Dataset Overview
RBPRCC2
Knock-MethodshRNA
RBP FamilyNon-canonical_RBP
Biosample NameHepG2
Tissue TypeLiver
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR685JXU
PlatformHiSeq
Pubmed ID32252787

RCC2 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of RCC2
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of RCC2


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr2222050366TC0.00449PPIL2+FALSEMER5ASINE,Alu
chr363996262CT0.00273PSMD6-AS2,PSMD6+,-FALSE
chr276672504AG2.97414E-06.FALSE7SKSINE,Alu
chr2201774774TC0.00017.FALSEAluJr4SINE,Alu
chr1117648345AG0.00739.FALSE
chr634231288AG0.00143.FALSE
chr1298942644AG0.00133TMPO+TRUEAluScSINE,Alu
chr19642828TA0.00148SLC25A33+FALSE
chr1109240641TA0.00090PRPF38B+FALSE
chr141204569CT0.00854NFYC+FALSE
chr19162348TC0.00824.FALSEAluSxSINE,Alu
chr133149376AG0.00424SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr119586455AG3.44081E-06MRTO4+TRUEAluSzSINE,Alu
chr186119441GA0.00905ZNHIT6-FALSE
chr1168218543AG7.78857E-07.FALSEAluSzSINE,Alu
chr1179829595TC0.00115TOR1AIP2-TRUEAluJrSINE,Alu
chr138411445GA0.00625INPP5B-FALSE
chr1109239335GT0.00011PRPF38B+FALSE
chr16282426TC0.00513ICMT-TRUEAluSzSINE,Alu
chr136067925TC2.33961E-06PSMB2-TRUEAluSzSINE,Alu
chr1953155674TC1.27993E-05ZNF83-TRUEAluSgSINE,Alu
chr1121134245CT0.00174SRGAP2-AS1,SRGAP2B,SRGAP2C+,-FALSE(TTTCCT)nSINE,Alu
chr1145513017AG3.59549E-05NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr2198416726TA0.00378HSPE1-MOB4,MOB4+FALSE
chr543574976TC0.00613NNT-AS1-TRUEAluSq2SINE,Alu
chr1541597484AG0.00619.FALSEAluSz6SINE,Alu
chr1145369709AG0.00073NBPF20,NBPF10+TRUEL1MC4SINE,Alu
chr3195411991CA0.00058SDHAP2+FALSE
chr211323108TA0.00100ROCK2-FALSE(TA)nSINE,Alu
chr1725640011AG0.00228WSB1+TRUEAluSxSINE,Alu
chr116958064AG0.00446.FALSE
chr489625427GC0.00025HERC3+FALSE
chr146076462AG1.23194E-07NASP+TRUEAluSxSINE,Alu
chr811701429TC0.00758CTSB-TRUEAluSx1SINE,Alu
chr1530781885CT0.00380.FALSE
chr244114074GA0.00246LRPPRC-FALSEAluSz6SINE,Alu
chr2201774185TC6.12175E-05.FALSEAluSzSINE,Alu
chr333185036GA0.00573CRTAP+FALSEL2aSINE,Alu
chr3195242996CA0.00136PPP1R2-FALSE
chr3196670098TC0.00019NCBP2-AS2+FALSE
chr119542250TC0.00780LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr299208209GA0.00609.FALSE
chr18938276TA0.00178ENO1-FALSE
chr128825337AG0.00167PHACTR4+TRUEAluSgSINE,Alu
chr1145293515AG0.00885NBPF20,NBPF10+FALSE
chr1051612914TC0.00063TIMM23B,TIMM23+,-FALSE
chr224225554AG0.00419.FALSEAluSq2SINE,Alu
chr12133314509TC0.00229ANKLE2-TRUEAluJrSINE,Alu
chr11417649TG0.00274ATAD3B+FALSE
chr417804847TC0.00306DCAF16-TRUEAluSxSINE,Alu
chr133219771GC0.00256KIAA1522+FALSE
chr239210398AT0.00180SOS1-FALSE
chr42940085TC0.00801NOP14-AS1,NOP14+,-FALSEAluSpSINE,Alu
chr159142713TC0.00078MYSM1-FALSE
chr5125962354AG3.71532E-05PHAX+TRUEAluScSINE,Alu
chr185785557TA0.00141DDAH1-FALSE
chr1610626624TC0.00334EMP2-FALSE(T)nSINE,Alu
chr439552070TC0.00068UGDH-AS1,SMIM14+,-FALSEAluSxSINE,Alu
chr170611296AT0.00061LRRC40-FALSE
chr2236677551TC7.06365E-05MYH9-FALSE
chr63022544TC0.00440HTATSF1P2-TRUEAluJrSINE,Alu
chr231491690TC0.00335.FALSE
chr5149363214AG6.58903E-07SLC26A2+TRUEAluJrSINE,Alu
chr1160966301TC8.33949E-06F11R-TRUEAluSgSINE,Alu
chr3192515510GT0.00559MB21D2-FALSE
chr47765042CT0.00903AFAP1,AFAP1-AS1+,-FALSE
chr1730327115CT0.00522SUZ12+FALSE
chr110520117TC0.00188.FALSEAluSxSINE,Alu
chr7128294489GT0.00354LINC01000+FALSE
chr375474643TC0.00850FAM86DP-TRUEAluJoSINE,Alu
chr1109475706TC0.00375GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr133086876TC0.00399ZBTB8OS-TRUEAluYSINE,Alu
chr312877522AT0.00956RPL32-FALSE
chr4177252326AG0.00098SPCS3+TRUE
chr8144684474TC0.00058.FALSE
chr642857542TA0.00029RPL7L1+FALSEMIRcSINE,Alu
chr1541590999AG0.00049OIP5-AS1+TRUEAluSx1SINE,Alu
chr110517290TC0.00060.FALSEAluJrSINE,Alu
chr1145511988AG0.00131NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr18045340CA0.00285PARK7+FALSE
chr151873951GA1.40484E-05EPS15-FALSE
chr1118502684GA0.00682WDR3,SPAG17+,-FALSE
chr1762109CT0.00026LINC00115-FALSE
chr153291408AG0.00931ZYG11B+TRUEAluJrSINE,Alu
chr928403GT1.21037E-06WASH1-FALSEMIRSINE,Alu
chr237328075TC2.30710E-05.FALSE
chr127204437TC0.00319.FALSEAluSg7SINE,Alu
chr5122165480CT0.00221SNX2+FALSE(AC)nSINE,Alu
chr2132278713TC0.00317LOC150776+FALSE
chr540832555AT5.95918E-06RPL37-FALSE
chr76501833AT0.00032KDELR2-FALSE
chr116928737CT0.00796NBPF1-FALSEERVL-E-intSINE,Alu
chr349453834CT0.00518TCTA+FALSE
chr1149913733TC0.00143OTUD7B-TRUEMER96BSINE,Alu
chr1154317153CT0.00567ATP8B2+FALSE
chrX77084038TC0.00265MAGT1-TRUEAluSzSINE,Alu
chr340578843AG0.00749ZNF621+TRUEAluJrSINE,Alu
chr2217366674AG0.00889.FALSEAluSzSINE,Alu
chr133148691AG0.00117SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr268402796CT0.00656PNO1+FALSE
chr1145116149TA0.00585NBPF20,SEC22B+FALSE
chr128825465AG0.00496PHACTR4+TRUEAluSgSINE,Alu
chr1589803950CT0.00698FANCI+FALSE
chrX16781687AG0.00298.FALSEAluSx1SINE,Alu
chr116929279GA0.00138NBPF1-FALSEERVL-E-intSINE,Alu
chr344791355TC0.00468KIAA1143-TRUEAluJrSINE,Alu
chr175171751TC0.00161CRYZ-FALSE
chr131905906TA0.00092SERINC2+FALSE
chr193467756CT0.00485NFIC+FALSE(TA)nSINE,Alu
chr1474526155TC0.00054BBOF1,ALDH6A1+,-FALSEAluSpSINE,Alu
chr1155695985AG0.00031DAP3+TRUEAluSpSINE,Alu
chr133148740AG0.00210SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr717384440AG0.00373AHR+TRUEAluSxSINE,Alu
chr11152601AG0.00075SDF4-FALSE
chr342826041TG5.78537E-12HIGD1A-FALSE
chr1100657416CT0.00102DBT-FALSEAluJbSINE,Alu
chr2206983267TC0.00133.FALSEAluJbSINE,Alu
chr132638906CT4.63739E-10KPNA6+FALSE
chr1171561203TG0.00075PRRC2C+FALSE
chr3120046601GT0.00282LRRC58-FALSEAluSxSINE,Alu
chr1179310439CT0.00907SOAT1+FALSE
chr220401854AT2.80783E-05SDC1-FALSE
chr119542401TC0.00010LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr4177252326AG0.00554SPCS3+TRUE
chr1112170151AG0.00137RAP1A+FALSEL1ME4aSINE,Alu
chr1121115958TC0.00818SRGAP2-AS1,SRGAP2D,SRGAP2B,SRGAP2C+,-FALSE
chr110518591AT0.00811.FALSE
chr1144614931GA0.00469NBPF20+FALSE
chr272968439TC0.00148EXOC6B-FALSE
chr730616247TC0.00887LOC401320-FALSETHE1BSINE,Alu
chr128825331AG1.84239E-05PHACTR4+TRUEAluSgSINE,Alu
chr4177252238AG9.63526E-05SPCS3+TRUE
chr132801724TG0.00816MARCKSL1-FALSE
chr3124688639CA0.00165HEG1-FALSE
chr1194863488CT0.00615ENDOD1+FALSE
chr1117532372GT0.00678PTGFRN+FALSE
chr1145513114AG6.80046E-05NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr2160659996GA0.00177LY75-CD302,LY75-FALSE
chr439550978TC0.00558UGDH-AS1,SMIM14+,-FALSEAluSzSINE,Alu
chr127876482CA0.00687AHDC1-FALSE
chr16582221TC0.00879NOL9-TRUEAluSq4SINE,Alu
chr2029631604GA0.00045FRG1BP+FALSE
chr2203430456TG0.00162BMPR2+FALSE
chr152816612TC0.00890CC2D1B-TRUEAluSx1SINE,Alu
chr122109370GA0.00371USP48-FALSE
chr128825331AG0.00051PHACTR4+TRUEAluSgSINE,Alu
chr154692674AG0.00864SSBP3-FALSE
chr2025428547AG7.92315E-05GINS1+TRUEAluJbSINE,Alu
chr4169299528TC0.00745DDX60L-FALSE
chr10117823566GT0.00433GFRA1-FALSE(ATC)nSINE,Alu
chr310192747AG0.00065VHL+TRUEAluSx1SINE,Alu
chr167874697TC0.00119SERBP1-TRUEAluSx3SINE,Alu
chr1176736712AG0.00027ACER3+TRUEAluSzSINE,Alu
chr1680636808CT0.00881CDYL2-FALSE
chr1145512925AG0.00238NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr344791062TC0.00124KIAA1143-FALSE
chr127732103CT0.00786WASF2-FALSE
chr642857136AG2.38933E-09RPL7L1+TRUEAluSpSINE,Alu
chr1453243438TC7.89901E-12GNPNAT1-TRUEAluSx3SINE,Alu
chr720178490TC0.00028MACC1,LOC101927668-TRUEAluYSINE,Alu
chr1194801635GT0.00844SRSF8+FALSE
chr1144931330CT0.00194NBPF20,PDE4DIP+,-FALSE
chr110521170TC0.00104DFFA-TRUEAluYSINE,Alu
chr425236017TC2.76644E-09PI4K2B+FALSE
chr19160900TC0.00628.FALSEAluJbSINE,Alu
chr1206635244TA0.00188SRGAP2+FALSE
chr131905886CA0.00226SERINC2+FALSE
chr3195460892AG0.00057.FALSEAluSgSINE,Alu
chr110519932TC0.00710.FALSEAluJrSINE,Alu
chr1160112392GA0.00701ATP1A2+FALSEAluSx3SINE,Alu
chr1200375418CT0.00671ZNF281-FALSE
chr766105198CA0.00456KCTD7+FALSE
chr5149363214AG0.00040SLC26A2+TRUEAluJrSINE,Alu
chr127181647GA0.00103ZDHHC18+FALSE
chr110517313TC0.00742.FALSEAluJrSINE,Alu
chr1110949720CT0.00666LAMTOR5-FALSEL1ME4bSINE,Alu
chr261764916AC0.00361XPO1-FALSE(AC)nSINE,Alu
chr299813003AG0.00226MRPL30+TRUEAluJbSINE,Alu
chr1151374016AG0.00822PSMB4+FALSE
chr1217688165CA0.00343GPATCH2-FALSE
chr165692498TC0.00356AK4+FALSE(T)nSINE,Alu
chr471682381TC0.00037GRSF1-TRUEAluSz6SINE,Alu
chr1958361328GC0.00972ZNF587+FALSE
chr1114455907GA0.00705DCLRE1B+FALSE
chr8145159705GA0.00383MAF1+FALSE
chr1226333560AT0.00339ACBD3-FALSE(CAAAA)nSINE,Alu
chr35258985TC1.48069E-09EDEM1+FALSE
chr11125526125AG0.00374CHEK1+TRUEFRAMSINE,Alu
chr1109818159GT0.00419CELSR2+FALSE
chr642856905AG4.80826E-12RPL7L1+TRUEAluSpSINE,Alu
chr417802819TC0.00409DCAF16-TRUEAluSzSINE,Alu
chr144401225TC0.00802ARTN+FALSE
chr1143399383TA0.00053.FALSEL1MC4SINE,Alu
chr1075008797TC0.00824DNAJC9-AS1,MRPS16+,-FALSEAluJrSINE,Alu
chr2220406239TG0.00035CHPF-FALSEMIRbSINE,Alu
chr3127790249AG0.00276RUVBL1,SEC61A1+,-FALSE
chr291843471CT0.00105LOC654342-FALSE
chr871550832TC0.00234LACTB2-AS1,LACTB2+,-FALSE
chr1229738170TG0.00168TAF5L-FALSE
chr1013320129AG0.00830PHYH-FALSE
chr1143186597GA0.00644LOC102723769-FALSE
chr128836912AG3.63020E-05SNHG3,RCC1+TRUEAluScSINE,Alu
chr1180855948GA0.00218XPR1+FALSE
chr122200473CT0.00039HSPG2-FALSE
chr110519946TC0.00080.FALSEAluJrSINE,Alu
chr1161559407AG0.00237FCGR2C+FALSE
chr1173860808AG0.00042.FALSEFLAM_ASINE,Alu
chr133148216AG0.00321SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr340503729AG5.91625E-05RPL14+FALSE
chr848890293AG0.00125MCM4+TRUEAluJbSINE,Alu
chr349131374GC0.00905QRICH1-FALSE(CCG)nSINE,Alu
chr116935130CT0.00288NBPF1-FALSE
chr1541590973AG1.61675E-06OIP5-AS1+TRUEAluSx1SINE,Alu
chr477997064AG0.00283CCNI-FALSE(A)nSINE,Alu
chr135648712GA0.00298SFPQ-FALSE
chr638670804GC0.00400GLO1-FALSE
chr4165998654TC0.00953TMEM192-TRUEAluSgSINE,Alu
chr1230979247GA0.00137C1orf198-FALSE
chr2191067766TC0.00034C2orf88+FALSE
chr2101893247CA0.00237RNF149-FALSE(A)nSINE,Alu
chr127205632TC0.00471.FALSEFLAM_ASINE,Alu
chr9100777784TA0.00080ANP32B+FALSE
chr165134599GC0.00355ALG1,EEF2KMT+,-FALSE
chr4106767318AG1.71247E-06GSTCD+TRUEAluJbSINE,Alu
chr125894467AT0.00136LDLRAP1+FALSEMIRbSINE,Alu
chr633384325GT0.00456.FALSE
chr133071096AG0.00238ZBTB8A+TRUEAluSx1SINE,Alu
chr178142901TC0.00332ZZZ3-TRUEAluSxSINE,Alu
chr274442407AG0.00384MTHFD2+FALSE
chr116892135GA0.00508NBPF1-FALSE
chr4152020780CT0.00925RPS3A+FALSE
chr1204524846AG0.00940MDM4+TRUEAluSxSINE,Alu
chr12133298465AG5.98085E-08PGAM5+TRUEAluSpSINE,Alu
chr3194999609GT0.00796ACAP2-FALSE
chr1688789699AC0.00936PIEZO1-FALSE
chr128836872AG0.00019SNHG3,RCC1+TRUEAluScSINE,Alu
chr1145689611CA0.00142NBPF20,NBPF10+FALSEAluSgSINE,Alu
chr15937327CT0.00703NPHP4-FALSE
chr5133918133AC0.00413JADE2+FALSE
chr1611445552TC0.00533RMI2+FALSE
chr110520076TC0.00763.FALSEAluSxSINE,Alu
chr39519219CT0.00146SETD5+FALSE
chrX73421601TC0.00219FTX-TRUEL1MB7SINE,Alu
chr1245006499CG0.00171COX20+FALSE
chr1345911310AT0.00685TPT1-FALSE
chr128825486AG0.00049PHACTR4+TRUEAluSgSINE,Alu
chr9125609938AT0.00904.FALSE
chr112677525GA0.00122DHRS3-FALSE(A)nSINE,Alu
chr3120113403TG2.55249E-11FSTL1-FALSE
chr110518733TC0.00050.FALSEAluSx1SINE,Alu
chr744842429TG0.00384PPIA+FALSE
chr18877520AT0.00308RERE-FALSE
chr1146740502CG0.00692CHD1L+FALSE
chr540829980TC0.00752.FALSEAluSpSINE,Alu
chr76064010CA0.00304EIF2AK1-FALSE
chr3172365832TG0.00011NCEH1-FALSE
chr153289852AG0.00020ZYG11B+TRUEFRAMSINE,Alu
chr185785556AC0.00034DDAH1-FALSE
chr145279900TC0.00073.FALSE(TCTT)nSINE,Alu
chr1200375846GT0.00040ZNF281-FALSE(T)nSINE,Alu
chr476568676TA0.00051G3BP2-FALSE
chr5134302899AG0.00025.FALSEAluSq2SINE,Alu
chr116932809CT0.00074NBPF1-FALSEL1MC2SINE,Alu
chr1748771488CA0.00148ANKRD40-FALSEAluSzSINE,Alu
chr116945570AG0.00251CROCCP2-FALSE
chr116909220TC0.00449NBPF1-FALSE
chr136535560AG0.00059.FALSEAluSx1SINE,Alu
chr110440643AG0.00055KIF1B+TRUEAluSxSINE,Alu
chr1235612219TA0.00148TBCE,B3GALNT2+,-FALSE
chr348787674TC0.00240PRKAR2A-TRUEAluSpSINE,Alu
chr1469254646TC0.00181ZFP36L1-FALSE
chr120978332AT0.00765PINK1-AS,DDOST-FALSEAluYSINE,Alu
chr16282400TC0.00809ICMT-TRUEAluSzSINE,Alu
chr116892274AT0.00371NBPF1-FALSE
chr128835937AG0.00061SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr642856029AG7.18756E-05RPL7L1+TRUEAluSzSINE,Alu
chr1110023610GA0.00636SYPL2+FALSE
chr1121115958TC0.00147SRGAP2-AS1,SRGAP2D,SRGAP2B,SRGAP2C+,-FALSE
chr116905869GA0.00027NBPF1-FALSE
chr1224380757AG0.00618DEGS1+FALSEAluSxSINE,Alu
chr633268621TC0.00367.FALSEAluYSINE,Alu
chr3195412715TC0.00837SDHAP2+FALSE
chr146032974TC0.00196AKR1A1+FALSE

Differential Expression Gene Analysis