RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr17	4928967	T	G	0.00921	KIF1C	+	FALSE	AluY	SINE,Alu
chr2	40336210	C	T	0.00828	SLC8A1-AS1	+	FALSE
chr1	53291395	A	G	0.00017	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr4	6675519	A	C	0.00064	LOC105374366	-	FALSE
chr1	31838550	T	A	0.00595	FABP3	-	FALSE
chr5	141691252	T	C	0.00596	SPRY4	-	FALSE
chr12	133298465	A	G	5.98085E-08	PGAM5	+	TRUE	AluSp	SINE,Alu
chr5	72876776	C	A	0.00875	UTP15	+	FALSE
chr3	196660344	T	A	0.00366	SENP5	+	FALSE
chr7	100031497	T	G	0.00119	MEPCE	+	FALSE
chr3	195242996	C	A	0.00136	PPP1R2	-	FALSE
chr1	146650337	G	T	0.00589	PDIA3P1	+	FALSE
chr1	19984100	G	C	0.00037	MINOS1-NBL1,NBL1	+	FALSE
chr1	26608021	T	A	0.00069		.	FALSE
chr1	16933135	G	T	2.86961E-06	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr2	38975953	T	A	0.00432	SRSF7	-	FALSE
chr4	165999188	T	C	0.00751	TMEM192	-	TRUE	FLAM_C	SINE,Alu
chr4	190864378	T	G	0.00247	FRG1	+	FALSE	GA-rich	SINE,Alu
chr19	51305797	T	C	0.00397	C19orf48	-	TRUE	AluSg	SINE,Alu
chr1	16891340	T	A	0.00229	NBPF1	-	FALSE
chr15	41590839	A	G	0.00344	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr1	16889566	T	C	0.00305	NBPF1	-	TRUE
chrX	77083614	T	C	6.82446E-05	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr16	80636806	T	G	0.00926	CDYL2	-	FALSE
chr3	45721990	A	G	0.00779	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	19543282	T	C	0.00228	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	100654813	T	C	0.00352	DBT	-	TRUE	AluSz	SINE,Alu
chr1	1252510	T	C	1.62601E-05	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr1	145375869	G	A	0.00480	NBPF20,NBPF10	+	FALSE
chr6	143382538	A	T	0.00145	AIG1	+	FALSE
chr1	11141187	C	G	0.00814	EXOSC10	-	FALSE
chr1	201845899	G	T	1.72907E-05	IPO9	+	FALSE
chr5	79923361	T	C	0.00013	DHFR	-	TRUE	AluJr	SINE,Alu
chr1	228880466	G	A	0.00216	RHOU	+	FALSE
chr1	50906945	C	T	0.00178	FAF1	-	FALSE
chr5	180682608	C	A	0.00144	CTC-338M12.4	+	FALSE
chr1	67874859	T	C	0.00027	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	109239335	G	T	0.00011	PRPF38B	+	FALSE
chr1	62627128	A	G	2.94675E-05	PATJ	+	TRUE	AluSx	SINE,Alu
chr1	40435513	C	A	0.00656	MFSD2A	+	FALSE
chr1	26143725	A	T	0.00116	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	144822920	A	T	0.00040	NBPF20,NBPF9	+	FALSE
chr1	145512081	A	G	0.00579	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	155403823	A	G	0.00850	ASH1L,POU5F1P4	+,-	FALSE
chr15	42859452	A	G	0.00123	HAUS2	+	TRUE	AluJb	SINE,Alu
chr5	176883676	A	T	0.00456	DBN1	-	FALSE	(A)n	SINE,Alu
chr1	53291434	A	G	0.00108	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr10	75008847	T	C	0.00349	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	3546128	A	G	0.00703	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr1	144874760	T	C	0.00267	NBPF20,PDE4DIP	+,-	FALSE
chr2	201774279	T	C	9.55391E-05		.	FALSE	AluSz	SINE,Alu
chr15	60678712	G	A	0.00801	ANXA2	-	FALSE
chr4	57326291	A	G	0.00424	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	201846675	C	T	0.00146	IPO9	+	FALSE
chr12	98942665	A	G	1.31028E-05	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	28662057	A	G	3.94650E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr2	55462744	C	A	0.00033	RPS27A	+	FALSE
chr1	143135063	C	A	0.00397	LOC102723769	-	FALSE
chr2	128601464	T	C	0.00161		.	FALSE	AluJr	SINE,Alu
chr5	74063154	C	G	0.00255	GFM2,NSA2	+,-	FALSE
chr3	42266349	C	T	0.00942	TRAK1	+	FALSE
chr9	114696428	G	T	0.00163	UGCG	+	FALSE	(TGTTTTT)n	SINE,Alu
chr1	145512166	T	A	0.00823	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr3	141164940	C	A	0.00194	ZBTB38	+	FALSE
chr1	1337736	C	G	0.00012	MRPL20	-	FALSE
chr6	3266908	G	A	0.00974	PSMG4	+	FALSE
chr1	46093409	A	C	0.00383	GPBP1L1	-	FALSE	A-rich	SINE,Alu
chr7	138764145	T	C	0.00399	ZC3HAV1	-	FALSE
chr1	894375	G	A	0.00052	NOC2L	-	FALSE
chr1	17199303	G	A	0.00062	LOC440570	+	FALSE
chr1	19586520	A	G	6.58771E-06	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	15818065	T	C	0.00372	CASP9	-	TRUE	AluJb	SINE,Alu
chr7	86816663	A	G	0.00103	DMTF1	+	TRUE	AluJr	SINE,Alu
chr2	191555984	T	A	0.00171	NAB1	+	FALSE
chr1	27107950	G	A	0.00249	ARID1A	+	FALSE
chr2	85132775	C	G	7.25564E-06	TMSB10	+	FALSE
chr1	36068052	G	T	1.69686E-12	PSMB2	-	FALSE	L1ME4b	SINE,Alu
chr14	75202287	T	C	0.00757	FCF1	+	FALSE	AluSc	SINE,Alu
chr1	109818158	C	T	4.51493E-05	CELSR2	+	FALSE
chr1	33148225	A	G	0.00031	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	10517623	T	C	0.00664		.	FALSE	AluSx1	SINE,Alu
chr1	6279957	A	G	0.00814	RNF207	+	TRUE	AluSp	SINE,Alu
chr1	24288529	T	C	0.00401	PNRC2	+	FALSE
chr2	88913273	G	C	0.00152	EIF2AK3	-	FALSE
chr6	71298816	A	T	0.00287		.	FALSE
chrM	9988	T	C	0.00011		.	FALSE
chr5	17276055	T	C	0.00784	BASP1	+	FALSE	(TC)n	SINE,Alu
chr1	120164994	C	T	0.00829	ZNF697	-	FALSE
chr6	42856959	A	G	6.63353E-07	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	1650797	A	G	3.70820E-05	CDK11B,CDK11A	-	FALSE
chr1	144598755	G	A	0.00743	NBPF20	+	FALSE
chr15	89739348	A	G	0.00035	ABHD2	+	FALSE	MER5A	SINE,Alu
chr9	131093971	A	G	0.00033	COQ4	+	TRUE	AluJo	SINE,Alu
chr6	57034841	G	T	0.00581	ZNF451,LOC101927211	+,-	FALSE
chr1	110551680	C	T	0.00415	AHCYL1	+	FALSE
chr1	156084582	T	C	0.00195	LMNA	+	FALSE
chr15	86288387	C	T	0.00809	AKAP13	+	FALSE
chr4	38945689	C	T	1.01800E-05	FAM114A1	+	FALSE	AluSc	SINE,Alu
chr1	10517306	T	C	0.00022		.	FALSE	AluJr	SINE,Alu
chr1	32687472	G	A	0.00877	TMEM234,EIF3I	+,-	FALSE
chr1	100676277	A	G	0.00135	DBT	-	FALSE
chr15	23313171	A	G	0.00257	HERC2P2	-	FALSE
chr1	9740894	C	T	0.00097	PIK3CD,PIK3CD-AS2	+,-	FALSE	MLT1F1	SINE,Alu
chr1	220231254	T	C	0.00376	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	46117185	C	T	0.00714	GPBP1L1	-	FALSE
chr8	145159705	G	A	0.00383	MAF1	+	FALSE
chr1	28825418	A	G	0.00046	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr10	70742774	A	T	0.00504	DDX21	+	FALSE
chr1	182993025	C	T	0.00490	LAMC1	+	FALSE
chr3	179116220	T	C	0.00343	GNB4	-	TRUE	AluSz6	SINE,Alu
chr2	232319593	A	C	0.00348	NCL	-	FALSE	A-rich	SINE,Alu
chr2	38971644	T	G	0.00239	SRSF7	-	FALSE
chr6	43582795	A	G	0.00087	POLH	+	TRUE	AluSx1	SINE,Alu
chr14	21929014	T	C	0.00749	RAB2B	-	TRUE	AluSp	SINE,Alu
chr1	179326882	A	G	1.03454E-05	SOAT1	+	TRUE	AluJo	SINE,Alu
chr2	37329307	T	C	0.00102		.	FALSE	AluJr4	SINE,Alu
chr1	47184539	C	T	0.00425	EFCAB14	-	FALSE
chr1	11181327	C	T	0.00525	MTOR	-	FALSE
chr1	33240842	C	T	0.00446	YARS	-	FALSE
chr19	1981317	T	A	0.00539	CSNK1G2	+	FALSE
chr1	205686520	A	G	0.00980	NUCKS1	-	FALSE
chr20	25427823	A	G	0.00054	GINS1	+	TRUE	AluSz	SINE,Alu
chr4	128756628	A	G	0.00011		.	FALSE	AluSx	SINE,Alu
chr2	102484482	G	A	0.00213	MAP4K4	+	FALSE
chr1	29644328	C	T	0.00014	PTPRU	+	FALSE
chr1	155106227	A	T	0.00137	EFNA1	+	FALSE
chr1	208198625	C	T	8.83580E-05	PLXNA2	-	FALSE
chr9	138798859	C	A	0.00291	CAMSAP1	-	FALSE
chr1	24022910	G	A	0.00702	RPL11	+	FALSE
chr1	19586455	A	G	0.00772	MRTO4	+	TRUE	AluSz	SINE,Alu
chr2	3592674	C	A	0.00011	RNASEH1	-	FALSE
chr3	66430372	T	A	0.00300	LRIG1	-	FALSE
chr2	215674224	G	A	9.97816E-05	BARD1	-	FALSE
chr3	44791553	T	C	1.10852E-07	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr5	52397314	C	T	0.00249	MOCS2	-	FALSE
chr2	37431639	T	C	0.00160	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr1	145100851	A	G	0.00066	NBPF20,SEC22B	+	FALSE	AluSg4	SINE,Alu
chr3	172351006	C	G	6.14326E-06	NCEH1	-	FALSE
chr12	123347005	T	A	0.00268	HIP1R	+	FALSE
chr2	219100706	A	G	0.00874	ARPC2	+	TRUE	AluSx1	SINE,Alu
chr10	60157509	T	G	0.00296	TFAM	+	FALSE
chr1	28662254	A	G	0.00052	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	23631625	A	G	0.00536	HNRNPR	-	FALSE	UCON44	SINE,Alu
chr6	160526904	T	G	0.00027	IGF2R	+	FALSE
chr1	10043053	A	G	0.00042	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr2	191067766	T	C	0.00034	C2orf88	+	FALSE
chr1	10518688	T	C	0.00154		.	FALSE	AluSx1	SINE,Alu
chr5	1574319	T	A	0.00158	SDHAP3	-	FALSE
chr1	78414310	C	A	0.00067	FUBP1	-	FALSE
chr19	23542304	T	C	2.38814E-05	ZNF91	-	TRUE	AluY	SINE,Alu
chr7	2394991	C	T	9.93448E-08	EIF3B	+	FALSE
chr1	168212509	A	G	0.00765		.	FALSE
chr1	77165735	A	G	0.00227		.	FALSE
chr1	156011444	T	C	0.00483	UBQLN4	-	FALSE
chr11	65764470	T	C	0.00435	EIF1AD	-	TRUE	AluSz6	SINE,Alu
chr4	129796173	G	T	1.40481E-05	JADE1	+	FALSE
chr6	52365328	T	G	0.00983	TRAM2	-	FALSE	(T)n	SINE,Alu
chr1	86852621	A	G	0.00930	ODF2L	-	FALSE
chr2	85776590	T	C	0.00950	GGCX	-	TRUE	AluSz6	SINE,Alu
chr15	90819471	A	G	7.41591E-05		.	FALSE	AluSx	SINE,Alu
chr1	22161275	G	A	0.00600	HSPG2	-	FALSE
chr2	37327670	T	C	0.00021		.	FALSE
chr1	10520383	T	C	0.00401		.	FALSE	AluSx1	SINE,Alu
chr15	65442112	T	C	0.00529	CLPX	-	TRUE	AluSg	SINE,Alu
chr5	149829073	A	G	0.00866	RPS14	-	FALSE
chr6	160100882	T	C	0.00494	SOD2	-	TRUE	AluSz	SINE,Alu
chr5	74669972	C	T	0.00113	COL4A3BP	-	FALSE
chr2	32535568	A	G	0.00192		.	FALSE	MER8	SINE,Alu
chr2	217366515	A	G	0.00357		.	FALSE	AluSz	SINE,Alu
chr1	36067811	T	C	0.00467	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	152186699	T	A	0.00891	HRNR	-	FALSE
chr2	55516940	A	C	0.00389	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr7	100031511	C	T	0.00490	MEPCE	+	FALSE
chr1	145512098	A	G	0.00707	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	31905886	C	A	0.00335	SERINC2	+	FALSE
chr1	6283264	T	C	0.00287	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	119693495	A	G	0.00996	LOC101929147	+	TRUE	AluSx	SINE,Alu
chr1	179042692	A	G	0.00707	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	10520145	T	C	0.00590		.	FALSE	AluSx	SINE,Alu
chr2	85837797	T	C	0.00050	USP39,C2orf68	+,-	FALSE	AluSx	SINE,Alu
chr6	33268621	T	C	0.00367		.	FALSE	AluY	SINE,Alu
chr1	114940211	G	T	0.00925	TRIM33	-	FALSE	(T)n	SINE,Alu
chr5	149013587	G	A	0.00102	ARHGEF37	+	FALSE	L2d	SINE,Alu
chr1	31532379	A	G	0.00061	PUM1	-	FALSE
chr3	45721989	A	G	0.00713	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr3	33877626	G	A	2.14228E-08	PDCD6IP	+	FALSE
chr1	93297595	G	T	0.00479	RPL5	+	FALSE
chr7	2274209	T	C	0.00578	MRM2	-	FALSE	AluJr	SINE,Alu
chr1	44088112	G	T	0.00822	PTPRF	+	FALSE	(T)n	SINE,Alu
chr1	24288530	A	T	0.00915	PNRC2	+	FALSE
chr7	75958149	A	C	0.00050	YWHAG	-	FALSE
chr17	43364293	C	G	0.00144	MAP3K14	-	FALSE
chr2	37331525	T	C	0.00140		.	FALSE	AluJb	SINE,Alu
chr7	128142833	A	G	6.82570E-05	METTL2B	+	TRUE	AluSx1	SINE,Alu
chr12	12967264	C	G	0.00781	DDX47	+	FALSE
chr3	156258295	T	C	0.00096	SSR3	-	TRUE	AluYk3	SINE,Alu
chr2	114356360	G	A	0.00520	WASH2P	+	FALSE
chr2	32535692	A	G	0.00236		.	FALSE	AluJb	SINE,Alu
chr1	26158907	A	G	0.00061	MTFR1L,AUNIP	+,-	FALSE
chr1	183218871	G	T	0.00025	NMNAT2	-	FALSE
chr1	144833386	A	G	0.00325	NBPF20	+	FALSE	L1MEc	SINE,Alu
chr1	1595586	T	C	0.00051	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr9	115447518	T	C	0.00084	INIP	-	TRUE	AluJb	SINE,Alu
chrX	24095285	A	G	0.00135	EIF2S3	+	TRUE	AluSx	SINE,Alu
chr3	17201882	C	T	0.00259	TBC1D5	-	FALSE
chr4	25236017	T	C	0.00291	PI4K2B	+	FALSE
chr1	10003320	G	A	0.00168	LZIC,NMNAT1	+,-	FALSE
chr1	36923643	G	C	0.00409	MRPS15	-	FALSE
chr1	45975345	A	G	0.00127	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr10	61548856	T	C	0.00067	CCDC6	-	FALSE
chr1	36067817	T	C	0.00120	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	788795	T	G	0.00333	LINC01128	+	FALSE	Charlie19a	SINE,Alu
chr1	6583457	T	C	9.96562E-05	NOL9	-	TRUE	AluSq	SINE,Alu
chr17	4930749	A	G	0.00025	KIF1C	+	TRUE	FLAM_A	SINE,Alu
chr2	39009427	A	G	0.00673		.	FALSE	AluSx3	SINE,Alu
chr1	94995653	A	C	0.00035	F3	-	FALSE	AluSx	SINE,Alu
chr1	6354955	G	A	0.00282	ACOT7	-	FALSE
chr16	29454295	T	C	0.00019	SMG1P6,BOLA2-SMG1P6	-	TRUE	Tigger4a	SINE,Alu
chr14	50053348	G	A	0.00067		.	FALSE	7SLRNA	SINE,Alu
chr1	33071096	A	G	0.00139	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr13	31033325	C	A	0.00792	HMGB1	-	FALSE
chr19	42731991	A	G	0.00598		.	FALSE	AluJr	SINE,Alu
chr1	25688276	A	G	0.00187	TMEM50A	+	FALSE
chr3	47628808	A	T	0.00792	SMARCC1	-	FALSE
chr2	71214819	A	T	0.00346	TEX261	-	FALSE
chr16	10623688	T	C	0.00766	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	2335348	C	T	0.00018	RER1	+	FALSE
chr1	45244421	G	A	0.00925		.	FALSE
chr1	10517659	T	C	0.00516		.	FALSE	AluSx1	SINE,Alu
chr10	95163809	G	T	0.00453	MYOF	-	FALSE
chr1	12628188	T	C	3.43513E-08	DHRS3	-	FALSE
chr2	206862015	G	A	0.00026	INO80D	-	FALSE
chr2	128949255	A	G	0.00063	UGGT1	+	TRUE	AluSg	SINE,Alu
chr1	326539	A	G	0.00450		.	FALSE
chr1	46830110	A	G	0.00283	NSUN4	+	TRUE	AluSx1	SINE,Alu
chr15	90819472	A	G	0.00068		.	FALSE	AluSx	SINE,Alu
chr1	150548883	A	C	0.00255	MCL1	-	FALSE
chr2	102484489	A	C	0.00281	MAP4K4	+	FALSE
chr1	19542679	T	C	0.00584	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr9	9442082	T	G	0.00052	PTPRD	-	FALSE	7SLRNA	SINE,Alu
chr1	93827995	C	T	0.00714	DR1	+	FALSE
chr19	57816349	A	G	8.96695E-06		.	FALSE	AluY	SINE,Alu
chr1	44423703	C	T	1.17684E-14	IPO13	+	FALSE
chr2	26617209	A	G	5.06124E-05	EPT1	+	FALSE	AluSz	SINE,Alu
chr1	179042905	A	G	0.00034	FAM20B	+	TRUE
chr1	32742441	G	A	2.83845E-11	LCK	+	FALSE
chr2	85772404	C	A	0.00015	GGCX	-	FALSE
chr1	145284883	A	G	0.00329	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr1	145369556	A	G	0.00061	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	28859267	A	C	2.52971E-07	RCC1	+	FALSE
chr17	73940167	T	C	0.00035	ACOX1	-	TRUE	AluJb	SINE,Alu
chr5	109204057	T	A	0.00614	MAN2A1	+	FALSE
chr2	37330612	T	C	0.00136		.	FALSE	AluSq2	SINE,Alu
chr2	112252630	A	C	0.00040	MIR4435-2HG	-	FALSE

RBP	IGF2BP3
Knock-Method	shRNA
RBP Family	KH_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR302JQA
Platform	HiSeq
Pubmed ID	32252787

IGF2BP3 - Target Gene Network