Dataset Overview
RBPSRSF7
Knock-MethodshRNA
RBP FamilyRRM_1
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR464ADT
PlatformHiSeq
Pubmed ID32252787

SRSF7 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of SRSF7
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of SRSF7


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr1243289448GA0.00036CEP170-FALSE
chr12133298019AG2.77684E-05PGAM5+TRUEAluJoSINE,Alu
chr1143189076GA0.00048LOC102723769-FALSE
chr642856330AG2.22045E-16RPL7L1+TRUE
chr1075009585TC2.45347E-10DNAJC9-AS1,MRPS16+,-FALSEAluScSINE,Alu
chr5145666114GT0.00766RBM27+FALSE
chr2203742141TC0.00044.FALSEAluJbSINE,Alu
chr161922059CA0.00132NFIA+FALSE(A)nSINE,Alu
chr1205738843CT0.00072RAB29-FALSEAluSz6SINE,Alu
chr194335335GT0.00425DNTTIP2-FALSE
chr1114940230TG0.00413TRIM33-FALSE(T)nSINE,Alu
chr349315576TC0.00191USP4-FALSE
chr138280611GT0.00670MTF1-FALSE(T)nSINE,Alu
chr1474524774TC0.00906BBOF1,ALDH6A1+,-FALSEAluSc8SINE,Alu
chr165897981GA0.00025LEPR,LEPROT+FALSE
chr1109865630CT0.00647SORT1-FALSE
chr237331560TC0.00040.FALSEAluJbSINE,Alu
chr237330144TG0.00478.FALSE
chr110440643AG0.00055KIF1B+TRUEAluSxSINE,Alu
chr174928416AG0.00941KIF1C+TRUEAluSzSINE,Alu
chr2128952015AG0.00086UGGT1+TRUEAluSx1SINE,Alu
chr1113213004GT0.00206CAPZA1+FALSE
chr1593198678TC0.00064FAM174B-FALSE(GCCGCT)nSINE,Alu
chr120976075TC0.00135PINK1,PINK1-AS+,-FALSEAluSzSINE,Alu
chr136068295TC0.00910PSMB2-TRUEAluScSINE,Alu
chr1145511797TG0.00894NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSE(T)nSINE,Alu
chr1230415244TC0.00780GALNT2+FALSE
chr1179852074TC0.00309TOR1AIP1+FALSE
chr136024788CT2.88658E-15NCDN+FALSE
chr136068231TC0.00022PSMB2-TRUEAluScSINE,Alu
chr170696606CA0.00362SRSF11+FALSE
chr2042933642TC0.00275FITM2-TRUEAluJoSINE,Alu
chr1109476363AG0.00172GPSM2,CLCC1+,-FALSE
chr185785550CA0.00134DDAH1-FALSE
chr19645101CT0.00726.FALSE(ATATTC)nSINE,Alu
chr313670508GA0.00017FBLN2+FALSE
chr3156259340TC0.00070SSR3-TRUEAluSq2SINE,Alu
chr1746024807CT0.00295PNPO+FALSE
chr3181430454GA0.00577SOX2-OT,SOX2+FALSE
chr919373160AG0.00404DENND4C+FALSEMADE1SINE,Alu
chr178414329GA0.00922FUBP1-FALSEA-richSINE,Alu
chr342643425GA0.00482NKTR+FALSEL2aSINE,Alu
chr17737792CG8.96820E-06CAMTA1+FALSE
chr1296259951GA0.00328SNRPF+FALSE
chr8143744556TC0.00586JRK-TRUEAluJrSINE,Alu
chr19663444CT0.00140TMEM201+FALSE
chr2240954005CA0.00021NDUFA10-FALSE
chr1015120179TC3.12210E-06ACBD7-FALSEL1PA7SINE,Alu
chr2188330198CA0.00091TFPI-FALSEAluJbSINE,Alu
chr1214529320TG0.00365PTPN14-FALSEAluJbSINE,Alu
chr110520672TC0.00584DFFA-TRUEAluSc8SINE,Alu
chr1918477761AG0.00461PGPEP1+TRUEAluJbSINE,Alu
chr136068227TC0.00398PSMB2-TRUEAluScSINE,Alu
chrX54587249AG0.00769GNL3L+TRUEAluSq2SINE,Alu
chr110520296TC0.00108.FALSEAluSxSINE,Alu
chr2204300093AC0.00105RAPH1-FALSEFLAM_CSINE,Alu
chr1352602919AC0.00117ALG11,UTP14C+FALSE
chr72650926GA0.00306IQCE+FALSE
chr9136209397GC0.00709MED22-FALSE
chr12133298423AG2.89213E-13PGAM5+TRUEAluSpSINE,Alu
chr233812352AG0.00223FAM98A-FALSE
chr590074268GA0.00240ADGRV1+FALSE
chr353265957TC0.00493TKT-FALSE
chr1142804438GT0.00618.FALSE
chrX123046757AG0.00535XIAP+TRUEAluSzSINE,Alu
chr3196659884GT0.00217SENP5+FALSE
chr1179326315AG0.00187SOAT1+TRUE
chr167874859TC0.00374SERBP1-TRUEAluSxSINE,Alu
chr12133635613TC0.00805.FALSE
chr1155582104TA0.00099MSTO1+FALSE
chr4155457601TC0.00423PLRG1-FALSE
chr2198572076AC0.00532MARS2+FALSE
chr1144606963GT0.00965NBPF20+FALSE
chr1688789700CT0.00703PIEZO1-FALSE
chr6111591610AG0.00105.FALSEFLAM_ASINE,Alu
chr19644558AG0.00644.FALSEAluSxSINE,Alu
chr344791554TC7.29341E-07KIAA1143-FALSEAluJrSINE,Alu
chr1201846634CA0.00852IPO9+FALSE(CA)nSINE,Alu
chr299812450AG7.07141E-05MRPL30+TRUEAluSxSINE,Alu
chr1171558516CT4.87297E-05PRRC2C+FALSE
chr1071909957GT0.00853.FALSE
chr135648711AC0.00377SFPQ-FALSE
chr3196080624TC0.00795UBXN7-TRUEAluSxSINE,Alu
chr6150046603TC0.00763NUP43-TRUEAluSq2SINE,Alu
chr1779780692TC0.00116MCRIP1-TRUE
chr110517526TC0.00364.FALSEAluSx1SINE,Alu
chr16282371TC0.00897ICMT-TRUEAluSzSINE,Alu
chr9125609938AT0.00904.FALSE
chr456236480TA0.00967SRD5A3,SRD5A3-AS1+,-FALSE
chr110520505TC0.00011.FALSEAluSx1SINE,Alu
chr110519947TC0.00323.FALSEAluJrSINE,Alu
chr1779674375CT0.00129MRPL12+FALSE
chr3160219829CT0.00654KPNA4-FALSE(TA)nSINE,Alu
chr330735330GT0.00401TGFBR2+FALSE
chr1688709698CT0.00330CYBA-FALSE
chr2201676441GA0.00140LOC101927795,BZW1+,-FALSE
chr7128142691AG0.00017METTL2B+TRUEAluSx1SINE,Alu
chr1148023637CT0.00014NBPF8-FALSE
chr153289790CT0.00281ZYG11B+FALSEAluSzSINE,Alu
chr135658211GT1.28982E-07SFPQ-FALSE
chr779848334GT0.00158GNAI1+FALSE
chr1089005496TG0.00138NUTM2A-AS1-FALSEMSTB1SINE,Alu
chr1113001409CT2.24539E-06CTTNBP2NL+FALSEAluJrSINE,Alu
chr299812864AG0.00458MRPL30+TRUEAluJbSINE,Alu
chr11683565GA0.00552NADK-FALSE
chr4104062223CT0.00750CENPE-FALSE
chr568936027GA0.00868.FALSE
chr744618448AG0.00962TMED4-FALSEAluSq2SINE,Alu
chr12133297904AG8.99170E-13PGAM5+TRUEAluJoSINE,Alu
chr189570148AG0.00084.FALSE
chr12125269475TC0.00184SCARB1-FALSE
chr3194789663TC0.00754XXYLT1-FALSEMARNASINE,Alu
chr286249961TC0.00067LOC90784-TRUEAluJrSINE,Alu
chr110520715TC0.00119DFFA-TRUEAluSc8SINE,Alu
chr133071146AG0.00899ZBTB8A+TRUEAluSx1SINE,Alu
chr3196659892TG0.00620SENP5+FALSEAluSzSINE,Alu
chr1256510697GA0.00989RPL41+FALSE
chr5151041886TG0.00176SPARC-FALSE
chr119542458TC0.00113LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1168218735AG0.00924.FALSEAluSzSINE,Alu
chr1610625058TC2.66942E-12EMP2-TRUEAluSx3SINE,Alu
chr1523283141CA0.00056HERC2P2-FALSE
chr261277775AG0.00113PEX13+TRUEAluYSINE,Alu
chr16283305TC0.00496ICMT-TRUEAluSx3SINE,Alu
chr12133298339AG1.45756E-07PGAM5+TRUEAluSpSINE,Alu
chr119542310TC0.00112LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1153917621GC0.00020DENND4B-FALSE
chr315115284GA0.00305RBSN-FALSE
chr132833540TC0.00381BSDC1-TRUE
chr1146628742TG0.00102PRKAB2-FALSE
chr5154194456GC0.00831LARP1+FALSE
chr4120979178TC0.00433.FALSEAluSg4SINE,Alu
chr1610623666TC1.68352E-07EMP2-TRUEAluSpSINE,Alu
chr72473753CT0.00806CHST12+FALSE(CCGC)nSINE,Alu
chr534189578TC0.00378.FALSE
chr110519946TC0.00578.FALSEAluJrSINE,Alu
chr2272203CT0.00064ACP1+FALSE
chr2134729930AG0.00060IFNAR1+TRUEAluSg7SINE,Alu
chr11477244TC0.00365SSU72-FALSE
chr6143382534CT0.00252AIG1+FALSE
chr1249075983CG0.00321KANSL2-FALSE
chr19160900TC0.00256.FALSEAluJbSINE,Alu
chr340578941AG0.00293ZNF621+TRUEAluJrSINE,Alu
chr3195243012AC0.00054PPP1R2-FALSE
chr1169768080CA0.00980C1orf112+FALSE
chr144171144TA0.00108KDM4A-AS1,KDM4A+,-FALSE
chr128834154GT0.00012SNHG3,RCC1+FALSEAluSgSINE,Alu
chr642855057AG0.00034RPL7L1+TRUEAluSpSINE,Alu
chr653363500GT0.00684GCLC-FALSE
chr388101339TC0.00531CGGBP1-FALSE
chr2242512159AG0.00243BOK+FALSE
chr6150047362TC0.00076NUP43-TRUEAluScSINE,Alu
chr2206987738TC0.00859.FALSEAluJbSINE,Alu
chr118707395CA9.51875E-07RPL27A+FALSE
chr137958451CG0.00882MEAF6-FALSEMER5BSINE,Alu
chr16282587TC0.00221ICMT-TRUE
chr296918126GT0.00821TMEM127-FALSE
chr314986110TC0.00691FGD5-AS1-TRUEFLAM_CSINE,Alu
chr373115786TC3.88619E-05PPP4R2+FALSE
chr237075013TA0.00119STRN-FALSE
chr128261662AG0.01000SMPDL3B+FALSE
chr254887287CT7.50624E-05SPTBN1+FALSE
chr1145513125AG0.00274NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr274332840GC4.77205E-06TET3+FALSE
chr128835937AG0.00181SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr2113334241AG0.00388POLR1B+TRUE
chr11337736CG0.00012MRPL20-FALSE
chr1165179815CA0.00447FRMD8+FALSE
chr2172179003TC0.00192METTL8-TRUEAluYSINE,Alu
chr3189712010GA1.42873E-07P3H2-FALSE
chr1179044206AG0.00015FAM20B+TRUEAluSxSINE,Alu
chr154692358GA0.00195SSBP3-FALSE
chr2216148871TG0.00071.FALSETigger1SINE,Alu
chr122854702CT4.66415E-11ZBTB40+FALSE
chr42940164TC2.22609E-06NOP14-AS1,NOP14+,-FALSEAluSpSINE,Alu
chr12120898661AG2.17580E-05GATC+TRUEAluYSINE,Alu
chr268402794TG0.00630PNO1+FALSE
chr110520819TC0.00022DFFA-TRUEAluSc8SINE,Alu
chr11126147713CG0.00384FOXRED1+FALSE
chr123636031TA0.00965HNRNPR-FALSE
chr1114306372AG0.00443RSBN1-FALSE
chr136770950AG0.00118THRAP3+FALSE
chr136024788CT5.60663E-14NCDN+FALSE
chr2234749258TC0.00710HJURP-FALSE
chr110519936TC0.00072.FALSEAluJrSINE,Alu
chr1201845899GT1.72907E-05IPO9+FALSE
chr1541593268AG0.00084.FALSEAluSz6SINE,Alu
chr1146650289CT0.00024PDIA3P1+FALSE
chr631321916AG0.00000.FALSE
chr1109747437AG0.00104KIAA1324+TRUEAluJr4SINE,Alu
chr2113509977CT0.00197CKAP2L-FALSE
chr152816674TC1.79626E-07CC2D1B-TRUEAluSx1SINE,Alu
chr1204521616AG0.00455MDM4+TRUEAluSgSINE,Alu
chr5125961463AG0.00323PHAX+TRUEAluSz6SINE,Alu
chr23605906CA0.00982RNASEH1-FALSE
chr1155851620AG6.99218E-05SYT11+TRUEAluSq2SINE,Alu
chr1179042697AG0.00092FAM20B+TRUEAluSx1SINE,Alu
chr8144681777GT0.00383TIGD5+FALSE
chr1205687213TA0.00950NUCKS1-FALSE
chr764435677GA0.00366ZNF117-FALSE
chr398518158AT1.44910E-06DCBLD2-FALSE
chr2025427801AG0.00300GINS1+TRUEAluSzSINE,Alu
chr124296708AG0.00512.FALSE
chr1350487353TC0.00538SPRYD7-TRUEAluSgSINE,Alu
chr123636278AT0.00121HNRNPR-FALSE
chr136067784TC1.68158E-09PSMB2-TRUEAluSzSINE,Alu
chr2128950548AG0.00589UGGT1+TRUEAluScSINE,Alu
chr2206986972TC0.00462.FALSEAluJrSINE,Alu
chr5118731273AC0.00843.FALSE
chr16282301TC0.00480ICMT-TRUEAluSzSINE,Alu
chr110221287AG0.00961UBE4B+FALSE
chr128824041TA0.00872PHACTR4+FALSEAluSxSINE,Alu
chr110517276TC0.00039.FALSEAluJrSINE,Alu
chr3169810385CT0.00621PHC3-FALSE
chr1214557685CA0.00205PTPN14-FALSE
chr187573331TC0.00699HS2ST1+FALSE(AT)nSINE,Alu
chr128661653AG0.00483MED18+TRUEAluSgSINE,Alu
chr264479079GA0.00452LOC100507006+FALSE
chr122109952GA0.00889.FALSE
chr119953124GA0.00106MINOS1,MINOS1-NBL1+FALSE
chr4120979673TC0.00074.FALSEAluSgSINE,Alu
chr153289686AG0.00222ZYG11B+TRUEAluSzSINE,Alu
chr42841893AG0.00974SH3BP2+TRUEAluJbSINE,Alu
chr1206566195CT0.00052SRGAP2+FALSE
chr729962665CT0.00059SCRN1-FALSE
chr126299050GA0.00110PAFAH2-FALSE
chr16683582CA0.00152PHF13+FALSE
chr613790822TC0.00885MCUR1-TRUEAluSx1SINE,Alu
chr1115259768TC0.00156CSDE1-FALSE
chr6149912555GA0.00551.FALSE
chr127202845TC0.00034.FALSEAluSq2SINE,Alu
chr1118502731TG0.00155WDR3,SPAG17+,-FALSE
chr483812317CA0.00553SEC31A-FALSE
chr132638096CT0.00857KPNA6+FALSE
chr237331627TC0.00910.FALSEAluJbSINE,Alu
chr136032276AT0.00012NCDN+FALSE(CA)nSINE,Alu
chr119543352TC0.00086LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr132373831TG0.00252PTP4A2-FALSE(T)nSINE,Alu
chr1089623860CG0.00071PTEN+FALSE(CGG)nSINE,Alu
chr110517688TC0.00630.FALSEAluSx1SINE,Alu
chr1206566904TC0.00322SRGAP2+FALSE
chr1165877671TC0.00376UCK2+FALSE(T)nSINE,Alu
chr534906547TC0.00051RAD1-TRUEAluJoSINE,Alu
chr1120612194CG0.00561NOTCH2-FALSE(CCG)nSINE,Alu
chr29770610AG0.00486YWHAQ-FALSE
chr154571380AG0.00332TCEANC2+TRUEAluScSINE,Alu
chr155224131TC0.00169PARS2-FALSE
chr350150360AG0.00651RBM5+TRUEAluSxSINE,Alu
chr720178562TC1.84789E-06MACC1,LOC101927668-TRUEAluYSINE,Alu
chr1753470462CT0.00230MMD-FALSE
chr1157092835GA0.00595.FALSE
chr42931174TC0.00211ADD1+FALSE
chr3124950419CA0.00060ZNF148-FALSE
chr1912742509AG0.00717.FALSEAluSxSINE,Alu
chr126755455AG0.00342LIN28A+TRUEAluScSINE,Alu
chr154355105AG0.00325YIPF1-FALSEMIRbSINE,Alu
chr1675479910TC0.00026TMEM170A-TRUEAluSg4SINE,Alu
chr9137330713TG0.00021RXRA+FALSE
chr342591956GA0.00503SEC22C-FALSE
chr112071680AG0.00127MFN2+FALSE
chr2209180073CA0.00478PIKFYVE+FALSE
chr116478619GA0.00656TRIM3-FALSE
chr3196769982CG0.00131DLG1-FALSE
chr237429627AG0.00027CEBPZOS,CEBPZ+,-FALSEAluSzSINE,Alu
chr110517276TC0.00604.FALSEAluJrSINE,Alu
chr167895926AG0.00705SERBP1-FALSE
chr4120979770TC0.00437.FALSEAluSgSINE,Alu
chr299813020AG0.00015MRPL30+TRUEAluJbSINE,Alu
chr237328027TC0.00026.FALSE
chr312641718GA0.00091RAF1-FALSE
chr1149819554TC0.00137.FALSEMLT1C2SINE,Alu
chr237506939AG0.00119PRKD3-FALSE
chr838829839AG0.00184PLEKHA2+TRUEAluJr4SINE,Alu
chr1120163248GA4.97770E-06ZNF697-FALSE
chr1214524531TC0.00753PTPN14-TRUEAluSgSINE,Alu
chr237327666TC0.00028.FALSE
chr155207988GA0.00914MROH7-TTC4,TTC4+FALSE
chr1144922523CT0.00566NBPF20,PDE4DIP+,-FALSE
chr116889639TC0.00524NBPF1-TRUE
chr128836973AG0.00289SNHG3,RCC1+TRUEAluScSINE,Alu
chr345722055AG0.00835LIMD1,LIMD1-AS1+,-FALSEAluJbSINE,Alu
chr441956313AG0.00710TMEM33+FALSE
chr6150047370TC0.00084NUP43-TRUEAluScSINE,Alu
chr1913883923AG0.00493MRI1+TRUEAluSzSINE,Alu
chr1776799795GA0.00363USP36-FALSE
chr1114306372AG0.00243RSBN1-FALSE
chr42940265TC4.71601E-06NOP14-AS1,NOP14+,-FALSEAluJoSINE,Alu
chr110518831TC0.00410.FALSEAluSx1SINE,Alu
chr1144930940TC0.00181NBPF20,PDE4DIP+,-FALSE
chr7156764350GC0.00415NOM1+FALSE
chr12160436CT0.00488SKI+FALSE(CGC)nSINE,Alu
chr146828460CT0.00393NSUN4+FALSE
chr358112440AG8.00661E-07FLNB+FALSE
chr2176790393CT0.00282LNPK-FALSEAluSpSINE,Alu
chr1541590943AG0.00561OIP5-AS1+TRUEAluSx1SINE,Alu
chr1742880190TC0.00284GJC1-TRUEAluJbSINE,Alu
chr232535747AG0.00250.FALSEAluJbSINE,Alu
chr1120101744CA0.00540NAV2+FALSE
chr42940164TC0.00115NOP14-AS1,NOP14+,-FALSEAluSpSINE,Alu
chr116933110TC0.00143NBPF1-FALSEL1MC2SINE,Alu
chr1165877575AC0.00675UCK2+FALSE
chr1159946779GA0.00019LINC01133+FALSE(GAAA)nSINE,Alu
chr2134728175AG6.62284E-07IFNAR1+TRUEAluScSINE,Alu

Differential Expression Gene Analysis