Dataset Overview
RBPNCBP2
Knock-MethodshRNA
RBP FamilyRRM_1
Biosample NameHepG2
Tissue TypeLiver
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR030ARO
PlatformHiSeq
Pubmed ID32252787

NCBP2 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of NCBP2
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of NCBP2


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr1474526154TC0.00030BBOF1,ALDH6A1+,-FALSEAluSpSINE,Alu
chr139794147AC9.03176E-05MACF1+FALSE
chr116933625AG0.00536NBPF1-FALSEGA-richSINE,Alu
chr11634860GT0.00659CDK11B,CDK11A-FALSE
chr1011912065CG0.00191PROSER2-AS1,PROSER2+,-FALSE
chr1742877584TC0.00489GJC1-TRUEAluSgSINE,Alu
chr532601672AT0.00563SUB1+FALSE
chr1150281090AG3.10555E-05MRPS21+TRUEAluSzSINE,Alu
chr2207146631CA9.52905E-05ZDBF2+FALSE
chr1153907297CT3.91411E-05DENND4B-FALSE(CTG)nSINE,Alu
chr224223291AG0.00512UBXN2A+TRUEAluScSINE,Alu
chr748146088AG0.00825UPP1+TRUEAluSqSINE,Alu
chr1079793877CT0.00977RPS24+FALSE
chr299772827AG4.47582E-05LIPT1+TRUEAluSx1SINE,Alu
chr246808168CT0.00377RHOQ+FALSE
chr129464349AC0.00042LOC642846+FALSE
chr146077268AG0.00012NASP+TRUEAluSc8SINE,Alu
chr2025428750AG3.17139E-06GINS1+TRUEAluJbSINE,Alu
chr341281407GT0.00011CTNNB1+FALSE
chr6122765962TA0.00362SERINC1-FALSE
chr1352989863CT0.00132VPS36-FALSE
chr186046472GT0.00409CYR61+FALSE
chr1753239140CT0.00954STXBP4+FALSEMIRSINE,Alu
chr556559238TC0.00149GPBP1+FALSE
chr1738512480CT0.00725RARA+FALSE
chr2206986233TC0.00545.FALSEAluSzSINE,Alu
chr1109239943CT0.00722PRPF38B+FALSE
chr9137330716AC0.00058RXRA+FALSE
chr120826790TC0.00208MUL1-FALSE
chr1028971536AT0.00815BAMBI+FALSE
chr286947783CT0.00515RNF103-CHMP3,RMND5A+,-FALSE
chr345153708GA4.36430E-08CDCP1-FALSE
chr1161488017TC5.55712E-05FCGR2A+FALSEMER57FSINE,Alu
chr1194863488CT0.00615ENDOD1+FALSE
chr143272841AT0.00029SVBP-FALSE
chr186049391TA0.00019CYR61+FALSE
chr1118166096CT0.00861FAM46C+FALSE
chr11252662TC0.00235CPSF3L-TRUEAluSpSINE,Alu
chr167874859TC0.00027SERBP1-TRUEAluSxSINE,Alu
chr4187509420GA0.00121FAT1-FALSE
chr110043527AG0.00811NMNAT1+TRUEAluSx3SINE,Alu
chr1167973198AG0.00061DCAF6+FALSE
chr2127826533AG0.00942BIN1-FALSE
chr133148691AG2.12433E-06SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr1298943103AG0.00528TMPO+TRUEAluSzSINE,Alu
chr596503523CT0.00072RIOK2-FALSE
chr538478062AT0.00914LIFR-FALSE
chr1193058937CT0.00195TROVE2+FALSEAluScSINE,Alu
chr595130804CT0.00792RHOBTB3+FALSEAluSzSINE,Alu
chr2241825926TC7.75373E-05C2orf54-FALSE
chr1117530188AG0.00199PTGFRN+FALSE
chr239210398AT0.00180SOS1-FALSE
chr466439443TC0.00593EPHA5-FALSE
chr124022912GA4.29449E-05RPL11+FALSE
chr642856158AG0.00118RPL7L1+TRUEAluSzSINE,Alu
chr1144931101GA0.00012NBPF20,PDE4DIP+,-FALSE
chr1114306369AT0.00834RSBN1-FALSE
chr1116238478CT0.00834VANGL1+FALSE
chr193465142TC0.00100NFIC+FALSE
chr42940026TC3.38773E-05NOP14-AS1,NOP14+,-FALSEAluSpSINE,Alu
chr652365328TG0.00983TRAM2-FALSE(T)nSINE,Alu
chr17828190AC0.00049CAMTA1+FALSE(A)nSINE,Alu
chr540832551AT5.78892E-08RPL37-FALSE
chr6150046603TC0.00730NUP43-TRUEAluSq2SINE,Alu
chr226613949AG0.00669EPT1+FALSE
chr116932783GC0.00843NBPF1-FALSEL1MC2SINE,Alu
chr811700231TC1.53992E-05CTSB-TRUEAluSq2SINE,Alu
chr128662053GA0.00158MED18+FALSEAluSq2SINE,Alu
chr116889127AG0.00213NBPF1-FALSEL1MC4SINE,Alu
chr1565442523GA0.00068CLPX-FALSEAluSg4SINE,Alu
chr3126156660CG0.00182ZXDC-FALSE
chrX77083952TC0.00045MAGT1-TRUEAluSzSINE,Alu
chr116891365GA1.42078E-05NBPF1-FALSE
chr3141668758TC2.84489E-05TFDP2-TRUEAluSzSINE,Alu
chr1061548852GA0.00693CCDC6-FALSE
chr133148736AG0.00849SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr1117644949CG0.00862TTF2+FALSE
chr12123253851AG0.00470DENR+FALSE(AT)nSINE,Alu
chr1234744480GA0.00409IRF2BP2-FALSE
chr7924602AG0.00195GET4+TRUEAluJbSINE,Alu
chr1208198625CT8.83580E-05PLXNA2-FALSE
chr173561396CT0.00322CTNS+FALSE
chr1942753649GC0.00723ERF-FALSE
chr110519982TC3.22355E-05.FALSEAluJrSINE,Alu
chr237328034TC8.99638E-05.FALSE
chr1212114663GA0.00858INTS7-FALSE
chr1100316589AG0.00147AGL+FALSE
chr1919791273AG0.00121ZNF101+TRUEAluSq2SINE,Alu
chr5174956494TA2.51545E-05SFXN1+FALSE
chr2203744240TC0.00595.FALSEAluSxSINE,Alu
chr19160989TC0.00041.FALSEAluJbSINE,Alu
chr439460539GA0.00323RPL9-FALSE
chr1022824831CT0.00702PIP4K2A-FALSE
chr128661656AG0.00012MED18+TRUEAluSgSINE,Alu
chr119543361AT0.00076LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr147142538GA0.00870EFCAB14-AS1,EFCAB14+,-FALSE
chr177124772GA0.00175ACADVL+FALSE
chr1423300663GA0.00120MRPL52+FALSEMIRbSINE,Alu
chr314986447TC2.03372E-08FGD5-AS1-TRUEAluSq2SINE,Alu
chr3156258319TC0.00012SSR3-TRUEAluYk3SINE,Alu
chr830536151TC5.90006E-09GSR-TRUEAluJrSINE,Alu
chr135644502AT0.00702SFPQ-FALSE(A)nSINE,Alu
chr1214529320TG0.00365PTPN14-FALSEAluJbSINE,Alu
chr537291504TC0.00878.FALSEAluSx3SINE,Alu
chr1114940209GT5.13716E-05TRIM33-FALSE(T)nSINE,Alu
chr13730400TC0.00800CEP104-TRUEAluSx3SINE,Alu
chr642856157AG0.00081RPL7L1+TRUEAluSzSINE,Alu
chr1610623571TC0.00329EMP2-TRUEAluSpSINE,Alu
chr110520378TC0.00743.FALSEAluSx1SINE,Alu
chr116929100CT0.00249NBPF1-FALSELTR16B2SINE,Alu
chr631321916AG0.00000.FALSE
chr1144594308GA0.00577NBPF20+FALSE
chr11209196CG0.00581UBE2J2-FALSE(CCG)nSINE,Alu
chr274442550AT0.00242.FALSE
chr170904800GT0.00678CTH+FALSE
chr110521172TC0.00178DFFA-TRUEAluYSINE,Alu
chr237331753TC0.00026.FALSEAluJbSINE,Alu
chr1207942432AG0.00029CD46+TRUEAluSg4SINE,Alu
chr565120054CT0.00625NLN+FALSE
chr285837797TC0.00050USP39,C2orf68+,-FALSEAluSxSINE,Alu
chr7102119322TC0.00834POLR2J-FALSE
chr2202252539GA0.00293TRAK2-FALSE
chr126449336AG0.00343PDIK1L+FALSE
chr116889633TC0.00217NBPF1-TRUE
chr1913884096AG0.00049MRI1+TRUEAluSzSINE,Alu
chr848889705AG0.00339MCM4+TRUEAluSx3SINE,Alu
chr1153920564AG0.00057CRTC2-FALSE
chr417803616TC4.59289E-05DCAF16-TRUEAluYSINE,Alu
chr182763697CT8.35636E-08SMCHD1+FALSE
chr286252222TC0.00468POLR1A-TRUEAluSq2SINE,Alu
chr159124803CT0.00974MYSM1-FALSE
chr110518052TC0.00791.FALSEAluJrSINE,Alu
chr1757281125AG0.00204PRR11+TRUEAluSzSINE,Alu
chr146075191CA0.00056NASP+FALSEA-richSINE,Alu
chr1205683408CT0.00082NUCKS1-FALSE
chr596372165GA0.00149.FALSE
chr1131452571AG0.00084DNAJC24+TRUE
chr642857136AG2.38933E-09RPL7L1+TRUEAluSpSINE,Alu
chr110517512TC0.00498.FALSEAluSx1SINE,Alu
chr350327662GA0.00707IFRD2-FALSE
chr128835937AG0.00061SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr167874697TC0.00190SERBP1-TRUEAluSx3SINE,Alu
chr2176792536GT0.00211LNPK-FALSE
chr1269237534AG0.00106MDM2+TRUE
chr110520383TC0.00401.FALSEAluSx1SINE,Alu
chr167875106CA0.00403SERBP1-FALSE(AC)nSINE,Alu
chr1153720690GA0.00786INTS3+FALSE
chr127634734GA0.00978WDTC1+FALSE
chr1145688664AT0.00087NBPF20,NBPF10,RNF115+FALSE
chr1911560438AG7.61449E-05PRKCSH+FALSEAluSxSINE,Alu
chr132801724TG0.00816MARCKSL1-FALSE
chr1226333561AG0.00373ACBD3-FALSE
chr114599TA0.00304WASH7P-FALSE
chr178414329GA0.00303FUBP1-FALSEA-richSINE,Alu
chr1946289409CT6.23760E-05DMWD-FALSE
chr626095462AG0.00113HFE+TRUEAluYSINE,Alu
chr119542310TC0.00873LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr111810674GA0.00279AGTRAP+FALSE
chr7100279005CA0.00176GIGYF1-FALSE(A)nSINE,Alu
chr119810692AC0.00069CAPZB-FALSE
chr5180682612AT0.00235CTC-338M12.4+FALSE
chr2236677551TC7.06365E-05MYH9-FALSE
chr119542456TC0.00323LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1072648336CT0.00461PCBD1-FALSE(GGCCG)nSINE,Alu
chr1223178477CT0.00519DISP1+FALSE
chr19331101AG3.95613E-06H6PD+FALSEAluSxSINE,Alu
chr1108113839TC1.78857E-05VAV3-FALSE
chr1225156655CT0.00671DNAH14+FALSE
chr126901090CT0.00056RPS6KA1+FALSE
chr140537923GA0.00609CAP1+FALSE(A)nSINE,Alu
chr1262928633GA0.00307MON2+FALSE
chr150906945CT0.00178FAF1-FALSE
chr1298943201AG9.51066E-07TMPO+TRUEAluSzSINE,Alu
chr9115446725TC0.00037INIP-TRUEAluJrSINE,Alu
chr19328120AG1.75282E-05H6PD+TRUEAluJrSINE,Alu
chr47762313CG5.86540E-10AFAP1,AFAP1-AS1+,-FALSE
chr1919791276AG0.00069ZNF101+TRUEAluSq2SINE,Alu
chr1079552107GA0.00092DLG5-FALSE
chr393846831GA0.00547.FALSEAluSq2SINE,Alu
chr2218571474AG1.16198E-07PEX26+TRUEAluSzSINE,Alu
chr5125961509AG0.00141PHAX+TRUEAluSz6SINE,Alu
chr131342374AC0.00446SDC3-FALSE(A)nSINE,Alu
chr1541591451AG1.78515E-09OIP5-AS1+TRUEAluSxSINE,Alu
chr119984104AC0.00402MINOS1-NBL1,NBL1+FALSE
chr119542310TC0.00581LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr138174987TC0.00032CDCA8+FALSE
chr237329307TC0.00102.FALSEAluJr4SINE,Alu
chr19160989TC0.00183.FALSEAluJbSINE,Alu
chr19160900TC0.00893.FALSEAluJbSINE,Alu
chr3172351006CG6.14326E-06NCEH1-FALSE
chr3170609385CT0.00212EIF5A2-FALSE
chr3156259348GA0.00899SSR3-FALSEAluSq2SINE,Alu
chr264327544GT0.00917PELI1-FALSE
chr1232532499AT0.00119.FALSE
chr6160101733TC0.00784SOD2-TRUEAluSzSINE,Alu
chr1246829742TC0.00037CNST+FALSE(TGTG)nSINE,Alu
chr1207942456AG0.00322CD46+TRUEAluSg4SINE,Alu
chr1205056476TC0.00096RBBP5-FALSEAluSxSINE,Alu
chr135650014CA0.00012SFPQ-FALSE
chr116478619GA0.00656TRIM3-FALSE
chr19416574AG0.00144SPSB1+FALSE
chr146077345AG0.00024NASP+TRUEAluSc8SINE,Alu
chr1118068558GA0.00644.FALSE
chr11595602AG9.14189E-05CDK11B,SLC35E2B-FALSEAluJrSINE,Alu
chr642855979AG8.12389E-06RPL7L1+TRUEAluSzSINE,Alu
chr3127790249AG0.00056RUVBL1,SEC61A1+,-FALSE
chr119934679GA0.00354MINOS1,MINOS1-NBL1,RPS14P3+FALSE
chr1220231276TC0.00937RNU5F-1,BPNT1+,-FALSEAluYSINE,Alu
chr4109734309TC0.00197COL25A1-FALSE
chr5154194420GA0.00137LARP1+FALSE
chr3197612430AG0.00095.FALSEAluSpSINE,Alu
chr6116600774CG0.00180DSE,TSPYL1+,-FALSE
chr1145376020GA0.00478NBPF20,NBPF10+FALSE
chr110518052TC7.90759E-05.FALSEAluJrSINE,Alu
chr2187544222AG0.00411ITGAV+FALSE
chr2144331206AG0.00167.FALSEAluSzSINE,Alu
chr18072233TC0.00647ERRFI1-FALSE
chr20279774AC0.00056ZCCHC3+FALSEL2bSINE,Alu
chr178483452CT0.00739DNAJB4+FALSEL1MB7SINE,Alu
chr1117648345AG0.00739.FALSE
chr2204055454TC0.00293NBEAL1+FALSE
chr841399912CA0.00056LOC102723729,GINS4+,-FALSEAluSx3SINE,Alu
chr1114940211GT0.00925TRIM33-FALSE(T)nSINE,Alu
chr1144823139GA0.00941NBPF20,NBPF9+FALSE
chr133149502AG0.00045SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr153291434AG6.17060E-06ZYG11B+TRUEAluJrSINE,Alu
chr132953296AG5.26589E-05ZBTB8B+TRUEAluSzSINE,Alu
chr261764922GC0.00679XPO1-FALSE
chr1205737682AG0.00320RAB29-FALSEAluSq2SINE,Alu
chr827661035TA0.00314ESCO2+FALSEA-richSINE,Alu
chr136529575AG2.40551E-05.FALSEAluJrSINE,Alu
chr1179042692AG0.00707FAM20B+TRUEAluSx1SINE,Alu
chr187572817CT0.00514HS2ST1+FALSE
chr4169847647AT0.00328PALLD+FALSE
chr1298943187AG2.29648E-09TMPO+TRUEAluSzSINE,Alu
chr190496700AG0.00486ZNF326+FALSE
chr133149495AG0.00421SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr2216903544TC0.00929PECR-TRUEAluSx3SINE,Alu
chr398531342AG0.00607DCBLD2-FALSE
chr6109001952AG0.00978FOXO3+FALSE(A)nSINE,Alu
chr5130537223AG0.00044LYRM7+TRUEAluSpSINE,Alu
chr348787042TC1.97898E-05PRKAR2A-TRUEAluSx3SINE,Alu
chr1628620957TC0.00753SULT1A1-TRUEAluJrSINE,Alu
chr1675479331TC0.00725TMEM170A-TRUEAluJbSINE,Alu
chr2105883650TG0.00086TGFBRAP1-FALSE
chr1150937959AG3.24660E-05CERS2-FALSEG-richSINE,Alu
chr1109737090GA0.00173KIAA1324+FALSE
chr187328397AT0.00252SEP15-FALSE
chr1959095469AG5.44182E-05CENPBD1P1+TRUEAluJbSINE,Alu
chr2207942527AT0.00107KLF7-FALSE
chr568463014GT0.00011CCNB1+FALSE
chr261764895CA0.00862XPO1-FALSE(AC)nSINE,Alu
chr11288481CA0.00013MXRA8-FALSE
chr110517952CA0.00341.FALSE
chr152381348TG0.00500RAB3B-FALSE
chr2120980896TG0.00132TMEM185B-FALSE
chr155316322AG0.00266DHCR24-FALSE
chr1160967938TC0.00270F11R-TRUEAluSpSINE,Alu
chr128825418AG0.00961PHACTR4+TRUEAluSgSINE,Alu
chr42940085TC8.20099E-05NOP14-AS1,NOP14+,-FALSEAluSpSINE,Alu
chr5125962175AG0.00020PHAX+TRUEAluScSINE,Alu
chr9138798859CA0.00291CAMSAP1-FALSE
chr1013320236CT0.00011PHYH-FALSE
chr136068052GT1.69686E-12PSMB2-FALSEL1ME4bSINE,Alu
chr3182639121AG0.00048ATP11B+FALSE
chr2198416726TA0.00378HSPE1-MOB4,MOB4+FALSE
chr110044272AG0.00737NMNAT1+TRUEAluSx1SINE,Alu
chr179110518AG0.00997IFI44L+FALSE
chr1179042482AG0.00301FAM20B+TRUEAluSx1SINE,Alu
chr310191943GA2.29886E-07VHL+FALSE
chr1101444065TC0.00927SLC30A7+FALSEMIR3SINE,Alu
chr2272203CT1.58440E-08ACP1+FALSE
chr12125512173AG0.00285.FALSEAluSx1SINE,Alu
chr126603883GA0.00088CEP85+FALSE
chr167874689TC7.42611E-10SERBP1-TRUEAluSx3SINE,Alu
chr1165877666TC0.00189UCK2+FALSE(T)nSINE,Alu
chr1100489835AG0.00043SLC35A3+TRUEAluSgSINE,Alu
chr153711735GC0.00884LRP8-FALSE
chr186117191TC1.34616E-06ZNHIT6-TRUEAluSgSINE,Alu
chr111847346GC0.00547C1orf167,MTHFR+,-FALSE
chr1249745500AG0.00265DNAJC22+TRUEAluSx3SINE,Alu
chr18931947TC0.00059ENO1-FALSE
chr110519932TC5.00916E-05.FALSEAluJrSINE,Alu
chr1148556087GC0.00106.FALSE
chr175288078AG0.00081RABEP1+FALSE
chr489181478TC0.00656PPM1K-TRUEAluSx1SINE,Alu
chr146075604AG0.00365NASP+TRUEAluSx4SINE,Alu
chr23627302AT0.00021RPS7+FALSE
chr110517526TC0.00364.FALSEAluSx1SINE,Alu
chr348485452TA0.00363TMA7+FALSE
chr5130540368AC0.00420LYRM7+FALSETigger4aSINE,Alu
chrX54587254AG0.00019GNL3L+TRUEAluSq2SINE,Alu
chr110520296TC0.00765.FALSEAluSxSINE,Alu
chr652267967AC0.00424PAQR8+FALSE
chr110177553CG0.00474UBE4B+FALSE
chr110042987AG0.00149NMNAT1+TRUEAluScSINE,Alu
chr1227574433AG0.00473ARNTL2,ARNTL2-AS1+,-FALSEAluSzSINE,Alu
chr153291344AG0.00088ZYG11B+FALSE(A)nSINE,Alu
chr5125961534AG0.00233PHAX+TRUEAluSz6SINE,Alu

Differential Expression Gene Analysis