RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	46829013	A	G	0.00360	NSUN4	+	FALSE
chr5	176026131	A	T	0.00979	GPRIN1	-	FALSE
chr4	17803604	T	C	0.00174	DCAF16	-	TRUE	AluY	SINE,Alu
chr1	225977968	C	T	0.00490	SRP9	+	FALSE
chr1	47840953	A	G	0.00404	CMPK1	+	FALSE
chr2	99772813	A	G	1.48642E-06	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr3	46007825	T	C	4.58354E-06	FYCO1	-	FALSE
chr1	150937959	A	G	3.24660E-05	CERS2	-	FALSE	G-rich	SINE,Alu
chr3	72426071	T	A	0.00169	RYBP	-	FALSE	(T)n	SINE,Alu
chr1	52817432	T	C	0.00518	CC2D1B	-	TRUE	AluSg4	SINE,Alu
chr1	8412989	A	G	0.00225	RERE	-	FALSE
chr5	151041877	C	A	1.29615E-05	SPARC	-	FALSE
chr8	11700737	T	C	0.00126	CTSB	-	TRUE	AluSg	SINE,Alu
chr1	204526795	A	G	0.00199	MDM4	+	TRUE	AluSx	SINE,Alu
chr17	3561396	C	T	0.00322	CTNS	+	FALSE
chr4	128995640	G	A	0.00567	LARP1B	+	FALSE
chr3	32524229	G	T	0.00359	CMTM6	-	FALSE
chr3	57542173	C	T	0.00020	PDE12	+	FALSE
chr10	75009591	T	C	8.39163E-08	DNAJC9-AS1,MRPS16	+,-	FALSE	AluSc	SINE,Alu
chr1	61922501	A	C	0.00231	NFIA	+	FALSE	A-rich	SINE,Alu
chr6	34249357	T	A	0.00373		.	FALSE
chr6	153292179	T	C	0.00755	FBXO5	-	FALSE
chr6	7289958	C	G	0.00893	SSR1	-	FALSE
chr3	10005159	A	T	0.00939	EMC3	-	FALSE	(AT)n	SINE,Alu
chr1	46830257	C	T	0.00208	NSUN4	+	FALSE	AluSx1	SINE,Alu
chr5	126889370	C	T	0.00713	PRRC1	+	FALSE
chr8	8099397	T	C	0.00975	FAM86B3P	+	FALSE
chr5	52393421	C	T	0.00144	MOCS2	-	FALSE	L1MA9	SINE,Alu
chr17	38788606	G	T	1.11022E-15	SMARCE1	-	FALSE
chr7	43665371	A	T	0.00430	STK17A,COA1	+,-	FALSE	(AG)n	SINE,Alu
chr1	38174583	A	C	0.00644	CDCA8	+	FALSE
chr1	53712727	C	T	0.00313	LRP8	-	FALSE
chr3	20025661	C	T	4.83976E-05	RAB5A,PP2D1	+,-	FALSE
chr1	158057633	C	G	0.00031	KIRREL	+	FALSE
chr3	45266555	T	C	1.22536E-07	TMEM158	-	FALSE
chr16	11931210	G	T	0.00292	RSL1D1	-	FALSE
chr1	32687472	G	A	0.00877	TMEM234,EIF3I	+,-	FALSE
chr5	34189578	T	C	0.00378		.	FALSE
chr2	128950515	A	G	0.00208	UGGT1	+	TRUE	AluSc	SINE,Alu
chr19	8005999	T	C	0.00027	TIMM44	-	FALSE
chr3	195963398	A	G	0.00271		.	FALSE
chr19	57816261	A	G	0.00156		.	FALSE	AluY	SINE,Alu
chr1	32687473	T	G	0.00892	TMEM234,EIF3I	+,-	FALSE
chr8	48889659	A	G	1.71928E-05	MCM4	+	TRUE	AluSx3	SINE,Alu
chr2	206985727	C	T	0.00786		.	FALSE	MIRc	SINE,Alu
chr16	71681515	A	G	0.00308	PHLPP2	-	FALSE
chr4	39550558	T	C	0.00441	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr1	46076599	A	G	0.00116	NASP	+	TRUE	AluSx	SINE,Alu
chr15	41593308	A	G	0.00619		.	FALSE	AluSz6	SINE,Alu
chr2	3592638	T	C	0.00941	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr1	16160968	C	T	0.00524	FLJ37453	-	FALSE	(T)n	SINE,Alu
chr4	17629434	A	G	0.00661		.	FALSE	AluSx3	SINE,Alu
chr3	45721934	A	G	0.00011	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	179326847	A	G	0.00512	SOAT1	+	TRUE	AluJo	SINE,Alu
chr1	15818090	T	C	0.00089	CASP9	-	TRUE	AluJb	SINE,Alu
chr3	15113657	T	C	2.06253E-05	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	45976723	T	C	0.00733	MMACHC,PRDX1	+,-	FALSE
chr2	132275343	G	T	0.00334	LOC150776	+	FALSE
chr1	10520378	T	C	0.00743		.	FALSE	AluSx1	SINE,Alu
chr1	114443609	A	G	0.00035	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr15	74319092	A	G	0.00029	PML	+	TRUE	AluSz6	SINE,Alu
chr2	20401856	T	G	0.00265	SDC1	-	FALSE
chr1	144955288	A	G	0.00574	NBPF20,PDE4DIP	+,-	FALSE
chr2	232319593	A	C	0.00348	NCL	-	FALSE	A-rich	SINE,Alu
chr1	91486839	T	C	0.00329	ZNF644	-	FALSE
chr19	42376711	A	G	0.00223		.	FALSE	AluSp	SINE,Alu
chr12	109887765	T	G	0.00091	KCTD10	-	FALSE
chr14	36784095	C	T	0.00866	MBIP	-	FALSE
chr6	109785887	T	C	7.14632E-06	MICAL1,ZBTB24	-	TRUE	AluJr	SINE,Alu
chr1	32373831	T	G	0.00252	PTP4A2	-	FALSE	(T)n	SINE,Alu
chr1	160967848	T	C	0.00200	F11R	-	TRUE	AluSp	SINE,Alu
chr8	144940368	C	T	0.00020	EPPK1	-	FALSE
chr1	26161107	A	T	0.00022	AUNIP	-	FALSE	AluSc8	SINE,Alu
chr2	32534897	A	G	0.00111		.	FALSE	AluSx1	SINE,Alu
chr1	109818158	C	T	0.00212	CELSR2	+	FALSE
chr2	20192696	G	A	0.00400	MATN3,LOC101928222	+,-	FALSE
chr2	68402360	A	G	0.00309	PNO1	+	FALSE
chr1	20977599	C	G	0.00489	PINK1,PINK1-AS	+,-	FALSE
chr19	7084638	A	G	0.00508	ZNF557	+	TRUE	AluJb	SINE,Alu
chr1	36536016	G	A	8.76996E-09		.	FALSE
chr1	19954014	G	T	0.00055	MINOS1,MINOS1-NBL1	+	FALSE	L2c	SINE,Alu
chr1	171486912	G	A	0.00866	PRRC2C	+	FALSE
chr6	160526910	A	T	0.00672	IGF2R	+	FALSE
chr3	193385047	C	T	0.00259	OPA1	+	FALSE
chr3	14986150	T	C	7.09959E-07	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr16	80636806	T	G	0.00926	CDYL2	-	FALSE
chrX	77083897	T	C	0.00184	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	158067061	G	T	0.00093	KIRREL	+	FALSE
chr8	144357992	A	G	0.00780	GLI4	+	FALSE
chr13	111301048	T	C	0.00037	CARS2	-	FALSE
chr4	57326329	A	G	0.00077	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	180167090	C	T	0.00607	QSOX1	+	FALSE
chr1	15992470	G	A	0.00605		.	FALSE
chr7	64441632	A	T	0.00038	ZNF117	-	FALSE
chr2	143638991	A	C	0.00054	KYNU	+	FALSE
chr1	25894462	A	G	0.00101	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	1595048	T	C	0.00251	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	33148284	A	G	0.00793	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	19543309	T	C	0.00769	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	179044181	A	G	0.00790	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	44463185	T	G	0.00969	SLC6A9	-	FALSE
chr1	54493197	T	C	0.00064	TMEM59	-	TRUE	AluSz6	SINE,Alu
chr1	54692334	T	C	5.22151E-05	SSBP3	-	FALSE	(T)n	SINE,Alu
chr1	145116142	A	T	0.00570	NBPF20,SEC22B	+	FALSE
chr2	55516936	A	T	0.00011	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	24862649	A	G	0.00074	RCAN3	+	FALSE
chr2	132278713	T	C	0.00317	LOC150776	+	FALSE
chr1	53366576	A	G	0.00484	ECHDC2	-	FALSE	AluJb	SINE,Alu
chr19	56090351	C	T	1.52943E-09	ZNF579	-	FALSE
chr1	145688944	A	G	0.00359	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr4	6644457	G	A	0.00059	MRFAP1	+	FALSE
chr1	16932144	A	C	1.90883E-05	NBPF1	-	FALSE
chr1	75230606	C	T	0.00077	TYW3	+	FALSE
chr1	9161366	T	C	0.00189		.	FALSE	AluSx	SINE,Alu
chr1	101444065	T	C	0.00927	SLC30A7	+	FALSE	MIR3	SINE,Alu
chr2	86252038	T	C	0.00931	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr3	179117270	T	C	0.00478	GNB4	-	TRUE	AluSz	SINE,Alu
chr1	22186113	T	G	0.00083	HSPG2	-	FALSE
chr1	16890331	C	G	0.00226	NBPF1	-	FALSE
chr1	145512014	A	G	0.00370	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr2	27315252	G	A	0.00377	KHK	+	FALSE
chr9	132266624	A	G	5.52448E-06	LINC00963	+	TRUE	AluSx	SINE,Alu
chr11	63394018	C	A	0.00103	ATL3	-	FALSE
chr2	65496187	G	A	0.00103	ACTR2	+	FALSE
chr1	38174665	G	A	0.00339	CDCA8	+	FALSE
chr3	33138549	G	A	2.02580E-06	GLB1	-	FALSE
chr15	90820068	A	G	0.00194		.	FALSE	AluY	SINE,Alu
chr22	18571457	A	G	0.00493	PEX26	+	TRUE	AluSz	SINE,Alu
chr6	31132911	C	T	0.00000		.	FALSE
chr1	25894468	C	G	0.00265	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr17	57279281	A	G	0.00055	PRR11	+	TRUE	AluSq2	SINE,Alu
chr8	128752643	G	A	4.26326E-14	MYC	+	FALSE	GA-rich	SINE,Alu
chr1	228880466	G	A	0.00216	RHOU	+	FALSE
chr5	6633042	C	T	0.00348	NSUN2	-	FALSE
chr4	10443060	T	G	0.00167	ZNF518B	-	FALSE
chr1	33148635	A	G	5.17667E-05	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr3	98518158	A	T	0.00960	DCBLD2	-	FALSE
chr1	85715978	C	G	0.00815	C1orf52	-	FALSE
chr5	52389815	A	G	0.00486	ITGA2	+	TRUE
chr3	42591956	G	A	0.00503	SEC22C	-	FALSE
chr2	176791182	T	C	0.00015	LNPK	-	TRUE	MSTD	SINE,Alu
chr6	13788387	T	C	0.00240	MCUR1	-	TRUE	AluSx	SINE,Alu
chr12	120898697	A	G	0.00488	GATC	+	TRUE	AluY	SINE,Alu
chr3	10290507	G	C	0.00367	TATDN2	+	FALSE
chr1	20977856	T	C	0.00232	PINK1,PINK1-AS	+,-	FALSE
chrX	16781156	A	G	0.00061		.	FALSE	AluJo	SINE,Alu
chr1	1255402	C	G	0.00333	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr1	226923264	G	A	0.00046	ITPKB	-	FALSE
chr3	100043289	C	T	0.00049	TBC1D23	+	FALSE
chr1	47844403	C	A	0.00511	CMPK1	+	FALSE
chr1	1650787	T	C	0.00071	CDK11B,CDK11A	-	FALSE
chr5	38478065	T	A	0.00049	LIFR	-	FALSE
chr1	24172310	C	T	0.00502	FUCA1	-	FALSE
chr1	109474776	A	G	0.00149	GPSM2,CLCC1	+,-	FALSE	AluSz	SINE,Alu
chr8	38829839	A	G	0.00184	PLEKHA2	+	TRUE	AluJr4	SINE,Alu
chr1	27426756	A	G	0.00384	SLC9A1	-	FALSE
chr1	19543457	T	C	0.00569	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	6651457	G	A	0.00614	KLHL21	-	FALSE
chr2	217366821	A	G	0.00510		.	FALSE	AluSz6	SINE,Alu
chr1	1595586	T	C	0.00206	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr7	5410425	G	C	0.00043	TNRC18	-	FALSE	(CACCGC)n	SINE,Alu
chr1	67874696	T	C	0.00420	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr2	10270775	G	T	0.00953	RRM2	+	FALSE	AluSx	SINE,Alu
chr1	10517512	T	C	0.00498		.	FALSE	AluSx1	SINE,Alu
chr4	187647832	C	G	0.00592		.	FALSE
chr1	10521126	T	C	0.00560	DFFA	-	TRUE	AluY	SINE,Alu
chr1	20977913	T	G	0.00201	PINK1,PINK1-AS	+,-	FALSE
chr1	145293012	G	A	0.00250	NBPF20	+	FALSE
chr1	146250905	G	C	0.00444	NBPF20,NBPF10,NBPF25P	+	FALSE
chr5	159492107	A	T	0.00332	TTC1	+	FALSE
chr1	53289688	A	G	0.00069	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr4	56237899	A	G	0.00503	SRD5A3,SRD5A3-AS1	+,-	FALSE	AluSx	SINE,Alu
chr15	32820880	C	G	0.00672	WHAMMP1	-	FALSE
chr17	57279234	A	G	0.00293	PRR11	+	TRUE	AluSq2	SINE,Alu
chr2	101622887	G	A	0.00711	RPL31	+	FALSE
chr19	11257673	T	C	0.00155	SPC24	-	TRUE	AluSp	SINE,Alu
chr1	40213234	A	G	0.00146	PPIE	+	TRUE	AluSx3	SINE,Alu
chr1	155429590	G	T	0.00356	ASH1L	-	FALSE
chr5	139876355	G	A	0.00815	ANKHD1,ANKHD1-EIF4EBP3	+	FALSE	GA-rich	SINE,Alu
chr1	16932809	C	T	0.00887	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr4	17802772	G	T	0.00328	DCAF16	-	FALSE	AluSz	SINE,Alu
chr6	114182251	C	T	0.00021	MARCKS	+	FALSE
chr15	55609650	T	C	0.00309	PIGBOS1	-	TRUE	AluSg	SINE,Alu
chr2	176043084	A	G	0.00801	ATP5G3	-	FALSE
chr1	204521280	A	G	0.00519	MDM4	+	TRUE	AluSp	SINE,Alu
chr1	10438006	A	T	6.81521E-05	KIF1B	+	FALSE	AluSg	SINE,Alu
chr2	203741640	T	C	0.00419		.	FALSE	AluJr	SINE,Alu
chr1	145511796	T	G	0.00428	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	(T)n	SINE,Alu
chr8	37717121	C	A	0.00087	RAB11FIP1	-	FALSE
chr2	240954110	A	G	0.00605	NDUFA10	-	FALSE
chr1	87328403	A	T	0.00235	SEP15	-	FALSE
chr1	39924765	C	A	0.00303	MACF1	+	FALSE
chr1	201355943	C	T	0.00355	LAD1	-	FALSE
chr1	40537942	A	C	0.00955	CAP1	+	FALSE	(A)n	SINE,Alu
chr3	186505900	T	G	1.87786E-07	EIF4A2	+	FALSE
chr7	143003525	T	A	0.00064	CASP2	+	FALSE	AluY	SINE,Alu
chr8	22995145	T	C	3.53807E-06	TNFRSF10D	-	FALSE
chr17	17425631	C	T	0.00036	PEMT	-	FALSE
chr5	139931627	C	T	0.00073	SRA1	-	FALSE
chr9	96438974	C	G	0.00083	PHF2	+	FALSE	(CTCCAC)n	SINE,Alu
chr1	10240859	G	T	0.00312	UBE4B	+	FALSE
chr1	120611964	G	C	0.00077	NOTCH2	-	FALSE
chr7	924602	A	G	0.00195	GET4	+	TRUE	AluJb	SINE,Alu
chr1	209605643	A	C	0.00590	MIR205HG	+	FALSE	(AGC)n	SINE,Alu
chr3	121351277	A	T	0.00388	HCLS1	-	FALSE
chr1	1662764	T	C	0.00505	SLC35E2	-	TRUE	AluY	SINE,Alu
chr1	148251083	T	C	0.00041	NBPF8,NBPF14,NBPF9	-	FALSE	L1MC4	SINE,Alu
chr1	1419700	A	G	0.00464	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	79125148	G	A	0.00203	IFI44	+	FALSE
chr3	42592902	T	C	0.00934	SEC22C	-	FALSE	AluJr	SINE,Alu
chr15	44055281	T	C	0.00580	PDIA3	+	FALSE
chr1	46075663	A	G	0.00061	NASP	+	TRUE	AluSx4	SINE,Alu
chr11	67765170	G	T	0.00185	UNC93B1	-	FALSE
chr1	94351064	A	T	0.00212	GCLM	-	FALSE
chr3	33909024	A	T	0.00134	PDCD6IP	+	FALSE
chr2	155555207	A	C	0.00073	KCNJ3	+	FALSE
chr1	200522058	T	A	0.00209	KIF14	-	FALSE	AluSg	SINE,Alu
chr2	37331753	T	C	0.00026		.	FALSE	AluJb	SINE,Alu
chr1	36067817	T	C	7.91657E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	155853219	A	G	0.00520	SYT11	+	TRUE	AluJb	SINE,Alu
chr1	35816903	C	T	0.00174	ZMYM4	+	FALSE
chr3	57548976	A	G	0.00132	PDE12	+	TRUE	FRAM	SINE,Alu
chr2	217366793	A	G	0.00514		.	FALSE	AluSz6	SINE,Alu
chr1	35646125	C	T	0.00027	SFPQ	-	FALSE
chr1	145689537	A	G	0.00341	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr14	75202857	A	G	2.23354E-05	FCF1	+	TRUE	AluSx	SINE,Alu
chr1	160966351	T	C	0.00023	F11R	-	TRUE	AluSg	SINE,Alu
chr1	40537923	G	A	6.08919E-05	CAP1	+	FALSE	(A)n	SINE,Alu
chr15	52202957	G	T	0.00094	TMOD3	+	FALSE	(T)n	SINE,Alu
chr1	11721616	G	A	0.00243	FBXO44	+	FALSE
chr14	75202553	A	G	0.00014	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	145689492	A	G	0.00075	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	67874854	T	C	0.00358	SERBP1	-	TRUE	AluSx	SINE,Alu

RBP	DDX55
Knock-Method	shRNA
RBP Family	DEAD
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR964YTW
Platform	HiSeq
Pubmed ID	32252787

DDX55 - Target Gene Network