RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	181057874	T	G	0.00099	IER5	+	FALSE
chr14	102547384	A	T	0.00403	HSP90AA1	-	FALSE
chr16	57505635	G	T	0.00974	POLR2C	+	FALSE
chr15	90819619	A	G	5.14004E-06		.	FALSE	AluSx	SINE,Alu
chr1	10520684	T	C	0.00125	DFFA	-	TRUE	AluSc8	SINE,Alu
chr16	19513719	T	A	0.00730	GDE1	-	FALSE	AluJr	SINE,Alu
chr12	54634283	T	C	0.00047	CBX5	-	TRUE	AluJr	SINE,Alu
chr1	109747437	A	G	0.00104	KIAA1324	+	TRUE	AluJr4	SINE,Alu
chr1	67874849	T	C	7.36358E-05	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	1595388	A	G	0.00135	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr1	145693060	A	G	2.60299E-05	NBPF20,NBPF10	+	TRUE	AluSz6	SINE,Alu
chr1	11089835	A	G	0.00065	MASP2	-	FALSE	AluSp	SINE,Alu
chr1	10517635	T	C	0.00553		.	FALSE	AluSx1	SINE,Alu
chr1	93827764	A	G	0.00053	DR1	+	FALSE
chr1	10520154	T	C	0.00380		.	FALSE	AluSx	SINE,Alu
chr1	33148698	A	G	0.00736	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr5	79923292	C	G	0.00305	DHFR	-	FALSE	AluJr	SINE,Alu
chr2	39010088	A	G	0.00192		.	FALSE	AluSp	SINE,Alu
chr5	442075	C	A	0.00962	EXOC3-AS1	-	FALSE
chr1	19586520	A	G	6.58771E-06	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	10520819	T	C	0.00034	DFFA	-	TRUE	AluSc8	SINE,Alu
chr5	93018883	A	T	0.00181	FAM172A	-	FALSE	(TCA)n	SINE,Alu
chr1	26774225	A	G	0.00614	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr19	3540006	T	C	3.25622E-05	C19orf71	+	FALSE	AluJo	SINE,Alu
chr1	145368837	C	A	4.93702E-07	NBPF20,NBPF10	+	FALSE
chr5	68850922	G	C	0.00323	OCLN	+	FALSE	AluSx4	SINE,Alu
chr17	4928356	A	G	0.00048	KIF1C	+	TRUE	AluSz	SINE,Alu
chr3	88104168	C	T	0.00919	CGGBP1	-	FALSE
chr3	10192753	A	G	0.00069	VHL	+	TRUE	AluSx1	SINE,Alu
chr5	98109389	T	C	0.00234	RGMB	+	FALSE
chr1	114940228	C	T	0.00252	TRIM33	-	FALSE	(T)n	SINE,Alu
chr2	27315252	G	A	0.00377	KHK	+	FALSE
chr1	6585331	T	C	0.00779	NOL9	-	TRUE	FAM	SINE,Alu
chr1	97144750	T	C	0.00262		.	FALSE
chr4	36121337	T	A	0.00065	ARAP2	-	FALSE
chr1	154557171	G	A	0.00329	ADAR	-	FALSE	A-rich	SINE,Alu
chr7	102090451	A	G	0.00360	ORAI2	+	TRUE	AluSz	SINE,Alu
chr1	20826781	C	T	9.86003E-06	MUL1	-	FALSE
chr1	45975574	A	G	0.00299	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	77759578	A	G	0.00031	AK5	+	FALSE
chr19	19793729	A	G	0.00124	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr1	145284883	A	G	0.00329	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr1	89447715	T	G	0.00137	KYAT3,RBMXL1	-	FALSE
chr2	20097874	T	C	0.00769	TTC32	-	FALSE
chr1	144877176	C	T	0.00010	NBPF20,PDE4DIP	+,-	FALSE
chr2	38522643	G	T	0.00285	ATL2	-	FALSE
chr2	112252628	G	T	7.26456E-05	MIR4435-2HG	-	FALSE
chr1	16944809	G	C	0.00072	CROCCP2	-	FALSE
chr17	49042388	T	C	2.65954E-10	SPAG9	-	TRUE	AluJb	SINE,Alu
chr1	16933625	A	G	0.00536	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	19542269	T	C	0.00744	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr19	63721	T	G	0.00602	WASH5P	-	FALSE
chr3	169810385	C	T	0.00621	PHC3	-	FALSE
chr9	114696428	G	T	0.00163	UGCG	+	FALSE	(TGTTTTT)n	SINE,Alu
chr6	42855979	A	G	8.12389E-06	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr8	12283440	A	G	0.00041	FAM86B2	-	FALSE
chr1	46076533	A	G	1.88265E-05	NASP	+	TRUE	AluSx	SINE,Alu
chr10	11912065	C	G	0.00191	PROSER2-AS1,PROSER2	+,-	FALSE
chr3	101399945	A	G	0.00965	RPL24	-	FALSE
chr1	44088117	G	T	0.00731	PTPRF	+	FALSE	(T)n	SINE,Alu
chr3	45126558	C	T	0.00000	CDCP1	-	FALSE
chr1	31405694	G	A	0.00986	PUM1	-	FALSE
chr1	45244411	C	A	0.00656	RPS8	+	FALSE
chr2	174090339	A	C	2.67746E-05	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr1	116947126	C	A	4.37114E-09	ATP1A1,ATP1A1-AS1	+,-	FALSE
chrM	9756	G	A	0.00315		.	FALSE
chr12	69160574	A	G	0.00891		.	FALSE	AluJb	SINE,Alu
chr2	234183368	A	G	0.00369	ATG16L1	+	FALSE
chr1	144607285	A	C	0.00208	NBPF20	+	FALSE
chr2	30863651	A	T	0.00366	LCLAT1	+	FALSE
chr1	212910930	G	A	2.01027E-05	NSL1	-	FALSE
chr1	36529582	A	G	0.00476		.	FALSE	AluJr	SINE,Alu
chr1	210029539	G	A	0.00231	DIEXF	+	FALSE
chr4	177251290	G	A	0.00580	SPCS3	+	FALSE
chr2	27279013	A	G	6.08626E-07	AGBL5	+	FALSE
chr4	84525986	G	T	0.00081	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr22	39259541	A	G	0.00134	CBX6	-	FALSE
chr1	225684742	T	C	0.00518	ENAH	-	FALSE
chr1	117530273	A	G	0.00601	PTGFRN	+	FALSE
chr5	79276281	A	G	0.00026	MTX3	-	FALSE
chr1	1572530	A	C	0.00425	CDK11B	-	FALSE
chr1	33149338	A	G	0.00367	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr3	69038160	G	A	0.00557	EOGT	-	FALSE
chr4	190881971	A	C	0.00183	FRG1	+	FALSE
chr1	36068276	T	C	0.00067	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	46828700	A	G	0.00805	NSUN4	+	FALSE
chr1	33086876	T	C	0.00104	ZBTB8OS	-	TRUE	AluY	SINE,Alu
chr2	206986945	T	C	0.00414		.	FALSE	AluJr	SINE,Alu
chr2	55516897	A	G	1.06852E-06	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chrM	5265	C	A	0.00026		.	FALSE
chr6	47592330	T	A	0.00830	CD2AP	+	FALSE
chr1	36067817	T	C	7.91657E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr17	36104904	A	G	0.00442	HNF1B	-	FALSE	G-rich	SINE,Alu
chr1	10519912	T	C	0.00737		.	FALSE	AluJr	SINE,Alu
chr16	10625102	T	C	0.00129	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	59246520	A	C	7.56706E-05	JUN	-	FALSE
chr3	88103602	C	A	0.00284	CGGBP1	-	FALSE
chr1	230416038	G	A	0.00626	GALNT2	+	FALSE
chr2	32534897	A	G	0.00680		.	FALSE	AluSx1	SINE,Alu
chr1	33148623	A	G	0.00221	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr6	24719404	C	A	0.00024		.	FALSE
chr2	55516938	A	T	0.00265	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr15	22969232	G	A	0.00017	CYFIP1	+	FALSE
chr5	81571271	T	G	0.00827	RPS23	-	FALSE
chr2	10586904	C	T	0.00041	ODC1,SNORA80B	-	FALSE
chr4	56237899	A	G	0.00503	SRD5A3,SRD5A3-AS1	+,-	FALSE	AluSx	SINE,Alu
chr2	85776644	T	C	0.00127	GGCX	-	TRUE	AluSz6	SINE,Alu
chr5	76372541	G	C	0.00498	ZBED3	-	FALSE
chr2	128952015	A	G	0.00086	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr1	33147722	G	A	1.17176E-11	SYNC,RBBP4	+,-	FALSE
chr1	29519712	T	C	0.00017	MECR	-	TRUE	AluJb	SINE,Alu
chr1	45976220	A	G	0.00031	MMACHC	+	TRUE
chr1	36067760	T	C	0.00032	PSMB2	-	TRUE	AluSz	SINE,Alu
chr17	909317	G	A	0.00766	ABR	-	FALSE
chr1	33150642	A	G	0.00316	SYNC,RBBP4	+,-	FALSE	AluJo	SINE,Alu
chr1	177976440	C	T	0.00148	LOC730102	-	FALSE
chr1	145512930	A	G	5.47366E-06	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	28921019	A	G	0.00030	RAB42	+	TRUE	AluSx	SINE,Alu
chr7	152345392	T	C	0.00643	XRCC2	-	TRUE	AluSx1	SINE,Alu
chr2	73460314	C	T	0.00333	PRADC1	-	FALSE	(CGGCGC)n	SINE,Alu
chr1	16932144	A	C	7.50683E-06	NBPF1	-	FALSE
chr1	10044366	A	G	0.00958	NMNAT1	+	TRUE	AluSx1	SINE,Alu
chr6	1395043	T	C	0.00055	FOXF2	+	FALSE
chr1	10517527	T	C	0.00304		.	FALSE	AluSx1	SINE,Alu
chr1	205687344	C	T	0.00633	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr3	45721934	A	G	0.00011	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	168213516	A	G	0.00233		.	FALSE	AluSx1	SINE,Alu
chr5	40832551	A	T	0.00394	RPL37	-	FALSE
chr1	179044100	A	G	0.00219	FAM20B	+	TRUE	AluSx	SINE,Alu
chr3	15114385	T	C	0.00146	RBSN	-	TRUE	AluY	SINE,Alu
chr1	16944953	T	G	0.00158	CROCCP2	-	FALSE
chr1	10519951	T	C	0.00672		.	FALSE	AluJr	SINE,Alu
chr1	38423184	C	T	4.70100E-06	SF3A3	-	FALSE	AluJo	SINE,Alu
chr1	77556766	T	A	0.00576	PIGK	-	FALSE
chr1	899810	G	A	2.29962E-09	KLHL17	+	FALSE
chr1	95658344	G	A	0.00100	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr1	145688973	A	G	8.24717E-05	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	16892277	G	T	0.00021	NBPF1	-	FALSE
chr2	10179657	A	C	0.00035		.	FALSE	L1ME4b	SINE,Alu
chr11	86658271	A	C	0.00896	PRSS23,FZD4	+,-	FALSE	AluSx3	SINE,Alu
chr1	19586520	A	G	0.00305	MRTO4	+	TRUE	AluSz	SINE,Alu
chr2	37328082	T	C	1.18454E-08		.	FALSE
chr1	93297605	C	G	0.00319	RPL5	+	FALSE
chr1	45976260	C	T	0.00043	MMACHC	+	FALSE
chr7	7283569	G	A	0.00032	C1GALT1	+	FALSE	(AT)n	SINE,Alu
chr2	128950491	A	G	0.00043	UGGT1	+	TRUE	AluSc	SINE,Alu
chr1	203709034	A	G	0.00049	ATP2B4	+	FALSE
chr1	179077613	T	C	0.00731	ABL2	-	FALSE
chr1	115259543	C	T	0.00492	CSDE1	-	FALSE
chr1	38279666	C	T	0.00521	MTF1	-	FALSE	(T)n	SINE,Alu
chr20	25428384	A	G	0.00195	GINS1	+	TRUE	AluSz	SINE,Alu
chr3	183976477	C	T	0.00215	ECE2	+	FALSE
chr1	155161704	G	C	0.00034	MUC1	-	FALSE
chr9	115447531	T	C	0.00164	INIP	-	TRUE	AluJb	SINE,Alu
chr6	29911284	T	C	0.00019		.	FALSE
chr1	27678712	A	G	0.00938	SYTL1	+	TRUE	AluSx1	SINE,Alu
chr1	11119935	G	T	2.46542E-05	SRM	-	FALSE
chr4	39550085	T	C	3.55103E-05	UGDH-AS1,SMIM14	+,-	FALSE	FLAM_C	SINE,Alu
chr4	2940371	T	C	0.00150	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	145283986	C	T	0.00814	NBPF20,NOTCH2NL	+	FALSE
chr1	6283306	T	C	0.00275	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	26451672	T	C	0.00912	PDIK1L	+	FALSE
chr1	120695554	G	A	0.00492		.	FALSE
chr1	245017464	T	A	0.00314	HNRNPU,SNORA100	-	FALSE
chr1	32373854	A	T	0.00096	PTP4A2	-	FALSE
chr1	68168152	C	T	0.00258	GNG12	-	FALSE
chr3	52027636	C	T	0.00965		.	FALSE
chr17	61502463	T	G	0.00370	TANC2	+	FALSE
chr1	55207982	C	A	0.00063	MROH7-TTC4,TTC4	+	FALSE
chr1	12677547	G	A	0.00543	DHRS3	-	FALSE	(A)n	SINE,Alu
chr3	48787042	T	C	1.97898E-05	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	113212974	A	T	0.00424	CAPZA1	+	FALSE
chr1	148556107	A	T	0.00288		.	FALSE
chr1	93297609	C	T	8.96972E-06	RPL5	+	FALSE
chr7	143003525	T	A	0.00064	CASP2	+	FALSE	AluY	SINE,Alu
chr1	14604	A	G	0.00304	WASH7P	-	FALSE
chr1	1650832	A	G	0.00407	CDK11B,CDK11A	-	FALSE
chr1	1251841	T	C	0.00222	CPSF3L	-	TRUE	AluSq2	SINE,Alu
chr3	11596302	T	C	0.00110	ATG7	+	FALSE
chr4	39780672	C	A	0.00743	UBE2K	+	FALSE
chr14	74526154	T	C	0.00126	BBOF1,ALDH6A1	+,-	FALSE	AluSp	SINE,Alu
chr1	22852880	G	C	0.00247	ZBTB40	+	FALSE
chrX	3526659	C	G	0.00188	PRKX	-	FALSE	(AC)n	SINE,Alu
chr9	80888613	A	G	0.00904		.	FALSE	AluSx	SINE,Alu
chr1	156565056	C	T	0.00498	GPATCH4	-	FALSE
chr5	38904482	G	A	0.00048	OSMR	+	FALSE
chr1	225706943	C	T	0.00229	ENAH	-	FALSE
chr5	52388460	A	T	0.00034	ITGA2	+	FALSE
chr4	2940364	T	C	0.00718	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr2	37327702	T	C	0.00179		.	FALSE
chr4	1388115	C	G	0.00682	CRIPAK	+	FALSE	L1MB4	SINE,Alu
chr2	106510201	C	A	0.00638	NCK2	+	FALSE
chr2	129024313	A	G	0.00612	HS6ST1	-	FALSE
chr15	90820068	A	G	0.00194		.	FALSE	AluY	SINE,Alu
chr19	19793795	A	G	0.00030	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr3	51738256	A	G	0.00312	TEX264	+	FALSE
chr8	42043493	G	A	0.00045	PLAT	-	FALSE	MLT2C1	SINE,Alu
chr1	155106550	A	G	0.00015	EFNA1	+	FALSE
chr1	179326847	A	G	0.00031	SOAT1	+	TRUE	AluJo	SINE,Alu
chr2	206986233	T	C	0.00109		.	FALSE	AluSz	SINE,Alu
chr1	85785548	C	T	0.00353	DDAH1	-	FALSE
chr5	130537761	A	G	0.00126	LYRM7	+	FALSE	AluJb	SINE,Alu
chr5	93018884	A	C	0.00030	FAM172A	-	FALSE	(TCA)n	SINE,Alu
chr3	10192672	G	A	5.82875E-07	VHL	+	FALSE	AluSx1	SINE,Alu
chr3	142772593	G	A	0.00135	U2SURP	+	FALSE
chr11	33694645	T	C	2.61039E-05	KIAA1549L	+	FALSE
chr3	195395402	C	A	0.00066	SDHAP2	+	FALSE
chr16	71765443	C	T	0.00223	AP1G1	-	FALSE
chr6	143832707	G	A	0.00418	FUCA2	-	FALSE	(GCA)n	SINE,Alu
chr15	50648940	C	T	0.00114	GABPB1-AS1	+	FALSE
chr1	230974329	A	G	0.00355	C1orf198	-	FALSE
chr1	6582221	T	C	0.00169	NOL9	-	TRUE	AluSq4	SINE,Alu
chr2	37331077	T	C	0.00937		.	FALSE	AluSx1	SINE,Alu
chr1	1647893	C	T	0.00509	CDK11B,CDK11A	-	FALSE
chr1	158067060	T	A	0.00114	KIRREL	+	FALSE
chr1	16945227	G	T	0.00090	CROCCP2	-	FALSE
chr11	769459	T	C	0.00082	PDDC1	-	TRUE	AluSq2	SINE,Alu
chr6	36894340	A	G	0.00575	C6orf89	+	FALSE	GA-rich	SINE,Alu
chr5	41917697	A	T	0.00051	C5orf51	+	FALSE
chr1	161931628	G	C	0.00476	ATF6	+	FALSE
chr2	37327662	T	C	0.00058		.	FALSE
chr1	40219280	T	C	0.00025	PPIE	+	FALSE
chr3	157161198	A	T	0.00486	VEPH1,PTX3	+,-	FALSE
chr6	38670804	G	C	0.00400	GLO1	-	FALSE
chr1	3546128	A	G	0.00213	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr2	33007710	C	T	0.00743	TTC27	+	FALSE
chr1	226352498	T	G	0.00636	ACBD3	-	FALSE
chr1	36603290	C	T	0.00948	TRAPPC3	-	FALSE
chr1	6659505	G	A	0.00405	KLHL21	-	FALSE
chr1	145282799	G	A	0.00882	NBPF20,NOTCH2NL	+	FALSE
chrM	2619	A	T	0.00012	RNR2	+	FALSE	LSU-rRNA_Hsa	SINE,Alu
chr7	94060360	T	G	0.00014	COL1A2	+	FALSE
chr1	28836975	A	G	0.00023	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr1	145512944	A	G	0.00110	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr9	124103030	G	A	0.00193	STOM	-	FALSE	AluSq2	SINE,Alu
chr1	118167515	C	T	2.81283E-05	FAM46C	+	FALSE
chr1	142688597	C	T	0.00605		.	FALSE
chr1	226172221	T	C	0.00030	SDE2	-	FALSE	L1MEf	SINE,Alu
chr1	19665557	A	C	0.00365	CAPZB	-	FALSE
chr1	53711735	G	C	0.00884	LRP8	-	FALSE
chr1	179832748	G	C	7.50400E-12	TOR1AIP2	-	FALSE	FLAM_C	SINE,Alu
chr1	76227022	A	G	0.00035	ACADM	+	FALSE
chr1	1662547	T	C	0.00556	SLC35E2	-	TRUE	AluY	SINE,Alu
chr1	78483452	C	T	0.00739	DNAJB4	+	FALSE	L1MB7	SINE,Alu
chr1	26608008	T	A	0.00496	SH3BGRL3	+	FALSE
chr17	5288084	T	A	0.00232	RABEP1	+	FALSE
chr3	156258230	T	C	0.00011	SSR3	-	TRUE	AluYk3	SINE,Alu
chrX	77084007	T	C	0.00141	MAGT1	-	TRUE	AluSz	SINE,Alu
chr2	223807817	A	C	0.00991	ACSL3	+	FALSE	(A)n	SINE,Alu
chr1	20976211	T	C	0.00833	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr5	134086670	C	A	0.00585	CAMLG	+	FALSE
chr2	71411977	T	A	0.00468	PAIP2B	-	FALSE
chr5	74072648	T	A	0.00036	NSA2	+	FALSE
chr5	96110613	T	A	0.00993	ERAP1	-	FALSE
chr1	36067760	T	C	0.00052	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	26143725	A	T	0.00116	SEPN1	+	FALSE	AluSx	SINE,Alu
chr3	15483830	A	G	3.44106E-05	EAF1	+	FALSE
chr19	11256725	T	C	7.46879E-09	SPC24	-	TRUE	AluJr4	SINE,Alu
chr5	137087812	A	C	0.00607	HNRNPA0	-	FALSE
chr1	138156	G	T	0.00048	LOC729737	-	FALSE
chr1	35644503	T	A	0.00551	SFPQ	-	FALSE
chr18	6986227	G	A	3.73397E-05	LAMA1	-	FALSE
chr2	204055625	G	A	0.00426	NBEAL1	+	FALSE
chr5	122359500	A	C	0.00358	PPIC	-	FALSE	(AC)n	SINE,Alu
chr1	45244413	T	A	0.00750		.	FALSE
chr2	30381505	T	C	0.00820	YPEL5	+	FALSE

RBP	HSPD1
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR243IGA
Platform	HiSeq
Pubmed ID	32252787

HSPD1 - Target Gene Network