RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr4	56294628	T	C	0.00234	CLOCK	-	FALSE
chr1	58999651	T	G	0.00484	OMA1	-	FALSE
chr1	142688506	T	C	0.00337		.	FALSE
chr3	45722047	A	G	0.00085	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	70904800	G	T	0.00772	CTH	+	FALSE
chr1	36067925	T	C	1.81623E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	173793106	C	T	0.00772	CENPL	-	FALSE
chr1	109746728	A	G	0.00171	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	114939633	G	A	0.00188	TRIM33	-	FALSE
chr19	13883548	A	G	0.00566	MRI1	+	TRUE	AluYk3	SINE,Alu
chr2	24225006	A	G	0.00078		.	FALSE	AluSx	SINE,Alu
chr1	46164678	T	C	0.00773	IPP	-	TRUE	AluJb	SINE,Alu
chr3	30047174	A	T	0.00556	RBMS3	+	FALSE
chr1	201860626	A	G	0.00599	SHISA4	+	FALSE
chr3	14526649	T	G	0.00260	SLC6A6	+	FALSE
chr1	210029539	G	A	0.00231	DIEXF	+	FALSE
chr1	205683408	C	T	0.00082	NUCKS1	-	FALSE
chr4	54244053	G	C	0.00726	FIP1L1	+	FALSE	(CGGAG)n	SINE,Alu
chr1	100676277	A	G	0.00135	DBT	-	FALSE
chr1	22352040	G	T	0.00255	LOC101928043,LINC00339	+,-	FALSE
chr6	53363500	G	T	0.00684	GCLC	-	FALSE
chr2	75120159	C	T	0.00180	HK2	+	FALSE
chr1	92941357	A	G	0.00296	GFI1	-	FALSE
chr1	51434560	G	A	0.00685	CDKN2C	+	FALSE
chr1	13942884	A	C	0.00016	PDPN	+	FALSE
chr2	5837878	G	A	7.66453E-07	SOX11	+	FALSE
chr4	57327092	A	G	0.00091	PAICS	+	TRUE	AluSx1	SINE,Alu
chr7	157129834	C	G	1.26796E-05	DNAJB6	+	FALSE
chr2	101622887	G	A	0.00711	RPL31	+	FALSE
chr2	191555980	T	A	0.00913	NAB1	+	FALSE
chr10	75008797	T	C	0.00824	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chrX	123045405	A	G	0.00551	XIAP	+	TRUE	AluJo	SINE,Alu
chr1	45975628	A	G	0.00465	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	138266	C	T	7.30419E-05	LOC729737	-	FALSE
chr1	246931057	A	G	0.00048	SCCPDH	+	FALSE
chr2	174090631	A	C	0.00038	ZAK,MLK7-AS1	+,-	FALSE
chr6	42856007	A	G	0.00212	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr17	61897188	G	T	0.00465	FTSJ3	-	FALSE
chr4	39550981	T	C	5.85020E-07	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr3	42252924	G	C	0.00079	TRAK1	+	FALSE
chr1	144828688	C	T	0.00024	NBPF20,NBPF9	+	FALSE
chr5	1317949	C	T	0.00173	CLPTM1L	-	FALSE
chr5	172461896	T	A	0.00335	ATP6V0E1	+	FALSE
chr1	85785549	T	C	0.00320	DDAH1	-	FALSE
chr1	78414285	T	A	0.00179	FUBP1	-	FALSE
chrX	123046302	A	G	0.00649	XIAP	+	TRUE	AluJb	SINE,Alu
chr9	132268259	A	G	0.00032	LINC00963	+	TRUE	AluJb	SINE,Alu
chr2	178406763	T	C	0.00452	AGPS	+	FALSE
chr1	161141432	C	G	0.00508	B4GALT3	-	FALSE
chr2	55255314	A	C	0.00638	RTN4	-	FALSE
chr1	38174185	G	T	0.00020	CDCA8	+	FALSE
chr14	74526154	T	C	0.00030	BBOF1,ALDH6A1	+,-	FALSE	AluSp	SINE,Alu
chr1	145826918	G	C	0.00829	NBPF20,NBPF10,GPR89A	+,-	FALSE
chr2	174090636	T	A	0.00043	ZAK,MLK7-AS1	+,-	FALSE
chr19	62927	G	A	0.00358	WASH5P	-	FALSE
chr1	158057633	C	G	0.00031	KIRREL	+	FALSE
chr1	36067817	T	C	1.59583E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	171501831	A	G	0.00040	PRRC2C	+	FALSE
chr1	16945409	T	A	0.00105	CROCCP2	-	FALSE
chr1	93803522	T	C	0.00163	CCDC18-AS1	-	TRUE	AluJr	SINE,Alu
chr2	25044957	G	A	0.00651	CENPO,ADCY3	+,-	FALSE
chr1	78414310	C	A	0.00131	FUBP1	-	FALSE
chr2	114352179	G	A	1.68965E-05	WASH2P	+	FALSE
chr1	59122056	G	C	1.57132E-06	MYSM1	-	FALSE
chr1	900505	G	C	0.00583	KLHL17	+	FALSE
chr3	53265957	T	C	0.00493	TKT	-	FALSE
chr2	217366896	A	G	0.00457		.	FALSE	AluSz6	SINE,Alu
chr12	29493734	C	T	0.00163	ERGIC2	-	FALSE
chr5	68936027	G	A	0.00868		.	FALSE
chr1	45976262	A	C	0.00010	MMACHC	+	FALSE
chr4	1305799	C	T	0.00730	MAEA	+	FALSE
chrX	77083116	T	C	0.00658	MAGT1	-	TRUE	AluSg	SINE,Alu
chr3	179042832	A	G	0.00308	ZNF639	+	TRUE	AluSp	SINE,Alu
chr1	54571374	A	G	0.00916	TCEANC2	+	TRUE	AluSc	SINE,Alu
chr1	16893691	C	A	0.00371	NBPF1	-	FALSE
chr1	200375848	C	T	0.00586	ZNF281	-	FALSE	(T)n	SINE,Alu
chr5	178986978	C	G	0.00341	RUFY1	+	FALSE
chr1	160990876	C	A	1.09997E-06	F11R	-	FALSE
chr1	233518885	T	C	0.00021	MLK4	+	FALSE	(TTTC)n	SINE,Alu
chr1	24746451	A	G	0.00683	NIPAL3	+	TRUE	AluSc	SINE,Alu
chr3	172351006	C	G	6.14326E-06	NCEH1	-	FALSE
chr13	31033316	T	A	0.00497	HMGB1	-	FALSE
chr2	61764922	G	C	0.00679	XPO1	-	FALSE
chr1	145513114	A	G	0.00026	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr3	57613144	T	C	0.00959	DENND6A,PDE12	+,-	FALSE	AluSz	SINE,Alu
chr17	65334856	T	C	1.38810E-06	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	204521590	A	G	1.33621E-05	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	87328403	A	T	0.00235	SEP15	-	FALSE
chr3	142776250	A	C	0.00926	U2SURP	+	FALSE
chr1	149913513	T	C	0.00495	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr1	100654773	T	C	0.00810	DBT	-	TRUE	AluSz	SINE,Alu
chr6	42856105	A	G	0.00972	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr7	56131098	T	A	0.00950	CCT6A	+	FALSE	L1M5	SINE,Alu
chr1	150281090	A	G	3.10555E-05	MRPS21	+	TRUE	AluSz	SINE,Alu
chr1	68940885	G	A	0.00022	DEPDC1	-	FALSE	MIR	SINE,Alu
chr1	46830430	G	A	0.00023	NSUN4	+	FALSE	LTR108a_Mam	SINE,Alu
chr2	43625184	T	A	0.00587	THADA	-	FALSE
chr1	570178	G	A	0.00787		.	FALSE
chr6	11185161	C	T	0.00297	NEDD9	-	FALSE
chr3	15112510	T	C	0.00710	RBSN	-	FALSE	AluSq2	SINE,Alu
chr2	202242616	G	A	0.00880	TRAK2	-	FALSE
chr1	233514975	G	T	0.00584	MLK4	+	FALSE
chr4	25279508	G	A	3.42130E-11	PI4K2B	+	FALSE
chr1	10520383	T	C	0.00401		.	FALSE	AluSx1	SINE,Alu
chr2	61416411	T	G	0.00146	USP34	-	FALSE	AluSc8	SINE,Alu
chr1	40539213	A	G	0.00693	PPT1	-	FALSE
chr11	769883	T	C	0.00631	PDDC1	-	TRUE	AluY	SINE,Alu
chr8	144684474	T	C	0.00058		.	FALSE
chr3	48787042	T	C	0.00799	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	54692341	T	C	0.00045	SSBP3	-	FALSE	(T)n	SINE,Alu
chr15	38643574	T	C	0.00455	SPRED1	+	FALSE
chr1	204525713	A	G	0.00501	MDM4	+	TRUE	AluSz	SINE,Alu
chr4	83351845	G	T	0.00422	ENOPH1	+	FALSE
chr7	115898258	A	T	0.00314	TES	+	FALSE	(T)n	SINE,Alu
chr2	191745647	C	T	2.95764E-05	GLS	+	FALSE
chr9	130268407	C	G	0.00902	FAM129B	-	FALSE	(CTCA)n	SINE,Alu
chr8	144940794	G	C	0.00038	EPPK1	-	FALSE
chr6	160526905	C	A	0.00268	IGF2R	+	FALSE
chr1	223967953	C	T	0.00341	TP53BP2	-	FALSE
chr8	124262076	G	T	0.00115	ZHX1-C8orf76,ZHX1	-	FALSE
chr14	69704553	G	T	7.62587E-05	EXD2	+	FALSE
chr1	67874859	T	C	0.00027	SERBP1	-	TRUE	AluSx	SINE,Alu
chr5	139931626	T	G	0.00490	SRA1	-	FALSE
chr10	101992425	T	C	0.00406	CWF19L1	-	TRUE	AluSq2	SINE,Alu
chr1	113672691	A	G	0.00515		.	FALSE	AluJb	SINE,Alu
chr7	6064009	C	G	0.00273	EIF2AK1	-	FALSE
chr2	206987629	T	C	0.00491		.	FALSE	AluJb	SINE,Alu
chr1	19566382	A	G	0.00513	LOC101927895,EMC1	+,-	FALSE
chr7	128169979	T	G	0.00569		.	FALSE
chr4	2940397	T	C	0.00010	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr5	37290323	T	C	8.21848E-08		.	FALSE	AluSz	SINE,Alu
chr1	114438951	A	G	0.00012	AP4B1-AS1,AP4B1	+,-	FALSE
chr2	32539582	A	G	0.00419		.	FALSE	AluSp	SINE,Alu
chr19	16663345	T	C	0.00304	SLC35E1	-	TRUE	AluSg	SINE,Alu
chr11	31452750	A	G	0.00326	DNAJC24	+	TRUE	AluSx1	SINE,Alu
chr1	138356	C	A	0.00199	LOC729737	-	FALSE
chr1	67874689	T	C	1.54545E-05	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr3	10193511	A	G	0.00116	VHL	+	TRUE	AluJr	SINE,Alu
chr1	36770601	G	T	0.00055	THRAP3	+	FALSE	(T)n	SINE,Alu
chr4	119956116	G	T	0.00442	SYNPO2	+	FALSE
chr1	33148213	A	G	0.00958	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr3	33907915	A	G	3.74419E-09	PDCD6IP	+	FALSE
chr1	10221302	G	A	0.00119	UBE4B	+	FALSE
chr16	80636808	C	T	0.00881	CDYL2	-	FALSE
chr22	50745987	C	G	0.00683	PLXNB2	-	FALSE
chr1	36068370	T	C	0.00067	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	11159823	T	C	0.00186	EXOSC10,LOC105376736	+,-	FALSE
chr1	101444791	C	T	0.00268	SLC30A7	+	FALSE
chr1	148003752	T	C	3.77288E-10	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr17	18111804	T	G	0.00487	ALKBH5	+	FALSE	(TTTTGTT)n	SINE,Alu
chr1	67874689	T	C	0.00053	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	6283264	T	C	0.00284	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	15896199	G	A	0.00483	DNAJC16	+	FALSE	AluSp	SINE,Alu
chr1	10364612	A	C	0.00860	KIF1B	+	FALSE
chr1	31732599	T	G	0.00827	SNRNP40	-	FALSE
chr3	196771049	T	C	0.00010	DLG1	-	FALSE
chr1	113673737	A	G	0.00798		.	FALSE	AluSx1	SINE,Alu
chr1	3545192	C	G	0.00011	TPRG1L	+	FALSE
chr17	263417	C	T	0.00675	LOC105371430,C17orf97	+,-	FALSE
chr4	25279320	G	A	1.66733E-12	PI4K2B	+	FALSE
chr12	44182706	A	G	0.00788	IRAK4	+	FALSE	MSTB-int	SINE,Alu
chr1	9161199	T	C	0.00468		.	FALSE	AluSx	SINE,Alu
chr1	1684346	G	C	0.00504	NADK	-	FALSE
chr2	232319612	A	T	5.77221E-05	NCL	-	FALSE
chr12	12967264	C	G	0.00781	DDX47	+	FALSE
chr17	62541203	G	A	0.00660	SMURF2	-	FALSE
chr2	37076498	A	C	0.00797	STRN	-	FALSE
chr1	1683565	G	A	7.19943E-05	NADK	-	FALSE
chr4	39550967	T	C	2.19217E-06	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr7	11148863	T	A	0.00455	PHF14	+	FALSE
chr1	10517300	T	C	0.00011		.	FALSE	AluJr	SINE,Alu
chr1	33148045	A	G	0.00264	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr3	88199298	T	C	0.00048	C3orf38	+	FALSE
chr6	13788342	T	C	0.00048	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	3545194	C	G	0.00176	TPRG1L	+	FALSE
chr1	67874696	T	C	0.00098	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr5	81571878	A	T	8.61300E-05	RPS23	-	FALSE
chr1	20977380	T	C	0.00429	PINK1,PINK1-AS	+,-	FALSE
chr1	32661594	C	T	0.00725	TXLNA	+	FALSE	(T)n	SINE,Alu
chr16	19715588	T	C	0.00063		.	FALSE	AluSg	SINE,Alu
chr1	42693597	A	G	0.00106	FOXJ3	-	FALSE
chr1	207942509	A	G	0.00177	CD46	+	TRUE	AluSg4	SINE,Alu
chr2	61278030	A	G	0.00218	PEX13	+	TRUE	AluY	SINE,Alu
chr6	31657413	T	C	0.00066		.	FALSE
chr2	86252043	T	C	0.00909	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr17	73703945	C	T	0.00242	SAP30BP	+	FALSE	MIRc	SINE,Alu
chr5	37290554	T	C	0.00010		.	FALSE	AluSz	SINE,Alu
chr1	19542410	T	C	0.00270	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	196728813	C	T	0.00068	MELTF	-	FALSE
chr3	160286646	C	T	0.00086		.	FALSE
chr1	118066724	A	T	0.00979	MAN1A2	+	FALSE
chr4	177252327	A	G	3.52508E-05	SPCS3	+	TRUE
chr1	46828657	C	T	0.00378	NSUN4	+	FALSE
chr17	49041827	T	C	0.00125	SPAG9	-	TRUE	AluSx	SINE,Alu
chr19	18475303	A	G	0.00757	PGPEP1	+	TRUE	AluSx1	SINE,Alu
chr3	15113655	T	C	6.08503E-07	RBSN	-	TRUE	AluSz6	SINE,Alu
chr2	32535747	A	G	0.00250		.	FALSE	AluJb	SINE,Alu
chr3	49315588	T	G	0.00182	USP4	-	FALSE
chr1	154179193	A	T	0.00122	C1orf43	-	FALSE
chr1	20982216	T	A	0.00065	DDOST	-	FALSE
chr7	129251289	C	T	0.00808		.	FALSE
chr5	93018903	T	A	5.97109E-08	FAM172A	-	FALSE	(TCA)n	SINE,Alu
chr2	11323108	T	A	0.00100	ROCK2	-	FALSE	(TA)n	SINE,Alu
chr3	179117241	T	C	0.00133	GNB4	-	TRUE	AluSz	SINE,Alu
chr2	183601110	T	G	0.00824	DNAJC10	+	FALSE
chr15	90820104	A	G	4.84304E-05		.	FALSE	AluY	SINE,Alu
chr1	38326774	T	C	0.00664	INPP5B	-	TRUE	AluJr	SINE,Alu
chr3	16357708	A	G	0.00098	RFTN1	-	FALSE
chr9	131457814	G	A	0.00021	SET	+	FALSE
chr1	16932429	C	G	0.00823	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr3	88199298	T	C	0.00112	C3orf38	+	FALSE
chr7	128829066	A	G	0.00816	SMO	+	FALSE
chr1	10042911	A	G	0.00043	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr7	24731065	C	T	0.00414	MPP6	+	FALSE	(TGTATG)n	SINE,Alu
chr14	74526976	T	C	0.00469	BBOF1,ALDH6A1	+,-	FALSE	AluJo	SINE,Alu
chr7	17384880	A	G	0.00027	AHR	+	TRUE	AluSc	SINE,Alu
chr1	10519910	T	C	7.27344E-07		.	FALSE	AluJr	SINE,Alu
chr3	10192753	A	G	0.00069	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	145689566	A	G	0.00331	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	144594308	G	A	0.00577	NBPF20	+	FALSE
chr1	143399333	T	A	0.00339		.	FALSE	L1MC4	SINE,Alu
chr13	38936619	G	T	0.00212	UFM1	+	FALSE

RBP	LIN28B
Knock-Method	shRNA
RBP Family	CSD
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR598YQX
Platform	HiSeq
Pubmed ID	32252787

LIN28B - Target Gene Network