RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	27733305	A	C	0.00374	WASF2	-	FALSE
chr1	93826775	T	C	0.00172	DR1	+	FALSE
chr1	36067821	T	C	1.12344E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	160231910	A	T	0.00051	DCAF8	-	FALSE
chr1	10520202	T	C	0.00529		.	FALSE	AluSx	SINE,Alu
chr14	95572111	A	C	0.00409	DICER1	-	FALSE
chr1	1656557	T	C	0.00061	SLC35E2	-	TRUE	AluSz	SINE,Alu
chr1	222907790	C	T	0.00253	BROX	+	FALSE
chr14	95555551	C	T	0.00404	DICER1	-	FALSE
chr1	144821888	C	G	0.00093	NBPF20,NBPF9	+	FALSE
chr1	155851620	A	G	0.00066	SYT11	+	TRUE	AluSq2	SINE,Alu
chr1	204524866	A	G	0.00369	MDM4	+	TRUE	AluSx	SINE,Alu
chr2	217366919	A	G	0.00709		.	FALSE	AluSz6	SINE,Alu
chr5	74072638	G	A	0.00431	NSA2	+	FALSE
chr2	101622889	T	A	0.00022	RPL31	+	FALSE
chr19	7084578	A	G	0.00346	ZNF557	+	TRUE	AluJb	SINE,Alu
chr1	27202982	T	C	0.00850		.	FALSE	AluSq2	SINE,Alu
chr1	179813613	T	C	7.15786E-05	TOR1AIP2	-	FALSE
chr2	37431681	A	G	0.00436	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr1	156206121	G	A	0.00423	PMF1-BGLAP,PMF1	+	FALSE
chr1	113239382	G	A	0.00519	MOV10	+	FALSE
chr3	183899832	C	T	1.28780E-06	AP2M1	+	FALSE
chr1	149577127	G	C	0.00709	LINC00623,LINC00869,LOC103091866	+	FALSE
chr1	10517512	T	C	0.00514		.	FALSE	AluSx1	SINE,Alu
chr2	37429626	A	G	0.00385	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	51822219	G	A	0.00223	EPS15	-	FALSE
chr1	16890639	C	T	0.00095	NBPF1	-	FALSE
chr1	16203171	C	T	3.13656E-06	SPEN	+	FALSE
chr1	145688973	A	G	7.17653E-05	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	180991777	T	C	0.00629	STX6	-	FALSE
chr1	44685732	T	C	8.08877E-10	DMAP1	+	FALSE
chr1	177977067	A	G	0.00030	LOC730102	-	FALSE
chr1	36068227	T	C	0.00398	PSMB2	-	TRUE	AluSc	SINE,Alu
chr17	79780692	T	C	0.00116	MCRIP1	-	TRUE
chr1	47142538	G	A	0.00870	EFCAB14-AS1,EFCAB14	+,-	FALSE
chr1	155039464	C	T	2.82294E-06	EFNA4	+	FALSE
chr2	101622886	T	A	0.00705	RPL31	+	FALSE
chr6	29910583	C	T	4.95604E-05		.	FALSE
chr3	160213317	T	A	0.00208	KPNA4	-	FALSE
chr1	45976722	G	T	0.00292	MMACHC,PRDX1	+,-	FALSE
chr7	299850	G	T	1.36182E-06	FAM20C	+	FALSE
chr1	16921146	T	C	0.00835	NBPF1	-	FALSE
chr1	53292607	T	A	2.07283E-05	ZYG11B	+	FALSE
chr3	179042910	A	G	0.00860	ZNF639	+	TRUE	AluSp	SINE,Alu
chr5	53841241	T	A	0.00372	SNX18	+	FALSE
chr4	38946481	A	G	0.00168	FAM114A1	+	FALSE	MER1B	SINE,Alu
chr4	120216206	C	T	0.00205	USP53	+	FALSE
chr5	176883676	A	T	0.00456	DBN1	-	FALSE	(A)n	SINE,Alu
chr8	144332082	T	C	7.73207E-05	ZFP41	+	FALSE
chr3	124732406	C	A	0.00975	HEG1	-	FALSE
chr1	8413839	A	G	0.00776	RERE	-	FALSE
chr1	94995225	G	A	0.00344	F3	-	FALSE
chr3	155660833	A	G	0.00020		.	FALSE	AluSz	SINE,Alu
chr2	10580506	A	T	0.00294	ODC1	-	FALSE
chr1	16384843	G	C	0.00049	FAM131C	-	FALSE
chr10	51026705	C	G	0.00456	PARG	-	FALSE
chr5	150869672	A	T	0.00755	SLC36A1	+	FALSE
chr2	191745652	A	T	1.16463E-05	GLS	+	FALSE
chr3	58308214	G	A	0.00113		.	FALSE	LTR49	SINE,Alu
chr8	141530799	G	A	0.00525		.	FALSE
chr2	68402154	A	T	0.00991	PNO1	+	FALSE
chr1	33086876	T	C	0.00075	ZBTB8OS	-	TRUE	AluY	SINE,Alu
chr1	1595586	T	C	0.00206	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr2	191224981	G	T	0.00245	INPP1	+	FALSE
chr1	10517659	T	C	0.00010		.	FALSE	AluSx1	SINE,Alu
chr19	46289409	C	T	6.23760E-05	DMWD	-	FALSE
chr3	5258236	G	C	3.37681E-06	EDEM1	+	FALSE
chr1	16892135	G	A	0.00508	NBPF1	-	FALSE
chr2	114356336	C	T	0.00680	WASH2P	+	FALSE
chr2	24494638	T	G	0.00495	ITSN2	-	FALSE	(TATCCT)n	SINE,Alu
chr1	162354203	A	G	0.00956	C1orf226	+	FALSE
chr1	6283439	T	C	0.00786	ICMT	-	TRUE	AluSx3	SINE,Alu
chr6	42048297	A	G	0.00307	TAF8	+	TRUE	AluSq2	SINE,Alu
chr1	95658346	T	A	0.00098	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr7	107788257	C	T	0.00068	NRCAM	-	FALSE
chr1	145689271	A	G	0.00250	NBPF20,NBPF10	+	FALSE
chr2	232319524	T	A	0.00245	NCL	-	FALSE
chr1	16890130	A	C	0.00594	NBPF1	-	FALSE
chr4	17803616	T	C	4.59289E-05	DCAF16	-	TRUE	AluY	SINE,Alu
chr4	3769307	C	A	0.00173	ADRA2C	+	FALSE
chr1	10518037	T	C	0.00017		.	FALSE	AluJr	SINE,Alu
chr1	3371371	C	G	0.00844	ARHGEF16	+	FALSE
chr5	79923843	T	C	0.00229	DHFR	-	TRUE	AluSp	SINE,Alu
chr1	20975992	T	C	0.00027	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	97543764	C	T	0.00840	DPYD	-	FALSE
chr1	10520072	T	C	0.00226		.	FALSE	AluSx	SINE,Alu
chr3	196078364	G	A	0.00290		.	FALSE	GA-rich	SINE,Alu
chr1	37949224	C	T	7.78396E-10	ZC3H12A	+	FALSE
chr1	1001422	G	T	0.00998		.	FALSE	LTR13A	SINE,Alu
chr1	16133912	T	C	0.00126	UQCRHL	-	TRUE
chr3	155660873	A	G	0.00018		.	FALSE	AluSz	SINE,Alu
chr1	117648345	A	G	0.00739		.	FALSE
chr5	40828062	A	G	0.00733	LOC100506548	-	FALSE
chr1	28661767	A	G	0.00242	MED18	+	TRUE	AluSg	SINE,Alu
chr3	45267310	C	T	0.00038	TMEM158	-	FALSE
chr1	144828784	A	G	0.00053	NBPF20,NBPF9	+	FALSE
chr14	74526154	T	C	0.00126	BBOF1,ALDH6A1	+,-	FALSE	AluSp	SINE,Alu
chr1	6311399	A	G	0.00126	GPR153	-	FALSE
chr1	38326728	T	C	0.00399	INPP5B	-	TRUE	AluJr	SINE,Alu
chr3	19992432	G	T	0.00017	RAB5A	+	FALSE
chr1	205684067	T	C	0.00499	NUCKS1	-	FALSE
chr3	10192633	A	G	8.20807E-06	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	182569291	A	T	0.00979	RGS16	-	FALSE
chr5	52251222	G	T	0.00808		.	FALSE	(GATA)n	SINE,Alu
chr4	39116911	T	C	0.00303	KLHL5	+	FALSE
chr4	113152490	G	A	0.00221		.	FALSE
chr5	135391374	C	T	3.54402E-06	TGFBI	+	FALSE
chr1	9163405	T	C	0.00014		.	FALSE	AluSp	SINE,Alu
chr1	51822219	G	A	0.00017	EPS15	-	FALSE
chr11	68523472	T	C	0.00649	CPT1A	-	TRUE	AluSq	SINE,Alu
chr1	36068325	T	C	0.00746	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	100490067	A	G	0.00267	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr20	35520977	T	C	0.00359	TLDC2,SAMHD1	+,-	FALSE	FLAM_A	SINE,Alu
chr1	24935369	A	G	0.00454	NCMAP	+	TRUE	AluJb	SINE,Alu
chr1	241795525	A	G	0.00165	OPN3,CHML	-	FALSE	THE1B	SINE,Alu
chr1	19543282	T	C	0.00020	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr8	37351214	T	C	0.00109	LINC01605	-	FALSE
chr5	115166350	T	C	0.00148	ATG12	-	TRUE	AluJr	SINE,Alu
chr2	50147867	T	A	0.00896	NRXN1	-	FALSE	(GT)n	SINE,Alu
chr1	6259433	G	A	0.00493	RPL22	-	FALSE	G-rich	SINE,Alu
chr1	109535116	G	A	0.00013	WDR47	-	FALSE
chr2	197001673	T	C	0.00043	STK17B	-	FALSE
chr7	116437206	A	G	0.00118	MET	+	FALSE
chr1	65898873	G	C	0.00530	LEPR,LEPROT	+	FALSE
chr10	60047611	G	A	0.00855	CISD1	+	FALSE	(A)n	SINE,Alu
chr1	569991	T	G	0.00980		.	FALSE
chr6	42856019	A	G	0.00184	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr17	57279258	A	G	0.00114	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	20238574	C	T	6.32696E-05	OTUD3	+	FALSE
chr1	36067925	T	C	0.00397	PSMB2	-	TRUE	AluSz	SINE,Alu
chr6	34249357	T	A	0.00373		.	FALSE
chr1	169101270	T	G	0.00036	ATP1B1	+	FALSE	(T)n	SINE,Alu
chr17	45219755	G	T	0.00592	CDC27	-	FALSE
chr1	10517276	T	C	0.00079		.	FALSE	AluJr	SINE,Alu
chr1	8877520	A	T	0.00308	RERE	-	FALSE
chr2	24227357	A	G	0.00295		.	FALSE	AluSc	SINE,Alu
chr1	36068295	T	C	0.00910	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	64860431	T	G	0.00213	SERTAD2	-	FALSE
chr17	65334856	T	C	1.38810E-06	PSMD12	-	TRUE	AluSq	SINE,Alu
chr3	194789330	G	T	0.00150	XXYLT1	-	FALSE	AluJr	SINE,Alu
chr4	52753346	A	G	0.00782	DCUN1D4	+	TRUE	AluSc	SINE,Alu
chr6	24720533	C	G	0.00023		.	FALSE
chr4	17802919	T	C	0.00857	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	6582470	T	C	0.00370	NOL9	-	TRUE	AluSx1	SINE,Alu
chr3	15113783	T	C	0.00127	RBSN	-	FALSE	AluSz6	SINE,Alu
chr1	36067677	T	C	1.65353E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	192515557	G	A	0.00130	MB21D2	-	FALSE
chr1	19542250	T	C	0.00859	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr9	89626918	A	G	0.00048	LOC440173	-	FALSE
chr16	56510329	T	G	0.00247	OGFOD1	+	FALSE
chr1	27992824	G	A	0.00025	IFI6	-	FALSE
chr7	100031498	T	C	0.00110	MEPCE	+	FALSE
chr1	89447720	G	A	0.00029	KYAT3,RBMXL1	-	FALSE
chr1	33149375	A	G	0.00148	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr2	9629305	A	T	0.00591	ADAM17	-	FALSE
chr1	179832748	G	C	7.50400E-12	TOR1AIP2	-	FALSE	FLAM_C	SINE,Alu
chr1	182360930	A	G	0.00506	GLUL	-	FALSE
chr1	145442111	C	A	0.00090	NBPF20,NBPF10,TXNIP	+	FALSE
chr1	46076543	A	G	0.00420	NASP	+	TRUE	AluSx	SINE,Alu
chr1	1252662	T	C	0.00136	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr7	30536611	T	C	0.00421	GGCT	-	FALSE
chr1	16890286	C	T	3.65680E-06	NBPF1	-	FALSE
chr1	9989022	A	G	0.00616	LZIC	-	FALSE	L1MB5	SINE,Alu
chr1	154557184	G	A	0.00558	ADAR	-	FALSE	A-rich	SINE,Alu
chr2	189877304	A	T	0.00612	COL3A1	+	FALSE
chr1	9328094	A	G	0.00107	H6PD	+	TRUE	AluJr	SINE,Alu
chr7	29960812	T	A	1.34773E-06	SCRN1	-	FALSE
chr9	136209399	A	T	0.00011	MED22	-	FALSE
chrX	123046892	A	G	0.00064	XIAP	+	TRUE	AluSx	SINE,Alu
chr1	145511993	A	G	0.00088	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr5	145506100	G	A	0.00586	LARS	-	FALSE
chr2	61416403	T	G	0.00350	USP34	-	FALSE	AluSc8	SINE,Alu
chr1	116235186	A	G	0.00054	VANGL1	+	FALSE
chr1	144922523	C	T	0.00566	NBPF20,PDE4DIP	+,-	FALSE
chr1	28836872	A	G	0.00019	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr3	148748198	G	A	3.62985E-05	HLTF	-	FALSE
chr8	30643553	A	G	0.00968	PPP2CB	-	FALSE
chr17	76799795	G	A	0.00363	USP36	-	FALSE
chr3	40353799	G	T	0.00906	EIF1B	+	FALSE
chr2	31557839	G	T	0.00014	XDH	-	FALSE	AluJr	SINE,Alu
chr1	19543456	T	C	0.00760	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr7	43679092	G	C	1.19724E-06	COA1	-	FALSE
chr1	28662053	G	A	0.00158	MED18	+	FALSE	AluSq2	SINE,Alu
chr17	42876808	T	C	0.00147	GJC1	-	TRUE	AluSz6	SINE,Alu
chr2	113509977	C	T	0.00197	CKAP2L	-	FALSE
chr1	144828683	C	G	3.91144E-05	NBPF20,NBPF9	+	FALSE
chr5	37290504	T	C	0.00410		.	FALSE	AluSz	SINE,Alu
chr1	200589540	T	A	0.00151	KIF14	-	FALSE
chr20	54963816	T	C	0.00750	AURKA	-	TRUE	AluSq10	SINE,Alu
chr3	191114309	A	T	0.00209	CCDC50	+	FALSE
chr16	75480021	T	C	0.00270	TMEM170A	-	TRUE	AluSg4	SINE,Alu
chr1	100654765	T	C	0.00254	DBT	-	TRUE	AluSz	SINE,Alu
chr12	56510706	A	G	0.00053	RPL41	+	FALSE
chr1	10517513	T	C	0.00088		.	FALSE	AluSx1	SINE,Alu
chr1	1255402	C	G	0.00785	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr1	11190646	G	A	0.00644	MTOR	-	FALSE
chr1	23636273	A	T	0.00442	HNRNPR	-	FALSE
chr1	148004307	T	C	0.00935	NBPF8	-	FALSE
chr3	196612193	A	G	7.35500E-07	SENP5	+	FALSE
chr1	70610735	T	C	0.00259	LRRC40	-	FALSE
chr1	16928622	C	A	0.00011	NBPF1	-	FALSE
chr2	136542427	T	A	0.00075	UBXN4	+	FALSE	L1ME4b	SINE,Alu
chr1	148932848	A	G	0.00496	LOC645166	+	FALSE
chr1	160175191	A	C	0.00509	LOC729867,PEA15	+,-	FALSE	(GGC)n	SINE,Alu
chr2	234386134	A	G	0.00196	USP40	-	FALSE
chr1	172580637	T	C	1.47330E-06	SUCO	+	FALSE
chr1	10518591	A	T	0.00811		.	FALSE
chr1	52520866	C	T	0.00108	TXNDC12	-	FALSE
chr1	32706126	G	A	0.00932	MTMR9LP	-	FALSE
chr1	3730400	T	C	0.00800	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	87328397	A	T	0.00252	SEP15	-	FALSE
chr3	113528895	A	T	0.00191	ATP6V1A	+	FALSE	AluSp	SINE,Alu
chr6	90344222	T	C	0.00451	LYRM2	-	TRUE	AluJo	SINE,Alu
chr1	9163110	T	C	4.21626E-05		.	FALSE	FRAM	SINE,Alu
chr1	68940885	G	A	0.00500	DEPDC1	-	FALSE	MIR	SINE,Alu
chr1	92862836	A	G	0.00430		.	FALSE	AluJr	SINE,Alu
chr1	36770073	A	T	4.33965E-05	THRAP3	+	FALSE
chr1	28825830	A	G	0.00549	PHACTR4	+	TRUE	AluSp	SINE,Alu
chr1	10520649	T	C	0.00629	DFFA	-	TRUE	AluSc8	SINE,Alu
chr8	100890376	G	T	0.00920	COX6C	-	FALSE

RBP	DNAJC21
Knock-Method	shRNA
RBP Family	zf-C2H2_jaz
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR385KOY
Platform	HiSeq
Pubmed ID	32252787

DNAJC21 - Target Gene Network