RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr15	41590287	A	G	0.00319	OIP5-AS1	+	FALSE
chr1	95658344	G	A	0.00100	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr1	20978451	T	C	0.00193	PINK1-AS,DDOST	-	TRUE	AluY	SINE,Alu
chr2	24494638	T	G	0.00507	ITSN2	-	FALSE	(TATCCT)n	SINE,Alu
chr3	148748380	T	C	0.00240	HLTF	-	FALSE
chr1	52306066	T	A	0.00154	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr2	242512159	A	G	0.00243	BOK	+	FALSE
chr1	9160989	T	C	0.00092		.	FALSE	AluJb	SINE,Alu
chr14	50792837	A	G	0.00550	ATP5S	+	TRUE	AluSx	SINE,Alu
chr1	116237273	A	G	0.00309	VANGL1	+	FALSE
chr1	115248084	C	T	0.00171	NRAS	-	FALSE
chr7	100804430	C	T	0.00629	AP1S1	+	FALSE
chr12	56510697	G	A	0.00055	RPL41	+	FALSE
chr1	43897496	G	A	0.00481	SZT2	+	FALSE
chr1	179829584	T	C	0.00204	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr1	26774224	A	G	0.00295	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr1	108678732	T	C	0.00396	SLC25A24	-	FALSE
chr19	11560483	A	G	0.00775	PRKCSH	+	TRUE	AluSx	SINE,Alu
chr1	25894472	C	G	0.00594	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr3	113370193	C	T	4.09251E-05	USF3	-	FALSE	UCON34	SINE,Alu
chr4	79832870	A	T	0.00655	BMP2K	+	FALSE
chr16	75479910	T	C	0.00026	TMEM170A	-	TRUE	AluSg4	SINE,Alu
chr1	144481235	A	G	1.18230E-05	NBPF20	+	FALSE
chr1	157092835	G	A	0.00595		.	FALSE
chr1	1017747	A	G	0.00142	C1orf159	-	FALSE
chr2	176790393	C	T	0.00282	LNPK	-	FALSE	AluSp	SINE,Alu
chr1	9162348	T	C	0.00359		.	FALSE	AluSx	SINE,Alu
chr1	46075777	A	G	0.00268	NASP	+	TRUE	AluSx4	SINE,Alu
chr9	132268442	A	G	0.00642	LINC00963	+	TRUE	AluJb	SINE,Alu
chr12	120898658	A	G	0.00372	GATC	+	TRUE	AluY	SINE,Alu
chr1	9160996	T	C	0.00023		.	FALSE	AluJb	SINE,Alu
chr17	65335362	T	C	3.02375E-05	PSMD12	-	TRUE	AluSx	SINE,Alu
chr1	145512073	A	G	0.00056	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr5	149829068	C	T	0.00038	RPS14	-	FALSE
chrX	3523050	C	A	0.00043	PRKX	-	FALSE
chr1	3545192	C	G	0.00011	TPRG1L	+	FALSE
chr8	95804615	A	G	0.00968	DPY19L4	+	TRUE	AluSq2	SINE,Alu
chr1	200589813	C	A	0.00034	KIF14	-	FALSE
chr1	201846617	A	C	0.00380	IPO9	+	FALSE	(CA)n	SINE,Alu
chr1	207942336	A	G	0.00586	CD46	+	TRUE	AluSg4	SINE,Alu
chr3	148748198	G	A	3.62985E-05	HLTF	-	FALSE
chr2	201774341	T	C	0.00073		.	FALSE	AluSz	SINE,Alu
chr1	40214296	A	G	0.00485	PPIE	+	TRUE	AluSq2	SINE,Alu
chr1	67874731	T	C	0.00145	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	53289686	A	G	0.00460	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	37948912	C	T	0.00084	ZC3H12A	+	FALSE
chr1	45975574	A	G	0.00299	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	145689568	A	G	0.00157	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr2	67631831	G	A	0.00423	ETAA1	+	FALSE
chr3	181430141	G	C	0.00086	SOX2-OT,SOX2	+	FALSE
chr1	9328242	A	G	5.63395E-05	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	16575726	T	C	0.00916	FBXO42	-	FALSE
chr1	36068281	T	C	0.00331	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	120164252	G	A	0.00139	ZNF697	-	FALSE
chr5	109204057	T	A	0.00614	MAN2A1	+	FALSE
chr16	58054472	T	C	0.00530	USB1	+	FALSE
chr8	26435508	C	T	0.00106	DPYSL2	+	FALSE	(TC)n	SINE,Alu
chr1	28661657	A	G	0.00910	MED18	+	TRUE	AluSg	SINE,Alu
chr1	95392593	C	T	0.00173	CNN3	-	FALSE	(GGCGCG)n	SINE,Alu
chr3	112320485	T	C	0.00107	LINC01279	-	TRUE	AluJb	SINE,Alu
chr1	206669958	G	A	0.00347	IKBKE	+	FALSE
chr1	78414334	C	A	0.00702	FUBP1	-	FALSE	A-rich	SINE,Alu
chr1	144604425	C	T	0.00299	NBPF20	+	FALSE
chr1	145513031	A	G	0.00713	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	32373858	A	T	0.00100	PTP4A2	-	FALSE
chr2	121979980	G	A	0.00525	TFCP2L1	-	FALSE	L1MB8	SINE,Alu
chr1	148251079	T	C	0.00378	NBPF8,NBPF14,NBPF9	-	FALSE	L1MC4	SINE,Alu
chr1	38326661	T	C	0.00023	INPP5B	-	TRUE	AluJr	SINE,Alu
chr10	28971535	T	A	0.00169	BAMBI	+	FALSE
chr1	19934930	T	C	0.00026	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr1	10520487	T	C	0.00710		.	FALSE	AluSx1	SINE,Alu
chr2	113334178	A	T	0.00654	POLR1B	+	FALSE	L1MA10	SINE,Alu
chr1	144521099	A	G	0.00196	NBPF20	+	FALSE
chr1	45976723	T	C	0.00733	MMACHC,PRDX1	+,-	FALSE
chr1	118069696	T	C	0.00922		.	FALSE
chr1	109746825	A	G	0.00094	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr9	14764	C	T	0.00491	WASH1	-	FALSE
chr2	202038657	A	G	0.00354		.	FALSE	AluSx1	SINE,Alu
chr1	16918783	C	T	0.00252	NBPF1	-	FALSE
chr3	50686350	T	G	2.12445E-05	MAPKAPK3	+	FALSE
chr1	8045343	C	A	0.00162		.	FALSE
chr1	27879800	T	G	0.00473	AHDC1	-	FALSE	MIRb	SINE,Alu
chr1	54692334	T	C	0.00021	SSBP3	-	FALSE	(T)n	SINE,Alu
chr2	61705067	A	T	0.00084		.	FALSE
chr15	83826212	C	T	0.00278	HDGFRP3	-	FALSE	(CTT)n	SINE,Alu
chr6	150045852	T	C	0.00204	NUP43	-	TRUE	AluSq	SINE,Alu
chr6	32789807	C	T	0.00281		.	FALSE
chr4	1205680	C	A	0.00247	CTBP1-AS,CTBP1	+,-	FALSE
chr1	200521297	C	T	0.00133	KIF14	-	FALSE	(T)n	SINE,Alu
chr1	32661594	C	T	0.00725	TXLNA	+	FALSE	(T)n	SINE,Alu
chr2	98388810	G	T	6.24900E-05	TMEM131	-	FALSE
chr1	10519947	T	C	0.00184		.	FALSE	AluJr	SINE,Alu
chr1	10517653	T	C	0.00475		.	FALSE	AluSx1	SINE,Alu
chr15	41597559	A	G	0.00127		.	FALSE	AluSz6	SINE,Alu
chr4	128958127	A	G	0.00556	ABHD18	+	TRUE	AluSx3	SINE,Alu
chr1	71531596	A	G	0.00016	ZRANB2-AS1,ZRANB2	+,-	FALSE
chr1	115275398	T	G	0.00474	CSDE1	-	FALSE
chr1	45241587	G	A	0.00248	RPS8,SNORD55	+	FALSE
chr9	136335345	G	A	0.00490	CACFD1	+	FALSE	(TG)n	SINE,Alu
chr6	33377511	T	C	5.31992E-06		.	FALSE	(TG)n	SINE,Alu
chr15	38780594	C	T	0.00135	RASGRP1	-	FALSE
chr3	195243003	A	C	0.00301	PPP1R2	-	FALSE
chr1	110049203	G	C	0.00530		.	FALSE
chr1	9162932	A	T	0.00635		.	FALSE
chr2	8996326	C	T	0.00077	MBOAT2	-	FALSE
chr14	92629726	T	A	0.00787	CPSF2	+	FALSE
chr10	75008965	T	C	0.00017	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr7	286402	A	G	1.78989E-09	FAM20C	+	FALSE
chr1	150281017	A	G	0.00057	MRPS21	+	TRUE	AluSz	SINE,Alu
chr1	169768080	C	A	0.00980	C1orf112	+	FALSE
chr10	47221465	T	C	0.00201		.	FALSE	AluJb	SINE,Alu
chr1	3730332	T	C	6.29937E-05	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	113213009	A	T	0.00556	CAPZA1	+	FALSE
chr6	29704336	G	A	0.00207		.	FALSE	L1ME3A	SINE,Alu
chr5	115165591	T	C	0.00407	ATG12	-	TRUE	AluSq2	SINE,Alu
chr5	172385223	T	C	0.00796	LOC100268168	-	FALSE	AluSp	SINE,Alu
chr1	46269545	G	A	0.00378	MAST2	+	FALSE
chr1	46830430	G	A	0.00023	NSUN4	+	FALSE	LTR108a_Mam	SINE,Alu
chr2	37328082	T	C	0.00530		.	FALSE
chr1	11722350	C	A	0.00355	FBXO44	+	FALSE	OldhAT1	SINE,Alu
chr3	33893987	A	G	0.00123	PDCD6IP	+	FALSE
chr10	77157784	C	T	0.00027	ZNF503	-	FALSE	(T)n	SINE,Alu
chr1	227071525	C	T	0.00013	PSEN2	+	FALSE
chr2	206986245	T	C	0.00304		.	FALSE	AluSz	SINE,Alu
chr1	16889596	T	C	0.00905	NBPF1	-	TRUE
chr5	162902516	T	C	0.00226	HMMR	+	FALSE
chr8	145150065	G	C	0.00585	CYC1	+	FALSE
chr7	7918285	G	A	0.00255	UMAD1	+	FALSE
chr2	101587455	C	T	0.00178	NPAS2	+	FALSE
chr7	100739267	G	A	0.00654		.	FALSE	AluSx	SINE,Alu
chr3	52289709	G	C	4.88711E-11	WDR82	-	FALSE	MIR	SINE,Alu
chr5	68738649	A	T	0.00716		.	FALSE
chr3	53260620	T	G	0.00069	TKT	-	FALSE
chr1	40539203	A	T	0.00179	PPT1	-	FALSE
chr1	28865500	T	A	0.00509	RCC1	+	FALSE
chr1	36067886	T	C	0.00786	PSMB2	-	TRUE	AluSz	SINE,Alu
chr17	26672363	G	A	0.00599	TNFAIP1	+	FALSE
chr1	171561203	T	G	0.00075	PRRC2C	+	FALSE
chr8	30536583	T	C	0.00031	GSR	-	TRUE	AluSp	SINE,Alu
chr1	16910172	G	A	0.00023	NBPF1	-	FALSE
chr12	133298121	A	G	0.00026	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	145283718	G	A	0.00897	NBPF20,NOTCH2NL	+	FALSE
chr3	42266360	T	C	0.00279	TRAK1	+	FALSE
chr1	205737659	C	T	0.00024	RAB29	-	FALSE	AluSq2	SINE,Alu
chr1	6257826	T	C	0.00192	RPL22	-	FALSE
chr6	18264355	G	A	0.00872	DEK	-	FALSE
chr1	145369589	T	C	0.00046	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr2	37330517	T	C	0.00324		.	FALSE	AluSq2	SINE,Alu
chr1	230416412	C	G	0.00514	GALNT2	+	FALSE
chr1	55316322	A	G	0.00929	DHCR24	-	FALSE
chr1	16160968	C	T	0.00524	FLJ37453	-	FALSE	(T)n	SINE,Alu
chr1	10042988	A	G	3.32241E-06	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr6	150047370	T	C	0.00154	NUP43	-	TRUE	AluSc	SINE,Alu
chr8	30643549	G	C	0.00257	PPP2CB	-	FALSE
chr20	25427756	A	G	0.00396	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	10520154	T	C	0.00021		.	FALSE	AluSx	SINE,Alu
chr1	19499560	T	C	0.00226	UBR4	-	FALSE
chr3	169807548	T	C	0.00665	PHC3	-	TRUE	AluSx1	SINE,Alu
chr2	37429627	A	G	0.00330	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr3	56703746	A	C	0.00017	FAM208A	-	FALSE
chr1	153963246	G	A	6.32081E-05	RPS27	+	FALSE
chr2	132278176	T	G	0.00291	LOC150776	+	FALSE
chr13	52327020	G	A	0.00019	WDFY2	+	FALSE
chr5	175811093	A	G	0.00730	NOP16	-	FALSE
chr5	180663940	A	G	0.00331	RACK1	-	FALSE
chr10	865825	C	T	0.00088	LARP4B	-	FALSE
chr2	37331037	T	C	0.00036		.	FALSE	AluSx1	SINE,Alu
chrX	123045103	A	G	0.00996	XIAP	+	TRUE	AluSp	SINE,Alu
chr10	119766673	T	G	0.00082	RAB11FIP2	-	FALSE
chr12	133297934	A	G	9.03426E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr5	150578574	A	G	0.00447	CCDC69	-	FALSE
chr1	6694574	G	A	0.00983	THAP3,DNAJC11	+,-	FALSE
chr1	11141187	C	G	0.00819	EXOSC10	-	FALSE
chr1	16893721	A	C	0.00043	NBPF1	-	FALSE
chr1	53684924	A	G	0.00913	C1orf123	-	FALSE	L1MA5A	SINE,Alu
chr17	78226862	A	C	0.00590	SLC26A11	+	FALSE
chr12	21015760	G	A	0.00758	SLCO1B3	+	FALSE
chr1	16892135	G	A	0.00182	NBPF1	-	FALSE
chr3	160213317	T	A	0.00208	KPNA4	-	FALSE
chr1	65692498	T	C	0.00356	AK4	+	FALSE	(T)n	SINE,Alu
chr1	179326295	A	G	0.00035	SOAT1	+	TRUE
chr3	196670082	A	T	0.00261	NCBP2-AS2	+	FALSE
chr3	12624763	T	C	1.62214E-06	MKRN2	+	FALSE
chr1	160967890	T	C	0.00871	F11R	-	TRUE	AluSp	SINE,Alu
chr19	11945685	A	G	0.00016	ZNF440	+	TRUE	AluSp	SINE,Alu
chr5	125961647	A	G	1.53189E-07	PHAX	+	FALSE	AluSz6	SINE,Alu
chr6	74134075	T	C	0.00018		.	FALSE	AluY	SINE,Alu
chr11	93466866	G	T	0.00559	MIR1304	-	FALSE	AluJr	SINE,Alu
chr2	76672504	A	G	2.97414E-06		.	FALSE	7SK	SINE,Alu
chr17	65334828	T	C	0.00160	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	53289688	A	G	0.00069	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	19542455	T	C	0.00048	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	179989742	G	C	0.00019	CEP350	+	FALSE
chr19	11257634	T	C	0.00237	SPC24	-	TRUE	AluSp	SINE,Alu
chr2	68402796	C	T	0.00656	PNO1	+	FALSE
chr3	196080531	T	C	0.00952	UBXN7	-	TRUE	AluSx	SINE,Alu
chr1	154128839	G	T	0.00579	TPM3	-	FALSE
chr22	39259540	G	A	0.00493	CBX6	-	FALSE
chr1	10044367	A	G	5.42058E-05	NMNAT1	+	TRUE	AluSx1	SINE,Alu
chr1	43272842	A	T	5.93810E-05	SVBP	-	FALSE
chr1	91990450	A	T	0.00405	CDC7	+	FALSE	LFSINE_Vert	SINE,Alu
chr1	6283264	T	C	0.00095	ICMT	-	TRUE	AluSx3	SINE,Alu
chr15	91044379	T	G	0.00440	IQGAP1	+	FALSE
chr1	46751319	G	A	0.00085	LRRC41	-	FALSE
chr1	109475629	A	G	0.00835	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	94335333	G	T	0.00258	DNTTIP2	-	FALSE
chr1	145689537	A	G	0.00341	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	53679878	T	C	0.00348	C1orf123	-	FALSE
chr1	24086794	G	T	0.00028	TCEB3	+	FALSE	(T)n	SINE,Alu
chr2	242615532	C	A	0.00603	DTYMK	-	FALSE
chr9	131071533	T	C	0.00168	TRUB2	-	TRUE	FAM	SINE,Alu
chr1	109818158	C	T	0.00628	CELSR2	+	FALSE
chr1	990280	C	T	0.00243	AGRN	+	FALSE
chr7	75958151	G	C	0.00250	YWHAG	-	FALSE
chr4	95586224	A	G	0.00053	PDLIM5	+	FALSE
chr2	36704035	C	A	0.00012	CRIM1	+	FALSE
chr3	98299365	T	G	0.00133	CPOX	-	FALSE
chr4	37953902	T	C	0.00109	TBC1D1	+	FALSE
chr4	88061645	T	A	0.00049	AFF1	+	FALSE	(TATAT)n	SINE,Alu
chr1	116234083	T	A	0.00477	VANGL1	+	FALSE
chr6	42855200	A	G	2.13337E-05	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr8	73958240	G	A	0.00093	TERF1	+	FALSE
chr1	33148691	A	G	0.00207	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr2	132481529	C	T	0.00028	C2orf27A	+	FALSE
chr2	32535836	A	G	0.00163		.	FALSE	AluJb	SINE,Alu
chr7	75677504	C	T	0.00768	MDH2	+	FALSE
chr10	3208557	A	G	0.00128	PITRM1	-	FALSE
chr3	148863151	A	G	0.00062	HPS3	+	FALSE
chr1	27205634	T	C	0.00025		.	FALSE	FLAM_A	SINE,Alu
chr1	214527252	G	A	0.00830	PTPN14	-	FALSE	MADE2	SINE,Alu
chr2	178129405	C	T	0.00295	NFE2L2	-	FALSE	(CGG)n	SINE,Alu
chr1	7827697	G	C	0.00760	CAMTA1	+	FALSE
chr2	55459820	C	T	0.00714	RPS27A	+	FALSE
chr1	10520439	T	C	0.00293		.	FALSE	AluSx1	SINE,Alu
chr4	17804740	T	C	0.00015	DCAF16	-	TRUE	AluSx	SINE,Alu
chr1	27204447	T	C	0.00513		.	FALSE	AluSg7	SINE,Alu
chr2	32533707	A	G	0.00395		.	FALSE	AluSp	SINE,Alu
chr14	24884880	T	G	0.00491	NYNRIN	+	FALSE
chr9	124103030	G	A	0.00193	STOM	-	FALSE	AluSq2	SINE,Alu
chr1	145513051	A	G	0.00269	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr3	194369580	C	A	0.00042	LSG1	-	FALSE
chr1	16933583	T	C	0.00050	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	65692499	C	T	0.00516	AK4	+	FALSE	(T)n	SINE,Alu
chr3	93846831	G	A	0.00547		.	FALSE	AluSq2	SINE,Alu
chr1	47716043	A	G	0.00794	STIL	-	FALSE
chr1	33149373	A	G	0.00918	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr19	53914807	A	G	4.44644E-06	ZNF765	+	TRUE	AluSp	SINE,Alu
chr1	109475572	A	G	0.00096	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	38327700	T	C	0.00510	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr3	196079280	T	C	0.00614		.	FALSE	AluSx	SINE,Alu
chr18	212601	C	A	0.00189	USP14	+	FALSE	AluSz	SINE,Alu
chr2	70131584	G	A	0.00366	SNRNP27	+	FALSE
chr1	10517952	C	A	0.00341		.	FALSE
chr1	145441841	A	T	0.00636	NBPF20,NBPF10,TXNIP	+	FALSE
chr3	122283290	G	C	0.00029	DTX3L,PARP9	+,-	FALSE
chr1	46075663	A	G	0.00013	NASP	+	TRUE	AluSx4	SINE,Alu
chr3	49460407	C	T	0.00080	NICN1	-	FALSE	L2c	SINE,Alu

RBP	TIAL1
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR450VQO
Platform	HiSeq
Pubmed ID	32252787

TIAL1 - Target Gene Network