Dataset Overview
RBPDDX19B
Knock-MethodshRNA
RBP FamilyDEAD
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR281IUF
PlatformHiSeq
Pubmed ID32252787

DDX19B - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of DDX19B
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of DDX19B


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr2128601464TC0.00161.FALSEAluJrSINE,Alu
chr2114513901CT0.00655SLC35F5-FALSE
chr1117117182CT0.00270IGSF3-FALSE
chr2152976703TA0.00126STAM2-FALSE
chr136533368AG0.00635.FALSEAluSxSINE,Alu
chr1592715131AT0.00306SLCO3A1+FALSE
chr142886523TC0.00649RIMKLA+FALSEMIRcSINE,Alu
chr136067838TC2.61513E-05PSMB2-TRUEAluSzSINE,Alu
chr2109301115TA0.00150LIMS1+FALSE
chr7137561076AG0.00488CREB3L2-FALSE
chr145476889CG0.00969HECTD3-FALSE
chr145241587GA0.00248RPS8,SNORD55+FALSE
chr210198113CA0.00893CYS1-FALSE
chr2208619742AG1.70106E-07CCNYL1+TRUEAluJbSINE,Alu
chr1161931167AG0.00251ATF6+FALSE
chr1540954864AG0.00636KNL1+TRUE
chr285548639AG0.00687TGOLN2-FALSE
chr116893721AC0.00043NBPF1-FALSE
chr4169847647AT0.00328PALLD+FALSE
chr1179325847AG7.26692E-05SOAT1+TRUEAluJoSINE,Alu
chr631321806CT6.66134E-15.FALSE
chr6160211652CG0.00719MRPL18+FALSE
chr5157185192AG0.00835LSM11+TRUEAluSqSINE,Alu
chr1114940228CT0.00734TRIM33-FALSE(T)nSINE,Alu
chr119542463TC0.00447LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr9127711532TC0.00018SCAI-TRUEAluSpSINE,Alu
chr299813003AG2.46688E-05MRPL30+TRUEAluJbSINE,Alu
chr1169768080CA0.00980C1orf112+FALSE
chr120977748TG0.00474PINK1,PINK1-AS+,-FALSE
chr1109475569AG0.00046GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr1847919174AG0.00820SKA1+TRUEAluYk4SINE,Alu
chr11421186CT0.00834ATAD3B+FALSE
chr153289892AG0.00505ZYG11B+TRUEFRAMSINE,Alu
chr3195963395AG0.00028.FALSE
chr1476671382AG0.00777GPATCH2L+TRUEAluJr4SINE,Alu
chr19163319TC0.00936.FALSEAluSpSINE,Alu
chr2132278713TC0.00317LOC150776+FALSE
chr163207363CT0.00104.FALSE
chr2130807905GT0.00634FAR2P1-FALSE
chr11288481CA0.00013MXRA8-FALSE
chr333138549GA0.00612GLB1-FALSE
chr147184569GC0.00027EFCAB14-FALSE
chr1150548877CG0.00071MCL1-FALSE
chr1145311900CT0.00286NBPF20,NBPF10+FALSE
chr631324036TA0.00378.FALSE
chr126801731GT0.00325HMGN2+FALSE(T)nSINE,Alu
chr3158547143GA0.00178MFSD1+FALSE
chr145975673AG0.00410MMACHC+TRUEAluSx4SINE,Alu
chr1205501469AG0.00113CDK18+FALSE
chr1144595943AG0.00050NBPF20+FALSEAluJbSINE,Alu
chr110521103TC0.00788DFFA-TRUEAluYSINE,Alu
chr23592615TC0.00331RNASEH1-TRUEAluSz6SINE,Alu
chr6150047370TC0.00154NUP43-TRUEAluScSINE,Alu
chr439551008TC0.00017UGDH-AS1,SMIM14+,-FALSEAluSzSINE,Alu
chr120978332AT0.00765PINK1-AS,DDOST-FALSEAluYSINE,Alu
chr2242176182GA2.43141E-09HDLBP-FALSE
chr2062598815CT0.00711ZNF512B-FALSE
chr115755550AC0.00969EFHD2+FALSE
chr1488933002CG0.00459PTPN21-FALSE
chr1100361925GA0.00181AGL+FALSE
chr3196771049TC0.00010DLG1-FALSE
chr1145282904AG0.00308NBPF20,NOTCH2NL+FALSEL2aSINE,Alu
chr120982216TA0.00065DDOST-FALSE
chr120977913TG0.00201PINK1,PINK1-AS+,-FALSE
chr1145511962AG0.00091NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr132697085TC0.00366EIF3I+FALSEAluSpSINE,Alu
chr110520902AT0.00032DFFA-FALSE
chr1173864944GT2.40127E-05.FALSE
chr536687341TC0.00930SLC1A3+FALSE
chr116933753GA0.00740NBPF1-FALSEGA-richSINE,Alu
chr1177977067AG0.00030LOC730102-FALSE
chr178414329GA0.00635FUBP1-FALSEA-richSINE,Alu
chr110520378TC0.00145.FALSEAluSx1SINE,Alu
chr1155734530TC0.00214GON4L-TRUE
chr330735330GT0.00402TGFBR2+FALSE
chrX118920477AT0.00529RPL39-FALSE
chr237331627TC0.00044.FALSEAluJbSINE,Alu
chr340577761AG0.00701ZNF621+TRUEAluSzSINE,Alu
chr16282255TC0.00954ICMT-TRUEAluSzSINE,Alu
chr13545198TC3.01160E-05TPRG1L+FALSE
chr119542239TC0.00038LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr133277080CT8.00797E-06YARS-FALSELTR6ASINE,Alu
chr317199207TA0.00075TBC1D5-FALSEA-richSINE,Alu
chr1160112392GA0.00701ATP1A2+FALSEAluSx3SINE,Alu
chr13545200GA0.00381TPRG1L+FALSE
chr237430603TC0.00483CEBPZOS,CEBPZ+,-FALSE
chr11595586TC0.00206CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr1958357268AG0.00099ZNF587B+TRUEAluSx3SINE,Alu
chr1154128838GT0.00062TPM3-FALSE
chr1155217438AT0.00610FAM189B-FALSE
chr12124146569AG0.00013GTF2H3+TRUEAluSq2SINE,Alu
chr7135285707GA0.00084NUP205+FALSE
chr116450928TC0.00113EPHA2-FALSE
chr195362949AT0.00114CNN3-FALSE(A)nSINE,Alu
chr1774560728AG0.00510SNHG16+FALSETHE1BSINE,Alu
chr195362953TC0.00072CNN3-FALSE
chr119542458TC0.00988LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr128661736AG0.00048MED18+TRUEAluSgSINE,Alu
chr123636030AT0.00067HNRNPR-FALSE
chr314986098TC0.00996FGD5-AS1-TRUEFLAM_CSINE,Alu
chr2234775941AG0.00161MSL3P1-FALSE
chr1144931101GA0.00358NBPF20,PDE4DIP+,-FALSE
chr153716416GA0.00967LRP8-FALSE
chr126774224AG0.00349DHDDS+TRUEAluSz6SINE,Alu
chr357612623TC3.38108E-06DENND6A,PDE12+,-FALSE
chr153291434AG0.00108ZYG11B+TRUEAluJrSINE,Alu
chr1777807105CA4.63827E-05CBX4-FALSE
chr738763068TC0.00361.FALSEAluSx3SINE,Alu
chr145120664CT0.00437TMEM53-FALSE
chr237331065TC0.00017.FALSEAluSx1SINE,Alu
chr2109374952AG0.00031RANBP2+FALSE
chr1227574182GC0.00014ARNTL2,ARNTL2-AS1+,-FALSE
chr4113198883GT0.00905TIFA-FALSE
chr2201774209TC0.00534.FALSEAluSzSINE,Alu
chr140214313AG0.00330PPIE+TRUEAluSq2SINE,Alu
chr270452141CA0.00191TIA1-FALSE
chr133149495AG0.00675SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr13730400TC0.00457CEP104-TRUEAluSx3SINE,Alu
chr1248539888CA0.00088PFKM+FALSE
chr116254872CA4.87895E-08SPEN+FALSE
chr552251222GT0.00808.FALSE(GATA)nSINE,Alu
chr373115390CT0.00462PPP4R2+FALSE(AT)nSINE,Alu
chr119543352TC0.00098LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr116861718CT0.00891LOC100132147-FALSE
chr145975498AG9.09033E-05MMACHC+TRUEAluSx4SINE,Alu
chr270506337TC0.00313PCYOX1+FALSE
chr579922263TG0.00913DHFR-FALSEHAL1SINE,Alu
chr16282224TC0.00785ICMT-TRUEAluSzSINE,Alu
chr1101443701AG0.00749SLC30A7+FALSE
chr194995653AC0.00035F3-FALSEAluSxSINE,Alu
chr2174773510TA0.00775SP3-FALSEA-richSINE,Alu
chr1168523338TC0.00817CPT1A-TRUEAluSqSINE,Alu
chr296915238TC0.00510.FALSEAluJrSINE,Alu
chr1145688973AG7.17653E-05NBPF20,NBPF10,RNF115+TRUEAluSc8SINE,Alu
chr59549459AG0.00783SNHG18+FALSE
chr153288894AG0.00066ZYG11B+TRUEAluJoSINE,Alu
chr165297861TC0.00895RAVER2+FALSE
chr191990450AT0.00405CDC7+FALSELFSINE_VertSINE,Alu
chr348894565TA0.00142SLC25A20-FALSE
chr10126677249AT0.00762CTBP2-FALSE
chr2113509977CT0.00197CKAP2L-FALSE
chr11769393TC0.00186PDDC1-TRUEAluSq2SINE,Alu
chr136067817TC1.59583E-06PSMB2-TRUEAluSzSINE,Alu
chr540832553AT0.00121RPL37-FALSE
chr285547772GC0.00871TGOLN2-FALSE
chr11252180TC0.00021CPSF3L-TRUEAluSxSINE,Alu
chr2204162277AG0.00097CYP20A1+TRUEAluSxSINE,Alu
chr286249840TC0.00482LOC90784-TRUEAluJrSINE,Alu
chr1399056476AT0.00535FARP1+FALSE
chr1145375862TC0.00072NBPF20,NBPF10+FALSE
chr1615198598CT0.00494PDXDC1,PKD1P6-NPIPP1,LOC100505915+,-FALSE
chr7117825681AG1.90524E-05LSM8+FALSE
chr1179832838AG0.00018TOR1AIP2-FALSEMLT1LSINE,Alu
chr791742141TC0.00100CYP51A1-FALSEAluSx3SINE,Alu
chr1533064461CT0.00653FMN1-FALSE
chr3197682718TC0.00163IQCG,RPL35A+,-FALSE
chr116890130AC0.00594NBPF1-FALSE
chr4248713AG0.00367ZNF876P+FALSE
chr9133579734AG0.00129EXOSC2+TRUEAluSx3SINE,Alu
chr642854580AG0.00330RPL7L1+TRUEAluScSINE,Alu
chr358306666AG0.00139.FALSEAluSzSINE,Alu
chr2239970718CA0.00244HDAC4-FALSE(AAAAC)nSINE,Alu
chr179110518AG0.00997IFI44L+FALSE
chr1179326847AG0.00846SOAT1+TRUEAluJoSINE,Alu
chr3185646406AT0.00023TRA2B-FALSE
chr1160966351TC0.00034F11R-TRUEAluSgSINE,Alu
chr133149443AG0.00013SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr344692564CG0.00182ZNF35+FALSE
chr644417142AG0.00144CDC5L+TRUEFLAM_CSINE,Alu
chr140537942AC0.00955CAP1+FALSE(A)nSINE,Alu
chr110517485TC0.00040.FALSEAluSx1SINE,Alu
chr1144596446AG0.00124NBPF20+TRUEAluJbSINE,Alu
chr237431681AG0.00436CEBPZOS,CEBPZ+,-FALSEAluScSINE,Alu
chr272405098CA0.00646EXOC6B-FALSE
chr2202032184AG0.00954CFLAR+FALSEAluJoSINE,Alu
chr5122165503AT0.00170SNX2+FALSE(AC)nSINE,Alu
chr1346530764TG0.00385.FALSE
chr1148010952CT0.00393NBPF8-FALSE
chr110517653TC0.00792.FALSEAluSx1SINE,Alu
chr1453242639TC1.43651E-05GNPNAT1-TRUEAluJrSINE,Alu
chr1205739266CT0.00125RAB29-FALSE
chr1183112505TC0.00525LAMC1+FALSE
chr13546128AG0.00703TPRG1L+FALSEAluSzSINE,Alu
chr1168218574AG0.00898.FALSEAluSzSINE,Alu
chr3105295461GA9.74520E-12ALCAM+FALSE
chr136535560AG0.00059.FALSEAluSx1SINE,Alu
chr1220231946TC0.00439RNU5F-1,BPNT1+,-FALSEAluSzSINE,Alu
chr773150511TC0.00414ABHD11-FALSE
chr10121588038AC0.00100INPP5F+FALSE
chr111785234AG0.00339.FALSEAluJrSINE,Alu
chr162579758GA0.00250PATJ+FALSE
chr3156259295TC0.00039SSR3-TRUEAluSq2SINE,Alu
chr1215035081TC0.00951MGP-FALSE
chr310290513CA0.00577TATDN2+FALSE
chr270506338CT0.00026PCYOX1+FALSE
chr116889004CT0.00977NBPF1-FALSE
chr12125512534AG0.00024.FALSE
chr1475203036AG0.00837FCF1+TRUEAluSxSINE,Alu
chr3196670092CG0.00393NCBP2-AS2+FALSE
chr11469546GA0.00331ATAD3A+FALSE
chr1237063504AG0.00900MTR+FALSEL1ME3FSINE,Alu
chr1241796948TC0.00082OPN3,CHML-FALSE
chr933466219AC0.00148NOL6-FALSE
chr510436681GT0.00306MARCH6+FALSE
chr1152884247AG0.00642IVL+FALSE
chr167896025GA5.77574E-06SERBP1-FALSE
chrX2824979TC0.00049ARSD-TRUEAluSx1SINE,Alu
chr299772813AG1.48642E-06LIPT1+TRUEAluSx1SINE,Alu
chr1145283718GA0.00897NBPF20,NOTCH2NL+FALSE
chr339137794TC0.00240WDR48+FALSE
chr1148023067CT0.00772NBPF8-FALSE
chr1256736075CT0.00262STAT2-FALSEAluSpSINE,Alu
chr237331745TC0.00097.FALSEAluJbSINE,Alu
chr182763697CT8.35636E-08SMCHD1+FALSE
chr417802824TC0.00594DCAF16-TRUEAluSzSINE,Alu
chr362282908CT0.00281PTPRG-AS1-FALSE
chr1749042206TC0.00030SPAG9-TRUEAluJbSINE,Alu
chr1148003749TC0.00114NBPF8-TRUEL1MC4SINE,Alu
chr5151041883GA0.00343SPARC-FALSE
chr1990806GA0.00432AGRN+FALSE
chr261277835AG0.00105PEX13+TRUEAluYSINE,Alu
chr1148003752TC0.00015NBPF8-TRUEL1MC4SINE,Alu
chr1180991777TC0.00629STX6-FALSE
chr315112501TC2.98131E-05RBSN-TRUEAluSq2SINE,Alu
chr1227848053AT0.00090PPFIBP1+FALSE
chr3196315260TC0.00102FBXO45+FALSE
chr232535873AG0.00270.FALSEAluJbSINE,Alu
chr4128758152AG0.00198.FALSEAluSxSINE,Alu
chr15102516512GA0.00041WASH3P+FALSE
chr264859679TC0.00824SERTAD2-FALSE
chr344790781TC0.00060KIAA1143-TRUEAluYSINE,Alu
chr6159395409TC0.00136.FALSE
chr1118502684GA0.00682WDR3,SPAG17+,-FALSE
chr193465142TC0.00100NFIC+FALSE
chr2128064448GT0.00637MAP3K2-FALSE(GT)nSINE,Alu
chr1145369589TC0.00128NBPF20,NBPF10+FALSEL1MC4SINE,Alu
chr138326643TC0.00458INPP5B-TRUEAluJrSINE,Alu
chr417803604TC0.00206DCAF16-TRUEAluYSINE,Alu
chr12133298355AG0.00024PGAM5+TRUEAluSpSINE,Alu
chr179356178CA0.00678ADGRL4-FALSE
chr2238673923CA0.00813LRRFIP1+FALSE(CA)nSINE,Alu
chr119934879TC0.00454MINOS1,MINOS1-NBL1,RPS14P3+FALSE
chr1116235277CT0.00396VANGL1+FALSE
chr2197000455TC0.00426STK17B-FALSEAluSzSINE,Alu
chr314986104TC0.00621FGD5-AS1-TRUEFLAM_CSINE,Alu
chr2206987228TC0.00052.FALSEAluSxSINE,Alu
chr5130537006CA0.00020LYRM7+FALSEAluSx4SINE,Alu
chr2134729930AG0.00060IFNAR1+TRUEAluSg7SINE,Alu
chr590074268GA0.00240ADGRV1+FALSE
chr1757279284AG0.00149PRR11+TRUEAluSq2SINE,Alu
chr153288862AG0.00503ZYG11B+TRUEAluJoSINE,Alu
chr225962254AT0.00375ASXL2-FALSE
chr540832551AT0.00394RPL37-FALSE
chr116889633TC0.00217NBPF1-TRUE
chr116889864CA0.00020NBPF1-FALSE
chr425253995CT9.95051E-10PI4K2B+FALSE
chr4177251328CT9.41230E-05SPCS3+FALSE
chr1114940216TG0.00674TRIM33-FALSE(T)nSINE,Alu
chr534906547TC0.00051RAD1-TRUEAluJoSINE,Alu
chrX77084001TC1.05736E-07MAGT1-TRUEAluSzSINE,Alu
chr1227847344TC0.00205ZNF678+FALSE
chr111347152AT0.00401UBIAD1+FALSE
chr119586532AG0.00188MRTO4+TRUEAluSzSINE,Alu
chr16583515TC0.00528NOL9-TRUEAluSqSINE,Alu
chr1256510696AT0.00015RPL41+FALSE
chr7100279138AT0.00741GIGYF1-FALSEA-richSINE,Alu
chr237429627AG0.00027CEBPZOS,CEBPZ+,-FALSEAluSzSINE,Alu
chr1229652587TC0.00732ABCB10-FALSE
chr154231847AC0.00097NDC1-FALSE
chr116889414TC0.00384NBPF1-TRUEL1MC4SINE,Alu
chr1734942575GA0.00374GGNBP2+FALSEA-richSINE,Alu
chr299812447AG0.00525MRPL30+TRUEAluSxSINE,Alu
chr111979814GA0.00697KIAA2013-FALSE
chr1207942427AG0.00822CD46+TRUEAluSg4SINE,Alu
chr143897496GA0.00481SZT2+FALSE
chr237331019TC0.00033.FALSEAluSx1SINE,Alu
chr3124950418TA0.00039ZNF148-FALSE
chr636894337GA0.00607C6orf89+FALSEGA-richSINE,Alu
chr194930345GA0.00223ABCD3+FALSE
chr123636278AT0.00121HNRNPR-FALSE
chr310192798AG0.00722VHL+TRUEAluSx1SINE,Alu
chr119578192GA0.00778MRTO4+FALSE
chr12990912AC0.00244WNK1+FALSE
chr119542621TC1.78455E-05LOC101927895,EMC1+,-FALSEFRAMSINE,Alu
chr164097432CT0.00157PGM1+FALSE
chr2109401283CT0.00039RANBP2+FALSE
chr110518921CT0.00398.FALSEAluSx3SINE,Alu
chr315114385TC0.00146RBSN-TRUEAluYSINE,Alu
chr1765334725TC2.56338E-07PSMD12-TRUEAluSqSINE,Alu
chr71199790GC0.00049ZFAND2A-FALSE
chr229023121GT0.00077PPP1CB+FALSE
chr145975345AG9.37661E-05MMACHC+TRUEAluSg7SINE,Alu
chr1745761109TG0.00018.FALSE
chr2232319524TA0.00245NCL-FALSE

Differential Expression Gene Analysis