE,Alu
chr1	28662186	A	G	8.22643E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	28661656	A	G	0.00031	MED18	+	TRUE	AluSg	SINE,Alu
chr1	46075604	A	G	0.00155	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	6283264	T	C	0.00095	ICMT	-	TRUE	AluSx3	SINE,Alu
chr2	75888160	A	C	0.00599	MRPL19	+	FALSE	L1MB4	SINE,Alu
chr4	17802783	T	C	6.83941E-07	DCAF16	-	TRUE	AluSz	SINE,Alu
chr19	58375707	A	G	0.00156	ZNF587	+	TRUE	AluSg	SINE,Alu
chr5	40828060	T	C	0.00253	LOC100506548	-	FALSE
chr1	145511796	T	G	0.00173	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	(T)n	SINE,Alu
chr1	788795	T	G	0.00333	LINC01128	+	FALSE	Charlie19a	SINE,Alu
chr1	27678712	A	G	0.00215	SYTL1	+	TRUE	AluSx1	SINE,Alu
chr1	148556743	G	A	0.00402		.	FALSE
chr1	28835934	A	G	0.00069	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr19	16663345	T	C	0.00304	SLC35E1	-	TRUE	AluSg	SINE,Alu
chrX	123046757	A	G	0.00535	XIAP	+	TRUE	AluSz	SINE,Alu
chr1	100676277	A	G	0.00135	DBT	-	FALSE
chr1	788844	C	G	0.00406	LINC01128	+	FALSE
chr1	36534736	A	G	0.00016		.	FALSE	AluJo	SINE,Alu
chr1	16889864	C	A	0.00094	NBPF1	-	FALSE
chr1	161160460	T	A	0.00298	ADAMTS4	-	FALSE	(CA)n	SINE,Alu
chr2	217366901	A	G	0.00143		.	FALSE	AluSz6	SINE,Alu
chr1	10521238	T	C	0.00232	DFFA	-	TRUE	AluY	SINE,Alu
chr5	125961447	A	G	0.00563	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	160967938	T	C	0.00874	F11R	-	TRUE	AluSp	SINE,Alu
chr3	195963395	A	G	0.00028		.	FALSE
chr3	150262002	G	T	0.00016	SERP1	-	FALSE
chr3	196077460	G	T	0.00416		.	FALSE
chr2	86251114	T	C	0.00709		.	FALSE	AluSx	SINE,Alu
chr1	36770621	G	T	0.00424	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	50906945	C	T	0.00178	FAF1	-	FALSE
chr1	21545089	C	T	0.00010	ECE1	-	FALSE	AluSx1	SINE,Alu

RBP	RBFOX2
Knock-Method	shRNA
RBP Family	Fox-1_C
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR336DFS
Platform	HiSeq
Pubmed ID	32252787

RBFOX2 - Target Gene Network