RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	117648269	G	A	0.00988		.	FALSE	AluSz6	SINE,Alu
chr1	38463218	G	A	1.86271E-07	FHL3	-	FALSE
chr2	86249961	T	C	0.00292	LOC90784	-	TRUE	AluJr	SINE,Alu
chr19	50412217	C	G	0.00017	IL4I1,NUP62	-	FALSE	(GGT)n	SINE,Alu
chr3	156258389	T	C	0.00179	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	145512937	A	G	1.47906E-06	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	118066459	A	G	0.00788	MAN1A2	+	FALSE
chr1	145509570	A	G	0.00306	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr1	10520684	T	C	0.00842	DFFA	-	TRUE	AluSc8	SINE,Alu
chr19	58420152	C	A	0.00322	ZNF417	-	FALSE
chr1	52520867	T	A	7.48778E-05	TXNDC12	-	FALSE
chr1	120612037	T	G	0.00044	NOTCH2	-	FALSE	(CGC)n	SINE,Alu
chr1	21779925	T	G	0.00860	NBPF3	+	FALSE	ERVL-E-int	SINE,Alu
chr1	16893686	G	C	0.00386	NBPF1	-	FALSE
chr7	38764340	T	C	0.00630	VPS41	-	TRUE	AluSp	SINE,Alu
chr8	30536603	T	C	9.61612E-06	GSR	-	TRUE	AluSp	SINE,Alu
chr1	62380298	G	A	0.00025	PATJ	+	FALSE
chr1	150446028	G	T	0.00624	RPRD2	+	FALSE
chr1	16932429	C	G	0.00823	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	24710405	A	G	0.00246	STPG1	-	FALSE
chr5	180236449	G	C	0.00011	MGAT1	-	FALSE
chr8	62538200	A	T	0.00552	ASPH	-	FALSE
chr6	33384326	A	T	0.00678		.	FALSE
chr3	14986133	T	C	1.90274E-11	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr3	156259229	T	C	0.00225	SSR3	-	TRUE	AluSq2	SINE,Alu
chr1	145688668	A	T	0.00987	NBPF20,NBPF10,RNF115	+	FALSE
chr2	55776561	T	A	0.00092	PPP4R3B	-	FALSE
chr17	5288084	T	A	0.00232	RABEP1	+	FALSE
chr1	156233189	C	T	5.51743E-05	SMG5	-	FALSE
chr1	24086794	G	T	0.00028	TCEB3	+	FALSE	(T)n	SINE,Alu
chr1	160967899	T	C	0.00011	F11R	-	TRUE	AluSp	SINE,Alu
chr1	1309885	A	G	0.00010	AURKAIP1	-	FALSE
chr1	148556726	G	T	0.00758		.	FALSE
chr19	42375585	A	G	0.00022		.	FALSE	AluSx	SINE,Alu
chr1	220231455	T	C	0.00274	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr11	93474585	T	G	0.00531	TAF1D	-	FALSE
chr1	155429590	G	T	0.00356	ASH1L	-	FALSE
chr6	42856924	A	G	2.08684E-05	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	19542311	T	C	0.00682	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr9	139698779	C	G	0.00106	CCDC183,CCDC183-AS1	+,-	FALSE	L2b	SINE,Alu
chr18	2763697	C	T	8.35636E-08	SMCHD1	+	FALSE
chr1	145323668	G	C	0.00241	NBPF20,NBPF10	+	FALSE
chr17	42876730	T	C	0.00024	GJC1	-	TRUE	AluSz6	SINE,Alu
chr1	145369709	A	G	0.00258	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr2	91805833	A	G	1.63980E-13		.	FALSE	MLT1H1	SINE,Alu
chr1	19542679	T	C	0.00738	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr17	57279167	A	G	0.00071	PRR11	+	TRUE	AluSq2	SINE,Alu
chr12	131356731	T	C	2.96756E-07	RAN	+	FALSE	(GGCCGG)n	SINE,Alu
chr8	128944725	G	C	0.00491	PVT1	+	FALSE
chr1	203821865	C	T	0.00222	ZC3H11A	+	FALSE
chr2	238253065	C	T	0.00914	COL6A3	-	FALSE
chr18	10752666	C	T	1.68498E-05	PIEZO2	-	FALSE
chr4	129795660	T	A	0.00454	JADE1	+	FALSE
chr1	190234133	A	C	5.13910E-06	BRINP3	-	FALSE
chr1	25812110	T	C	0.00639	TMEM57	+	FALSE
chr16	69151495	T	A	0.00304	HAS3	+	FALSE	(T)n	SINE,Alu
chr1	59004766	G	T	0.00213	OMA1	-	FALSE
chr13	41635235	C	T	0.00400		.	FALSE
chr1	77759578	A	G	0.00955	AK5	+	FALSE
chr1	161088583	T	G	0.00822	NIT1	+	FALSE
chr2	9770610	A	G	0.00486	YWHAQ	-	FALSE
chr7	19736460	A	G	6.53378E-05	TWISTNB	-	FALSE	MER33	SINE,Alu
chr1	160967848	T	C	0.00200	F11R	-	TRUE	AluSp	SINE,Alu
chr6	3022725	T	C	0.00081	HTATSF1P2	-	TRUE	AluSz	SINE,Alu
chr2	61370704	T	A	0.00747	LOC339803	-	FALSE
chr3	195242526	C	T	3.14972E-05	PPP1R2	-	FALSE
chr1	16060892	C	T	0.00946	PLEKHM2	+	FALSE
chr1	149819554	T	C	0.00137		.	FALSE	MLT1C2	SINE,Alu
chr1	31732677	G	A	0.00030	SNRNP40	-	FALSE	A-rich	SINE,Alu
chr8	41401497	A	G	0.00051	LOC102723729,GINS4	+,-	FALSE	AluSq2	SINE,Alu
chr1	10518733	T	C	0.00050		.	FALSE	AluSx1	SINE,Alu
chr5	122359498	A	C	0.00362	PPIC	-	FALSE	(AC)n	SINE,Alu
chr2	105881486	A	G	0.00042	TGFBRAP1	-	FALSE
chr2	91843471	C	T	0.00105	LOC654342	-	FALSE
chr1	118066459	A	G	0.00496	MAN1A2	+	FALSE
chr1	36299630	A	G	0.00828	AGO4	+	FALSE
chr1	26158907	A	G	0.00061	MTFR1L,AUNIP	+,-	FALSE
chr1	10518052	T	C	7.90759E-05		.	FALSE	AluJr	SINE,Alu
chr1	230416038	G	A	0.00626	GALNT2	+	FALSE
chr7	5568366	A	G	0.00400	ACTB	-	FALSE
chr7	7918285	G	A	0.00255	UMAD1	+	FALSE
chr3	33185037	A	C	0.00144	CRTAP	+	FALSE	L2a	SINE,Alu
chr17	42113064	A	G	0.00014	LSM12	-	FALSE	(A)n	SINE,Alu
chr3	17201882	C	T	0.00259	TBC1D5	-	FALSE
chr1	33149443	A	G	0.00013	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	21544447	G	A	0.00115	ECE1	-	FALSE
chr1	10043363	A	G	0.00509	NMNAT1	+	TRUE	AluSx3	SINE,Alu
chr5	43575020	T	C	8.37337E-06	NNT-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	110566210	T	A	0.00832	AHCYL1	+	FALSE
chr8	146200271	T	C	0.00182	ZNF252P	-	TRUE	AluSc	SINE,Alu
chr1	38423182	G	C	0.00664	SF3A3	-	FALSE	AluJo	SINE,Alu
chr4	57327087	A	G	0.00047	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	39990456	G	A	0.00749	BMP8A,PPIEL	+,-	FALSE	L2b	SINE,Alu
chr5	130538076	A	G	0.00045	LYRM7	+	TRUE	AluSp	SINE,Alu
chr10	126677250	G	T	0.00762	CTBP2	-	FALSE
chr1	89479063	G	A	0.00151	GBP3	-	FALSE
chr1	6282400	T	C	0.00118	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	35646125	C	T	0.00027	SFPQ	-	FALSE
chr6	33377511	T	C	5.31992E-06		.	FALSE	(TG)n	SINE,Alu
chr2	189877303	G	T	0.00824	COL3A1	+	FALSE
chr2	9629955	G	T	0.00866	ADAM17	-	FALSE
chr2	101886749	T	G	0.00534	CNOT11	+	FALSE
chr5	52389815	A	G	0.00486	ITGA2	+	TRUE
chr3	20025663	G	T	0.00612	RAB5A,PP2D1	+,-	FALSE
chr2	55462751	T	A	0.00613	RPS27A	+	FALSE
chr1	16892275	C	T	0.00230	NBPF1	-	FALSE
chr6	13788200	T	C	0.00879	MCUR1	-	TRUE	AluSx	SINE,Alu
chr3	194790434	C	G	0.00705	XXYLT1	-	FALSE
chr1	100489297	G	C	0.00669	SLC35A3	+	FALSE	AluSc	SINE,Alu
chr1	36752811	C	T	0.00000	THRAP3	+	FALSE
chr1	116239368	G	A	5.97604E-05	VANGL1	+	FALSE
chr1	181058313	G	A	0.00651	IER5	+	FALSE
chr1	10517485	T	C	0.00260		.	FALSE	AluSx1	SINE,Alu
chr1	87328401	A	T	0.00946	SEP15	-	FALSE
chr1	144931330	C	T	0.00295	NBPF20,PDE4DIP	+,-	FALSE
chr3	196769982	C	G	0.00131	DLG1	-	FALSE
chr3	42826041	T	G	0.00019	HIGD1A	-	FALSE
chr1	27434251	G	A	0.00504	SLC9A1	-	FALSE
chr1	949472	G	A	2.93477E-10	ISG15	+	FALSE
chr16	10625075	T	C	2.22045E-15	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	145369589	T	C	0.00128	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	63790503	T	C	0.00289	FOXD3	+	FALSE
chr1	89447868	G	T	0.00585	KYAT3,RBMXL1	-	FALSE
chr1	45474230	G	A	0.00012	HECTD3	-	FALSE
chr1	3545196	T	C	0.00035	TPRG1L	+	FALSE
chr1	569874	C	T	0.00072		.	FALSE
chr3	197611125	A	G	0.00948		.	FALSE	AluSx1	SINE,Alu
chr4	73923043	T	C	0.00236	COX18	-	TRUE	AluSz	SINE,Alu
chr15	74319733	A	G	0.00524	PML	+	TRUE	AluJr	SINE,Alu
chr5	150647744	A	G	0.00036	GM2A	+	TRUE	AluSc	SINE,Alu
chr1	202821382	T	C	0.00983		.	FALSE	AluJr	SINE,Alu
chr6	114178850	G	C	0.00045	MARCKS	+	FALSE	(TGCCGC)n	SINE,Alu
chr1	93827764	A	G	0.00056	DR1	+	FALSE
chr4	190883001	C	G	0.00859	FRG1	+	FALSE
chr2	203743821	T	C	0.00880		.	FALSE	AluSx3	SINE,Alu
chr4	39550549	T	C	0.00014	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr1	9664845	C	T	1.14015E-08	TMEM201	+	FALSE
chr1	200375837	T	G	0.00490	ZNF281	-	FALSE	(T)n	SINE,Alu
chr1	121133733	G	A	0.00455	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr1	154554945	A	G	0.00877	ADAR	-	FALSE
chr7	115898442	G	C	2.36867E-05	TES	+	FALSE	AluSx	SINE,Alu
chr22	50745987	C	G	0.00683	PLXNB2	-	FALSE
chr2	206986972	T	C	0.00462		.	FALSE	AluJr	SINE,Alu
chr2	224621887	T	C	0.00373	AP1S3	-	FALSE	AluSc	SINE,Alu
chr1	1595540	T	C	0.00048	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr3	196659884	G	T	0.00217	SENP5	+	FALSE
chr3	195243012	A	C	0.00128	PPP1R2	-	FALSE
chr1	10517306	T	C	0.00102		.	FALSE	AluJr	SINE,Alu
chr14	19686683	G	A	0.00021	DUXAP10	+	FALSE
chr3	15113656	T	C	1.73787E-06	RBSN	-	TRUE	AluSz6	SINE,Alu
chr2	37331525	T	C	0.00479		.	FALSE	AluJb	SINE,Alu
chr3	46007823	G	T	6.71801E-06	FYCO1	-	FALSE
chr14	75202950	A	G	0.00307	FCF1	+	TRUE	AluSx	SINE,Alu
chr1	17248500	A	G	0.00866	CROCC	+	FALSE
chr1	1419768	A	G	0.00189	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	68940887	T	G	0.00293	DEPDC1	-	FALSE	MIR	SINE,Alu
chr3	195961254	C	T	0.00119		.	FALSE
chr19	45406537	T	C	0.00278	TOMM40	+	FALSE
chr1	19586520	A	G	6.58771E-06	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	145369007	T	G	0.00703	NBPF20,NBPF10	+	FALSE
chr1	24151858	C	T	0.00104	HMGCL	-	FALSE
chr6	31379931	G	A	0.00093		.	FALSE
chr1	9788153	G	A	0.00198	PIK3CD	+	FALSE	AluSx	SINE,Alu
chr15	63616881	G	A	0.00026	CA12	-	FALSE
chr4	57326875	A	G	1.03861E-05	PAICS	+	TRUE	AluSx1	SINE,Alu
chr2	64863970	C	T	9.52027E-09	SERTAD2	-	FALSE
chr2	99813015	A	G	0.00235	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	16913612	G	A	0.00145	NBPF1	-	FALSE
chr2	202032184	A	G	0.00954	CFLAR	+	FALSE	AluJo	SINE,Alu
chr1	53289759	A	G	0.00582	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	184762524	T	C	0.00471	FAM129A	-	TRUE	AluSz	SINE,Alu
chr1	205738302	G	A	0.00661	RAB29	-	FALSE
chr1	148004475	C	G	7.81276E-06	NBPF8	-	FALSE
chr1	27992799	T	A	0.00014	IFI6	-	FALSE	FAM	SINE,Alu
chr4	39550967	T	C	2.19217E-06	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	52381350	T	G	4.39398E-08	RAB3B	-	FALSE
chr1	9990314	T	A	0.00017	LZIC	-	FALSE
chr1	16893841	C	T	0.00272	NBPF1	-	FALSE
chrX	118672561	T	C	2.49155E-08	CXorf56	-	TRUE	AluSx	SINE,Alu
chr1	117078729	A	G	0.00983	CD58	-	FALSE
chr1	204524400	A	G	0.00029	MDM4	+	TRUE	AluY	SINE,Alu
chr1	176132119	G	C	0.00134	RFWD2	-	FALSE	L3b	SINE,Alu
chr16	10623660	T	C	0.00074	EMP2	-	TRUE	AluSp	SINE,Alu
chr2	11318235	G	C	0.00911	PQLC3	+	FALSE
chr1	54493259	T	C	0.00203	TMEM59	-	TRUE	AluSz6	SINE,Alu
chr1	246714587	G	A	0.00150	TFB2M	-	FALSE
chr1	16913677	T	C	0.00638	NBPF1	-	FALSE
chr1	16889575	T	C	0.00467	NBPF1	-	TRUE
chr1	22161275	G	A	0.00600	HSPG2	-	FALSE
chr1	16932144	A	C	1.90883E-05	NBPF1	-	FALSE
chr4	6304286	C	T	0.00054	WFS1	+	FALSE
chr19	44418680	G	C	0.00066	ZNF45	-	FALSE
chr1	23689522	G	T	0.00570	ZNF436	-	FALSE
chr3	48787684	T	C	0.00494	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr1	20978304	T	A	0.00018	PINK1-AS,DDOST	-	FALSE	AluY	SINE,Alu
chr1	16889014	C	T	0.00722	NBPF1	-	FALSE
chr7	100957852	T	C	1.09184E-06	LOC101927746,IFT22	+,-	FALSE	MADE1	SINE,Alu
chr2	1636938	C	T	0.00072	PXDN	-	FALSE	(T)n	SINE,Alu
chr11	76733946	A	G	0.00725	ACER3	+	FALSE	A-rich	SINE,Alu
chr7	29962665	C	T	0.00059	SCRN1	-	FALSE
chr14	74388908	T	C	0.00835	ZNF410	+	FALSE
chr1	184762627	T	C	0.00416	FAM129A	-	TRUE	AluSz	SINE,Alu
chr1	59121768	G	C	0.00196	MYSM1	-	FALSE
chr1	40213412	A	G	0.00235	PPIE	+	TRUE	AluSx3	SINE,Alu
chr2	203741065	T	C	2.92684E-06		.	FALSE
chr1	19586501	A	G	2.56701E-06	MRTO4	+	TRUE	AluSz	SINE,Alu
chr3	17200677	T	G	0.00371	TBC1D5	-	FALSE
chr1	54691922	T	A	0.00415	SSBP3	-	FALSE
chr17	76117147	G	A	0.00606	TMC6	-	FALSE
chr4	17802920	T	C	0.00805	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	10520331	C	T	0.00280		.	FALSE	AluSx1	SINE,Alu
chr1	47685593	A	C	0.00891	TAL1	-	FALSE	(CCACCC)n	SINE,Alu
chr3	176739158	C	A	0.00612	TBL1XR1	-	FALSE
chr7	65618870	A	G	0.00097	CRCP	+	TRUE	AluSx3	SINE,Alu
chr17	65334758	T	C	1.31160E-05	PSMD12	-	TRUE	AluSq	SINE,Alu
chr2	46852033	A	G	0.00543	CRIPT	+	FALSE
chr12	56510698	C	G	0.00019	RPL41	+	FALSE
chr1	19586135	C	T	0.00063	MRTO4	+	FALSE
chr1	175126524	T	C	0.00901	KIAA0040	-	FALSE
chr1	92946618	A	G	0.00062	GFI1	-	FALSE
chr5	125961426	A	G	0.00434	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	161559407	A	G	0.00237	FCGR2C	+	FALSE
chr13	50487353	T	C	0.00538	SPRYD7	-	TRUE	AluSg	SINE,Alu
chr4	68483513	G	A	3.54156E-05	UBA6	-	FALSE
chr15	41591021	A	G	0.00427	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr3	15113694	T	C	0.00622	RBSN	-	TRUE	AluSz6	SINE,Alu
chr5	115166350	T	C	0.00148	ATG12	-	TRUE	AluJr	SINE,Alu
chr17	79476999	G	T	6.09622E-06	ACTG1	-	FALSE
chr3	195395399	G	A	0.00556	SDHAP2	+	FALSE
chr3	179117280	T	C	0.00624	GNB4	-	TRUE	AluSz	SINE,Alu
chr1	16958064	A	G	0.00240		.	FALSE
chr4	128958127	A	G	0.00556	ABHD18	+	TRUE	AluSx3	SINE,Alu
chr1	28859264	T	G	0.00030	RCC1	+	FALSE
chr9	19376249	G	T	0.00658		.	FALSE
chr4	17802956	T	C	0.00480	DCAF16	-	TRUE	AluSz	SINE,Alu
chr11	68523567	T	C	0.00079	CPT1A	-	TRUE	AluSq	SINE,Alu
chr1	26144435	C	G	0.00131	SEPN1	+	FALSE
chr5	125962344	A	G	0.00101	PHAX	+	TRUE	AluSc	SINE,Alu
chr5	37290335	T	C	1.49367E-06		.	FALSE	AluSz	SINE,Alu
chr1	70696395	A	T	0.00364	SRSF11	+	FALSE
chr13	21547673	G	A	0.00974	LATS2	-	FALSE	(TG)n	SINE,Alu
chr1	15832543	T	C	0.00553	CASP9	-	FALSE
chr1	10520378	T	C	0.00115		.	FALSE	AluSx1	SINE,Alu
chr3	44791554	T	C	7.29341E-07	KIAA1143	-	FALSE	AluJr	SINE,Alu
chr1	27205634	T	C	0.00025		.	FALSE	FLAM_A	SINE,Alu
chr6	29910557	T	A	0.00196		.	FALSE
chr4	39552022	T	C	0.00015	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr5	133738270	T	C	5.55380E-10	CDKN2AIPNL	-	TRUE	FRAM	SINE,Alu
chr1	10517672	T	C	0.00070		.	FALSE	AluSx1	SINE,Alu
chr1	110136321	T	A	0.00721	GNAI3	+	FALSE
chr1	220323448	C	T	0.00986	RAB3GAP2	-	FALSE
chr1	27678721	A	G	0.00030	SYTL1	+	TRUE	AluSx1	SINE,Alu
chr1	53708530	T	C	9.40494E-05	LRP8	-	FALSE	(TA)n	SINE,Alu
chr12	125513906	C	A	0.00464		.	FALSE	AluSx1	SINE,Alu
chr2	3504687	A	G	0.00755	ADI1	-	FALSE
chr4	153898736	A	G	0.00574	FHDC1	+	FALSE	AluJb	SINE,Alu
chr6	42855967	A	G	0.00151	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr3	33909025	A	T	0.00796	PDCD6IP	+	FALSE
chr3	15114759	G	A	0.00595	RBSN	-	FALSE
chr1	16952377	C	T	0.00056	CROCCP2	-	FALSE
chr2	74349080	A	G	0.00094		.	FALSE	AluSz	SINE,Alu
chr1	39317318	C	A	1.55431E-15	RRAGC	-	FALSE
chr1	3730400	T	C	0.00800	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	53289759	A	G	0.00383	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr4	10076860	G	A	1.69987E-09	WDR1	-	FALSE
chr1	20976759	C	T	2.31016E-05	PINK1,PINK1-AS	+,-	FALSE

RBP	RBM34
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR560AYQ
Platform	HiSeq
Pubmed ID	32252787

RBM34 - Target Gene Network