RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	149913731	T	C	0.00198	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr17	26955330	A	C	0.00291	KIAA0100	-	FALSE
chr12	9395329	G	A	0.00814	LINC00987	+	FALSE
chr5	6633042	C	T	0.00348	NSUN2	-	FALSE
chr8	133859871	T	A	0.00027	PHF20L1	+	FALSE
chr1	10519048	T	C	0.00637		.	FALSE	AluSx3	SINE,Alu
chr1	145100851	A	G	0.00066	NBPF20,SEC22B	+	FALSE	AluSg4	SINE,Alu
chr2	9770610	A	G	0.00466	YWHAQ	-	FALSE
chr2	37331855	C	T	0.00965		.	FALSE	L1MC4	SINE,Alu
chr1	19543364	T	C	0.00447	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	75888160	A	C	0.00368	MRPL19	+	FALSE	L1MB4	SINE,Alu
chr1	114443475	A	G	0.00538	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	19578192	G	A	0.00778	MRTO4	+	FALSE
chr7	20178562	T	C	1.84789E-06	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chr16	58054472	T	C	0.00530	USB1	+	FALSE
chr1	197125427	T	C	0.00331	ZBTB41	-	FALSE
chr18	19445881	T	A	0.00224	MIB1	+	FALSE
chr1	16944809	G	C	9.47535E-05	CROCCP2	-	FALSE
chr3	17202334	A	C	0.00770	TBC1D5	-	FALSE
chr1	28825337	A	G	0.00313	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	16909129	T	C	0.00131	NBPF1	-	FALSE
chr3	195243012	A	C	0.00128	PPP1R2	-	FALSE
chr6	29704336	G	A	0.00207		.	FALSE	L1ME3A	SINE,Alu
chr8	71550832	T	C	0.00725	LACTB2-AS1,LACTB2	+,-	FALSE
chr4	165998692	T	C	0.00568	TMEM192	-	TRUE	AluSg	SINE,Alu
chr1	27992823	A	C	0.00087	IFI6	-	FALSE	FAM	SINE,Alu
chr1	144813815	A	G	2.28281E-05	NBPF20,NBPF9	+	FALSE
chr2	220416942	G	C	0.00100	OBSL1	-	FALSE
chr19	9673276	C	A	0.00085		.	FALSE	Tigger1	SINE,Alu
chr2	37331531	T	C	0.00063		.	FALSE	AluJb	SINE,Alu
chr1	36024788	C	T	5.60663E-14	NCDN	+	FALSE
chr1	120163247	T	C	0.00010	ZNF697	-	FALSE
chr1	228107281	G	A	0.00833		.	FALSE
chr1	32801724	T	G	0.00816	MARCKSL1	-	FALSE
chr1	16892275	C	T	0.00230	NBPF1	-	FALSE
chr1	150337289	G	T	0.00298	RPRD2	+	FALSE
chr3	197612370	A	G	0.00157		.	FALSE	AluSp	SINE,Alu
chr1	145369589	T	C	0.00696	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	119693495	A	G	0.00996	LOC101929147	+	TRUE	AluSx	SINE,Alu
chr1	153907297	C	T	3.91411E-05	DENND4B	-	FALSE	(CTG)n	SINE,Alu
chr3	33481400	G	C	1.12603E-05	UBP1	-	FALSE
chr1	20519965	G	T	0.00011	UBXN10	+	FALSE
chr6	34845648	T	C	0.00790	TAF11	-	FALSE
chr1	1419690	A	G	0.00464	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr4	108832727	T	C	0.00071	SGMS2,LOC101929595	+,-	FALSE
chr1	85785548	C	T	0.00220	DDAH1	-	FALSE
chr18	24127008	T	G	0.00800	KCTD1	-	FALSE	(TGG)n	SINE,Alu
chr15	74319092	A	G	0.00029	PML	+	TRUE	AluSz6	SINE,Alu
chr2	61764922	G	C	0.00679	XPO1	-	FALSE
chr2	86248309	T	C	0.00808	LOC90784	-	FALSE
chr1	10517613	T	C	0.00375		.	FALSE	AluSx1	SINE,Alu
chr1	11347150	C	A	0.00366	UBIAD1	+	FALSE
chr9	115447518	T	C	0.00084	INIP	-	TRUE	AluJb	SINE,Alu
chr1	10516656	C	T	0.00808		.	FALSE
chr3	10192811	A	G	0.00149	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	114940209	G	T	0.00177	TRIM33	-	FALSE	(T)n	SINE,Alu
chr4	2940397	T	C	0.00010	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	78414329	G	A	0.00785	FUBP1	-	FALSE	A-rich	SINE,Alu
chr1	26765033	A	G	0.00324	DHDDS	+	TRUE	AluJr	SINE,Alu
chr1	138156	G	T	0.00048	LOC729737	-	FALSE
chr1	31905884	G	A	2.48126E-05	SERINC2	+	FALSE
chr1	41487492	C	G	0.00221	SLFNL1-AS1	+	FALSE
chr2	55255313	T	A	0.00675	RTN4	-	FALSE
chr1	92975262	C	A	0.00238	EVI5	-	FALSE
chr7	5567112	C	T	0.00000	ACTB	-	FALSE
chr1	10042988	A	G	0.00359	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	46075724	A	G	0.00990	NASP	+	TRUE	AluSx4	SINE,Alu
chr2	191556847	G	T	9.96724E-06	NAB1	+	FALSE
chr2	109383604	G	A	0.00331	RANBP2	+	FALSE
chr1	3545189	T	G	0.00027	TPRG1L	+	FALSE
chr5	9546451	G	A	0.00030	SNHG18	+	FALSE
chr5	121362874	A	G	0.00022	SRFBP1	+	TRUE	FRAM	SINE,Alu
chr8	128752685	G	A	2.94991E-09	MYC	+	FALSE
chr1	207942336	A	G	0.00586	CD46	+	TRUE	AluSg4	SINE,Alu
chr6	134492485	C	T	0.00245	SGK1	-	FALSE
chr10	16554732	T	A	0.00706	PTER	+	FALSE
chr3	137787192	T	C	0.00764	DZIP1L	-	FALSE
chr1	37958451	C	G	0.00882	MEAF6	-	FALSE	MER5B	SINE,Alu
chr15	91044385	G	T	0.00440	IQGAP1	+	FALSE
chr1	100550370	T	A	0.00743	SASS6	-	FALSE
chr3	98299365	T	G	0.00133	CPOX	-	FALSE
chr5	79923912	T	C	0.00037	DHFR	-	TRUE	AluSp	SINE,Alu
chr1	33149373	A	G	0.00239	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr2	128951904	A	G	0.00444	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr4	17804847	T	C	0.00512	DCAF16	-	TRUE	AluSx	SINE,Alu
chr1	230415244	T	C	0.00780	GALNT2	+	FALSE
chr1	21810587	A	G	0.00563	NBPF3	+	FALSE
chr20	25428724	A	G	0.00789	GINS1	+	TRUE	AluJb	SINE,Alu
chr2	17965390	T	C	0.00713	GEN1	+	FALSE	L1M4	SINE,Alu
chr1	109605648	A	G	0.00033		.	FALSE	AluY	SINE,Alu
chr1	32688036	A	T	0.00265	EIF3I	+	FALSE
chr4	57326262	A	G	2.33397E-05	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	10438006	A	T	6.81521E-05	KIF1B	+	FALSE	AluSg	SINE,Alu
chr1	1594197	C	T	0.00097	CDK11B,SLC35E2B	-	FALSE
chr1	31905886	C	A	0.00273	SERINC2	+	FALSE
chr19	23542304	T	C	2.38814E-05	ZNF91	-	TRUE	AluY	SINE,Alu
chr1	118066459	A	G	1.18146E-05	MAN1A2	+	FALSE
chr1	6681544	T	C	0.00031	PHF13	+	FALSE
chr9	116139063	G	C	0.00321	HDHD3	-	FALSE
chr1	10517653	T	C	0.00475		.	FALSE	AluSx1	SINE,Alu
chr1	19543457	T	C	0.00718	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	16932912	T	C	0.00525	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr9	139698779	C	G	0.00106	CCDC183,CCDC183-AS1	+,-	FALSE	L2b	SINE,Alu
chr6	143661166	A	C	0.00536	AIG1	+	FALSE
chr7	64435683	T	A	0.00239	ZNF117	-	FALSE
chr1	168215575	G	A	0.00688	ANKRD36BP1	-	FALSE
chr1	36068237	T	C	0.00974	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	201774641	T	C	0.00928		.	FALSE	AluJr4	SINE,Alu
chr3	73112378	A	G	0.00261	PPP4R2,EBLN2	+	FALSE
chr4	761850	T	C	0.00026	PCGF3	+	FALSE
chr1	89447839	C	G	0.00589	KYAT3,RBMXL1	-	FALSE
chr1	3545184	G	T	0.00347	TPRG1L	+	FALSE
chr11	67782827	G	A	0.00163	ALDH3B1	+	FALSE
chr1	46075604	A	G	0.00365	NASP	+	TRUE	AluSx4	SINE,Alu
chr10	17275583	T	C	0.00374	VIM	+	FALSE
chr1	218617066	A	T	0.00036	TGFB2-OT1,TGFB2	+	FALSE
chr1	46075715	A	G	0.00401	NASP	+	TRUE	AluSx4	SINE,Alu
chr3	10193683	T	G	0.00681	VHL	+	FALSE	AluJr	SINE,Alu
chr1	45975574	A	G	0.00050	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr6	17557412	C	T	0.00986	CAP2	+	FALSE
chr2	28002602	C	A	0.00037	MRPL33	+	FALSE
chr12	125511942	A	G	0.00015	THRIL	-	FALSE	AluSx1	SINE,Alu
chr1	202848587	G	A	2.63176E-05	RABIF	-	FALSE
chr1	36067752	T	C	1.27861E-08	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	156259295	T	C	0.00039	SSR3	-	TRUE	AluSq2	SINE,Alu
chr1	6583270	C	G	0.00529	NOL9	-	FALSE
chr1	10517567	T	C	0.00262		.	FALSE	AluSx1	SINE,Alu
chr6	150046603	T	C	0.00730	NUP43	-	TRUE	AluSq2	SINE,Alu
chr10	116603648	A	G	0.00267	FAM160B1	+	FALSE
chr4	57796757	G	A	0.00011	REST	+	FALSE
chr1	117645998	A	G	0.00434		.	FALSE
chr22	39259540	G	A	0.00493	CBX6	-	FALSE
chr1	109746728	A	G	0.00171	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	179044216	A	G	0.00277	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	36068369	T	C	0.00207	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	78414310	C	A	0.00131	FUBP1	-	FALSE
chr1	46076481	A	G	0.00144	NASP	+	TRUE	AluSx	SINE,Alu
chr1	10521103	T	C	0.00788	DFFA	-	TRUE	AluY	SINE,Alu
chr1	10518797	T	C	0.00421		.	FALSE	AluSx1	SINE,Alu
chr1	33961147	T	G	0.00196	ZSCAN20	+	FALSE
chr16	58054477	T	C	0.00180	USB1	+	FALSE
chr3	10356760	G	A	0.00951	SEC13	-	FALSE	MIRb	SINE,Alu
chr3	42636141	G	A	0.00224	SEC22C,SS18L2	+,-	FALSE
chr1	225707042	T	C	4.11654E-05	ENAH	-	FALSE
chr1	93617404	T	G	0.00265	TMED5	-	FALSE
chr1	46075715	A	G	0.00842	NASP	+	TRUE	AluSx4	SINE,Alu
chr4	128757415	A	G	0.00367		.	FALSE	AluY	SINE,Alu
chr3	23958355	C	T	0.00997	NKIRAS1,RPL15	+,-	FALSE
chr15	90819594	A	G	9.20455E-05		.	FALSE	AluSx	SINE,Alu
chr1	116237496	T	A	0.00934	VANGL1	+	FALSE
chr1	231154921	C	T	0.00773	FAM89A	-	FALSE	(T)n	SINE,Alu
chr1	87379494	A	T	0.00364	SEP15	-	FALSE
chr9	33039686	G	A	0.00542	DNAJA1	+	FALSE
chr14	67852067	A	G	2.77652E-05	EIF2S1	+	TRUE	AluJb	SINE,Alu
chr4	2940164	T	C	0.00115	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr3	46007823	G	T	6.71801E-06	FYCO1	-	FALSE
chr6	71298815	T	A	0.00287		.	FALSE
chr1	45476889	C	G	0.00969	HECTD3	-	FALSE
chr2	37331134	T	C	0.00042		.	FALSE	AluSx1	SINE,Alu
chr9	80333361	C	T	0.00382	GNAQ	-	FALSE
chr14	74526976	T	C	1.13179E-06	BBOF1,ALDH6A1	+,-	FALSE	AluJo	SINE,Alu
chr6	52269046	C	G	0.00338	PAQR8	+	FALSE
chr16	70695982	T	C	0.00926	MTSS1L	-	FALSE
chr1	16933628	A	G	0.00430	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr3	160213317	T	A	0.00208	KPNA4	-	FALSE
chr1	19542310	T	C	2.12437E-06	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr4	17629377	A	G	0.00890		.	FALSE	AluSx3	SINE,Alu
chr1	150548877	C	G	0.00071	MCL1	-	FALSE
chr1	52306066	T	A	0.00154	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr1	200521412	G	A	0.00588	KIF14	-	FALSE
chr8	25272447	A	T	0.00770	DOCK5	+	FALSE
chr2	86249961	T	C	0.00173	LOC90784	-	TRUE	AluJr	SINE,Alu
chr1	16893691	C	A	0.00764	NBPF1	-	FALSE
chr5	175811091	G	A	0.00592	NOP16	-	FALSE
chr2	201774185	T	C	0.00921		.	FALSE	AluSz	SINE,Alu
chr1	19585553	A	G	0.00558	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr1	45976723	T	C	0.00366	MMACHC,PRDX1	+,-	FALSE
chr1	100548868	T	C	8.06321E-05	MFSD14A	+	FALSE
chr10	75008817	T	C	1.29877E-10	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr21	34730010	A	G	0.00518	IFNAR1	+	TRUE	AluSg7	SINE,Alu
chr19	11257634	T	C	0.00237	SPC24	-	TRUE	AluSp	SINE,Alu
chr1	25169634	A	G	0.00843	CLIC4	+	FALSE
chr3	14986447	T	C	2.03372E-08	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr12	125511961	A	G	1.08093E-06	THRIL	-	FALSE	AluSx1	SINE,Alu
chr4	39552183	T	C	0.00479	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr1	1419775	A	G	0.00090	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	10520154	T	C	0.00018		.	FALSE	AluSx	SINE,Alu
chr3	44485914	T	C	0.00920	ZNF445	-	FALSE	MIRb	SINE,Alu
chr1	56961756	A	G	0.00682	PLPP3	-	FALSE
chr4	155457049	T	A	0.00370	PLRG1	-	FALSE	L2d2	SINE,Alu
chr1	9328094	A	G	0.00107	H6PD	+	TRUE	AluJr	SINE,Alu
chr3	10192652	A	G	0.00155	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	10519048	T	C	0.00728		.	FALSE	AluSx3	SINE,Alu
chr1	85715978	C	G	0.00815	C1orf52	-	FALSE
chr3	22424405	T	A	0.00766		.	FALSE
chr3	183889337	A	T	3.46641E-05	DVL3	+	FALSE
chr1	40539201	A	G	0.00028	PPT1	-	FALSE
chr3	112720120	T	G	0.00573	GTPBP8	+	FALSE
chr2	37330534	T	C	6.35640E-05		.	FALSE	AluSq2	SINE,Alu
chr1	85020487	C	T	0.00120	SPATA1,CTBS	+,-	FALSE
chr10	51613297	A	G	0.00347	TIMM23B,TIMM23	+,-	FALSE
chr7	6048973	C	A	8.39369E-05	AIMP2	+	FALSE
chr3	184429718	A	G	0.00914	MAGEF1	-	FALSE
chr1	6283260	T	C	0.00402	ICMT	-	TRUE	AluSx3	SINE,Alu
chr3	196660052	G	A	0.00200	SENP5	+	FALSE	AluSz	SINE,Alu
chr19	42376692	A	G	0.00540		.	FALSE	AluSp	SINE,Alu
chr8	37613106	T	C	0.00626	ERLIN2	+	FALSE
chr5	37291617	T	C	0.00022		.	FALSE	AluSx3	SINE,Alu
chr1	27992825	G	A	0.00012	IFI6	-	FALSE
chr1	16890484	G	C	0.00704	NBPF1	-	FALSE
chr1	205687358	T	C	0.00432	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr1	44402565	G	A	0.00010	ARTN	+	FALSE
chr2	8823941	G	A	0.00053	ID2	+	FALSE
chr7	12675713	T	C	0.00363	SCIN	+	FALSE
chr4	17804879	T	C	0.00863	DCAF16	-	TRUE	AluSx	SINE,Alu
chr3	56654248	T	G	3.99921E-06	CCDC66,FAM208A	+,-	FALSE
chr7	2278515	T	C	0.00937	MRM2	-	TRUE	AluSx1	SINE,Alu
chr1	35817025	T	A	0.00987	ZMYM4	+	FALSE
chr1	1231173	C	T	1.33148E-07	ACAP3	-	FALSE
chr4	17633798	A	G	0.00053	FAM184B	-	FALSE	AluSz	SINE,Alu
chr7	6202695	A	C	0.00013	CYTH3	-	FALSE
chr4	95173779	T	C	0.00771	SMARCAD1	+	FALSE
chr5	95222277	C	T	0.00599	ELL2	-	FALSE
chr1	25644747	T	C	0.00972	RSRP1,RHD	+,-	FALSE	AluSx1	SINE,Alu
chr2	9629954	T	C	0.00308	ADAM17	-	FALSE
chr7	5568366	A	G	0.00400	ACTB	-	FALSE
chr17	49042216	T	C	0.00746	SPAG9	-	TRUE	AluJb	SINE,Alu
chr1	114438951	A	G	0.00012	AP4B1-AS1,AP4B1	+,-	FALSE
chr1	16889041	C	T	0.00429	NBPF1	-	FALSE
chr1	32953296	A	G	5.26589E-05	ZBTB8B	+	TRUE	AluSz	SINE,Alu
chr1	121133733	G	A	0.00552	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr1	119427687	G	C	0.00823	TBX15	-	FALSE
chr1	167396055	T	A	0.00031	POU2F1	+	FALSE
chr5	125961623	A	G	6.78430E-09	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	36522603	A	G	0.00012		.	FALSE	AluSc	SINE,Alu
chr1	116609185	G	A	0.00187	SLC22A15	+	FALSE
chr1	28833494	G	A	0.00122	SNHG3,RCC1	+	FALSE
chr1	6283348	T	C	0.00082	ICMT	-	TRUE	AluSx3	SINE,Alu
chr4	119555142	A	G	4.95460E-05	LOC729218	+	FALSE
chr14	63841401	G	C	0.00014	PPP2R5E	-	FALSE
chr2	128064446	G	T	0.00066	MAP3K2	-	FALSE	(GT)n	SINE,Alu
chr2	9629290	T	G	0.00180	ADAM17	-	FALSE	(TGT)n	SINE,Alu
chr1	26449340	G	A	0.00711	PDIK1L	+	FALSE
chr1	145511962	A	G	0.00091	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	16893686	G	C	0.00171	NBPF1	-	FALSE
chr1	28835937	A	G	0.00121	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr11	4159457	A	G	0.00764	RRM1	+	FALSE
chr1	10520331	C	T	0.00280		.	FALSE	AluSx1	SINE,Alu
chr2	238499528	T	G	0.00332	RAB17	-	FALSE
chr2	10942687	C	T	0.00082	PDIA6	-	FALSE
chr3	127790249	A	G	0.00276	RUVBL1,SEC61A1	+,-	FALSE
chr1	160920966	C	T	0.00980	ITLN2	-	FALSE
chr5	177576460	C	T	0.00635		.	FALSE
chr1	16932144	A	C	7.50683E-06	NBPF1	-	FALSE
chr1	40722795	G	A	9.35494E-07		.	FALSE	Charlie2a	SINE,Alu
chr17	31258352	G	A	0.00417	TMEM98	+	FALSE
chr14	90509582	T	C	0.00017	TDP1	+	FALSE
chr2	85548074	T	C	0.00428	TGOLN2	-	FALSE
chr3	197611291	A	G	0.00095		.	FALSE	AluSx1	SINE,Alu
chr2	74686329	C	T	0.00640	INO80B-WBP1,WBP1	+	FALSE
chr1	144912233	C	T	0.00066	NBPF20,PDE4DIP	+,-	FALSE
chr6	42856064	A	G	0.00019	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	7737791	A	C	0.00017	CAMTA1	+	FALSE
chr1	33068221	A	G	0.00448	ZBTB8A	+	TRUE	AluY	SINE,Alu
chr3	56654600	C	G	0.00490	CCDC66,FAM208A	+,-	FALSE
chr1	6582470	T	C	0.00522	NOL9	-	TRUE	AluSx1	SINE,Alu

RBP	DROSHA
Knock-Method	shRNA
RBP Family	Ribonucleas_3_3
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR624XHG
Platform	HiSeq
Pubmed ID	32252787

DROSHA - Target Gene Network