RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	129024313	A	G	0.00612	HS6ST1	-	FALSE
chr3	33186087	A	G	1.22529E-05	CRTAP	+	FALSE	LTR16A1	SINE,Alu
chr1	44463185	T	G	0.00397	SLC6A9	-	FALSE
chr1	89299658	G	A	0.00779	PKN2	+	FALSE
chr1	43394666	G	A	0.00224	SLC2A1	-	FALSE
chr7	75958129	T	A	0.00162	YWHAG	-	FALSE
chr2	183643905	A	T	0.00113	DNAJC10	+	FALSE
chr7	102277600	T	C	0.00240	POLR2J2,UPK3BL	-	TRUE	AluSc	SINE,Alu
chr5	53841238	G	T	0.00267	SNX18	+	FALSE
chr14	19684445	A	G	0.00351	DUXAP10	+	FALSE
chr2	206987738	T	C	0.00322		.	FALSE	AluJb	SINE,Alu
chr1	175161849	G	T	0.00030	KIAA0040	-	FALSE
chr20	25428750	A	G	3.17139E-06	GINS1	+	TRUE	AluJb	SINE,Alu
chr1	27250642	A	G	0.00020	NUDC	+	FALSE
chr2	23865260	T	C	0.00262	KLHL29	+	FALSE
chr3	14986111	T	C	0.00000	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	11141187	C	G	0.00814	EXOSC10	-	FALSE
chr2	176791183	T	C	0.00252	LNPK	-	TRUE	MSTD	SINE,Alu
chr1	45975574	A	G	0.00050	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr14	77581481	C	A	0.00997	CIPC	+	FALSE
chr1	145689271	A	G	0.00250	NBPF20,NBPF10	+	FALSE
chr2	206987635	T	C	0.00930		.	FALSE	AluJb	SINE,Alu
chr1	6279957	A	G	0.00814	RNF207	+	TRUE	AluSp	SINE,Alu
chr1	118071289	A	G	0.00023		.	FALSE
chr5	149823794	G	T	0.00204	RPS14	-	FALSE
chr2	37331555	T	C	0.00992		.	FALSE	AluJb	SINE,Alu
chr1	27108139	A	T	0.00683	ARID1A	+	FALSE
chr1	179326278	A	G	0.00379	SOAT1	+	TRUE
chr17	4849959	G	T	0.00636	PFN1	-	FALSE
chr19	18306990	G	C	0.00090	MPV17L2	+	FALSE
chr12	69237057	A	G	0.00259	MDM2	+	TRUE
chr1	114940216	T	G	0.00074	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	10520154	T	C	0.00380		.	FALSE	AluSx	SINE,Alu
chr1	31732603	A	C	0.00148	SNRNP40	-	FALSE
chr12	1611798	C	T	0.00338	LINC00942	+	FALSE
chr1	327538	A	G	0.00010		.	FALSE
chr1	6283332	T	C	6.58989E-06	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	36068275	T	C	0.00625	PSMB2	-	TRUE	AluSc	SINE,Alu
chr7	131241052	A	G	0.00663	PODXL	-	FALSE	(GGCGAC)n	SINE,Alu
chr6	42855957	A	G	0.00107	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	10518720	T	C	0.00530		.	FALSE	AluSx1	SINE,Alu
chr5	79923424	T	C	0.00054	DHFR	-	TRUE	AluJr	SINE,Alu
chr5	14397238	T	C	0.00552	TRIO	+	FALSE
chr1	1447756	G	C	0.00343	ATAD3A	+	FALSE
chr2	11323078	C	T	0.00539	ROCK2	-	FALSE
chr1	153907297	C	T	3.91411E-05	DENND4B	-	FALSE	(CTG)n	SINE,Alu
chr1	91990445	A	G	0.00784	CDC7	+	FALSE	LFSINE_Vert	SINE,Alu
chr2	217366919	A	G	0.00615		.	FALSE	AluSz6	SINE,Alu
chr1	144930940	T	C	0.00181	NBPF20,PDE4DIP	+,-	FALSE
chr4	17803026	T	C	0.00396	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	54692341	T	C	0.00045	SSBP3	-	FALSE	(T)n	SINE,Alu
chr4	5743512	T	C	0.00210	EVC	+	FALSE
chr5	114541533	T	C	0.00957		.	FALSE	L1ME3A	SINE,Alu
chr1	120839681	C	A	0.00077	FAM72B	+	FALSE
chr17	73940167	T	C	0.00035	ACOX1	-	TRUE	AluJb	SINE,Alu
chr3	12940346	G	A	0.00411	IQSEC1	-	FALSE
chr1	155161737	G	C	0.00482	MUC1	-	FALSE
chr17	79514129	G	A	0.00164	FAAP100	-	FALSE
chr1	201846675	C	T	0.00145	IPO9	+	FALSE
chr3	122293773	A	T	0.00852	DTX3L	+	FALSE
chr2	99812465	A	G	2.16984E-05	MRPL30	+	TRUE	AluSx	SINE,Alu
chr2	46612340	G	T	3.13955E-05	EPAS1	+	FALSE
chr1	1534826	C	T	0.00382	FNDC10	-	FALSE
chr4	155457052	T	A	0.00833	PLRG1	-	FALSE	L2d2	SINE,Alu
chr4	843695	A	G	0.00602	GAK	-	FALSE
chr2	37327662	T	C	0.00220		.	FALSE
chr2	70452146	T	G	0.00192	TIA1	-	FALSE
chr3	39449137	T	C	0.00000	RPSA	+	FALSE
chr2	196999052	C	G	0.00358	STK17B	-	FALSE	MER1B	SINE,Alu
chr2	219100202	C	T	0.00027	ARPC2	+	FALSE	AluJr	SINE,Alu
chr1	10518688	T	C	0.00154		.	FALSE	AluSx1	SINE,Alu
chr5	180663941	G	T	0.00166	RACK1	-	FALSE
chr2	32582399	T	G	0.00147	BIRC6	+	FALSE	(GGC)n	SINE,Alu
chr3	39438321	A	T	6.25124E-06	SLC25A38	+	FALSE
chr1	145369476	A	G	0.00332	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr3	10192633	A	G	8.20807E-06	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	145509570	A	G	0.00037	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr1	36068295	T	C	0.00076	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	37327666	T	C	3.66834E-09		.	FALSE
chr1	205129319	G	A	0.00177	DSTYK	-	FALSE
chr5	35878249	G	A	0.00421	IL7R	+	FALSE
chr2	120022385	C	T	0.00184	STEAP3	+	FALSE
chr1	71531596	A	G	1.07667E-05	ZRANB2-AS1,ZRANB2	+,-	FALSE
chr6	34231301	G	C	0.00772		.	FALSE
chr1	19543459	T	C	0.00395	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	160966352	T	C	3.14235E-07	F11R	-	TRUE	AluSg	SINE,Alu
chr1	15904318	C	T	0.00109	AGMAT	-	FALSE
chr1	145303971	A	G	0.00060	NBPF20,NBPF10	+	FALSE
chr6	24720271	T	G	0.00839		.	FALSE
chr14	88933002	C	G	0.00459	PTPN21	-	FALSE
chr1	6695423	T	G	9.25675E-05	THAP3,DNAJC11	+,-	FALSE
chr1	53289892	A	G	0.00079	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr5	151041886	T	G	0.00269	SPARC	-	FALSE
chr2	38522643	G	T	0.00285	ATL2	-	FALSE
chr1	165877666	T	C	0.00327	UCK2	+	FALSE	(T)n	SINE,Alu
chr3	152883475	A	T	0.00384	RAP2B	+	FALSE
chr16	70695982	T	C	0.00926	MTSS1L	-	FALSE
chr17	48155425	G	A	0.00603	ITGA3	+	FALSE
chr17	17971644	G	T	0.00154	GID4	+	FALSE
chr2	38522138	G	T	8.89010E-06	ATL2	-	FALSE
chr7	30634661	C	G	3.93145E-07	GARS	+	FALSE
chr1	183155546	G	A	0.00103	LAMC2	+	FALSE
chr12	69237013	A	G	0.00659	MDM2	+	TRUE
chr1	28835937	A	G	2.00244E-07	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	91990450	A	T	0.00091	CDC7	+	FALSE	LFSINE_Vert	SINE,Alu
chr4	189020293	G	A	0.00361	TRIML2	-	FALSE
chr3	196670087	G	A	4.07177E-06	NCBP2-AS2	+	FALSE
chr6	13789470	T	C	0.00166	MCUR1	-	TRUE	AluSg	SINE,Alu
chr1	237065583	G	T	0.00959	MTR	+	FALSE
chr1	10221302	G	A	0.00119	UBE4B	+	FALSE
chr1	40219065	C	T	0.00232	PPIE	+	FALSE
chr1	118420452	C	G	0.00713	GDAP2	-	FALSE
chr6	13788222	T	C	0.00490	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	79356400	C	T	0.00714	ADGRL4	-	FALSE
chr1	20977380	T	C	0.00695	PINK1,PINK1-AS	+,-	FALSE
chr4	52888499	G	A	8.91315E-05	SGCB	-	FALSE
chr2	99812447	A	G	0.00525	MRPL30	+	TRUE	AluSx	SINE,Alu
chr1	6283260	T	C	0.00402	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	55207988	G	A	0.00914	MROH7-TTC4,TTC4	+	FALSE
chr1	26143725	A	T	0.00818	SEPN1	+	FALSE	AluSx	SINE,Alu
chr3	42594019	C	T	3.51223E-05	SEC22C	-	FALSE
chr1	19282314	G	T	0.00158	IFFO2	-	FALSE
chr1	113248365	A	G	0.00252	RHOC	-	FALSE
chr19	13884096	A	G	1.54361E-06	MRI1	+	TRUE	AluSz	SINE,Alu
chr19	7084638	A	G	0.00508	ZNF557	+	TRUE	AluJb	SINE,Alu
chr1	33149508	A	G	0.00871	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr12	56510708	A	G	0.00050	RPL41	+	FALSE
chr1	118502685	T	A	0.00333	WDR3,SPAG17	+,-	FALSE
chr3	122283289	C	A	0.00072	DTX3L,PARP9	+,-	FALSE
chr3	44791512	T	C	1.32337E-05	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr12	49745425	A	G	0.00489	DNAJC22	+	TRUE	AluSx3	SINE,Alu
chr2	101587455	C	T	0.00178	NPAS2	+	FALSE
chr1	234561498	T	C	2.33971E-05	TARBP1	-	FALSE
chr19	18477761	A	G	0.00461	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr7	6442892	C	A	0.00675	RAC1	+	FALSE
chr1	46075664	A	G	0.00842	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	19543457	T	C	0.00059	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr16	10623706	T	C	0.00064	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	1595586	T	C	0.00051	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr2	37331578	T	C	0.00675		.	FALSE	AluJb	SINE,Alu
chr8	22995145	T	C	3.53807E-06	TNFRSF10D	-	FALSE
chr3	39137788	A	C	0.00830	WDR48	+	FALSE
chr1	10519912	T	C	0.00737		.	FALSE	AluJr	SINE,Alu
chr1	8413839	A	G	0.00776	RERE	-	FALSE
chr1	95392593	C	T	0.00173	CNN3	-	FALSE	(GGCGCG)n	SINE,Alu
chr1	19586458	A	G	2.46370E-10	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	10042987	A	G	0.00488	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr6	114182986	T	A	0.00316	MARCKS	+	FALSE
chr3	64081236	T	C	8.95068E-05	PRICKLE2,PRICKLE2-AS1	+,-	FALSE
chr2	98264656	T	A	0.00993	COX5B	+	FALSE
chr7	128829066	A	G	0.00816	SMO	+	FALSE
chr1	9160996	T	C	0.00023		.	FALSE	AluJb	SINE,Alu
chr10	101992810	T	C	0.00149	CWF19L1	-	TRUE	AluJb	SINE,Alu
chr2	37331134	T	C	0.00042		.	FALSE	AluSx1	SINE,Alu
chr5	81571271	T	G	0.00827	RPS23	-	FALSE
chr3	195243012	A	C	0.00128	PPP1R2	-	FALSE
chr1	15993713	A	T	7.45571E-05		.	FALSE	AluSx4	SINE,Alu
chr1	10518845	T	C	0.00882		.	FALSE	AluSx1	SINE,Alu
chr1	28785729	G	A	0.00181	PHACTR4	+	FALSE
chr15	45775144	T	C	0.00867	SLC30A4	-	TRUE	AluJr	SINE,Alu
chr2	24227357	A	G	0.00295		.	FALSE	AluSc	SINE,Alu
chr4	190883001	C	G	0.00319	FRG1	+	FALSE
chr3	195460892	A	G	0.00057		.	FALSE	AluSg	SINE,Alu
chr1	32372360	C	T	0.00697	PTP4A2	-	FALSE	(CA)n	SINE,Alu
chr1	143399383	T	A	0.00198		.	FALSE	L1MC4	SINE,Alu
chr1	85732582	G	A	0.00371	BCL10	-	FALSE	AluSz6	SINE,Alu
chr6	74134744	T	C	0.00214		.	FALSE	AluSz	SINE,Alu
chr2	37230734	C	T	0.00192	HEATR5B	-	FALSE
chr1	89271574	T	C	3.83690E-05	PKN2	+	FALSE
chr7	156762446	G	T	0.00162	NOM1	+	FALSE
chr13	31033317	C	T	0.00254	HMGB1	-	FALSE
chr1	41487492	C	G	0.00221	SLFNL1-AS1	+	FALSE
chr2	9770610	A	G	0.00486	YWHAQ	-	FALSE
chr2	74381319	C	A	0.00912	MOB1A	-	FALSE	AluY	SINE,Alu
chr2	38961523	C	A	0.00790	GALM	+	FALSE	AluSc8	SINE,Alu
chr1	1594196	T	C	0.00097	CDK11B,SLC35E2B	-	FALSE
chr6	26095454	A	G	0.00284	HFE	+	TRUE	AluY	SINE,Alu
chr17	45761109	T	G	0.00018		.	FALSE
chr1	23636277	A	T	0.00632	HNRNPR	-	FALSE
chr1	27992799	T	A	0.00014	IFI6	-	FALSE	FAM	SINE,Alu
chr1	101442211	T	C	0.00590	SLC30A7	+	FALSE
chr2	114356336	C	T	0.00680	WASH2P	+	FALSE
chr1	52520892	A	C	0.00292	TXNDC12	-	FALSE
chr1	53289892	A	G	0.00505	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr3	10192838	A	G	1.36876E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	119574537	G	A	0.00255	WARS2	-	FALSE
chr1	89522646	G	C	0.00027	GBP1	-	FALSE
chr15	65442678	T	C	2.30704E-07	CLPX	-	TRUE	AluSg4	SINE,Alu
chr1	36068369	T	C	0.00207	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	191555980	T	A	0.00913	NAB1	+	FALSE
chr15	41590287	A	G	0.00319	OIP5-AS1	+	FALSE
chr6	150047420	T	C	2.23465E-06	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	9161218	T	C	0.00581		.	FALSE	AluSx	SINE,Alu
chr1	145281633	C	A	0.00022	NBPF20,NOTCH2NL	+	FALSE
chr1	65692499	C	T	0.00235	AK4	+	FALSE	(T)n	SINE,Alu
chr1	9161011	T	C	0.00190		.	FALSE	AluJb	SINE,Alu
chr7	102016322	A	G	0.00223	LOC100289561,LOC100630923	+	FALSE
chr1	24798498	C	T	0.00131	NIPAL3	+	FALSE
chr1	143915747	G	A	0.00603		.	FALSE
chr3	10193358	A	G	0.00765	VHL	+	TRUE	L1ME4a	SINE,Alu
chr15	42503336	C	T	0.00916	TMEM87A	-	FALSE	(T)n	SINE,Alu
chr5	125961447	A	G	0.00563	PHAX	+	TRUE	AluSz6	SINE,Alu
chr9	131872862	C	G	0.00131	CRAT	-	FALSE
chr2	37329238	T	C	0.00249		.	FALSE	AluJr4	SINE,Alu
chr12	98942840	A	G	0.00031	TMPO	+	FALSE	AluSc	SINE,Alu
chr11	18552273	C	T	0.00243		.	FALSE
chr2	97534237	C	T	0.00644	SEMA4C	-	FALSE
chr17	38974612	T	C	0.00963	KRT10	-	FALSE
chr1	168212509	A	G	0.00765		.	FALSE
chr7	38765149	C	T	0.00785	VPS41	-	FALSE
chr17	48771486	G	A	0.00081	ANKRD40	-	FALSE	AluSz	SINE,Alu
chr1	31905887	A	C	4.57629E-05	SERINC2	+	FALSE
chr5	203683	G	T	0.00399		.	FALSE	MIRb	SINE,Alu
chr3	100467676	A	T	0.00067	TFG	+	FALSE
chr1	6160958	A	G	0.00967	KCNAB2	+	FALSE
chr1	93297605	C	G	0.00319	RPL5	+	FALSE
chr3	183209035	T	C	9.98912E-07	KLHL6	-	TRUE	AluSq	SINE,Alu
chr1	900721	T	C	0.00032	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr12	48539888	C	A	0.00088	PFKM	+	FALSE
chr1	109475572	A	G	0.00096	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chrX	77083941	T	C	0.00271	MAGT1	-	TRUE	AluSz	SINE,Alu
chr2	178406769	A	T	0.00416	AGPS	+	FALSE
chr1	16932144	A	C	7.50683E-06	NBPF1	-	FALSE
chr6	149912555	G	A	0.00551		.	FALSE
chr2	37327651	T	C	0.00395		.	FALSE
chr2	91805816	G	A	2.75786E-10		.	FALSE
chr6	107113953	C	G	0.00300	QRSL1	+	FALSE	AluSg	SINE,Alu
chr1	182356399	A	G	0.00740	GLUL	-	FALSE
chr1	19542310	T	C	0.00112	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr14	50792837	A	G	0.00550	ATP5S	+	TRUE	AluSx	SINE,Alu
chr6	143382534	C	T	0.00252	AIG1	+	FALSE
chr1	111682307	G	C	5.71833E-05	DRAM2,CEPT1	+,-	FALSE
chr1	120612006	G	A	0.00930	NOTCH2	-	FALSE
chr4	39550715	T	C	0.00995	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr2	3504687	A	G	0.00755	ADI1	-	FALSE
chr11	76733945	A	T	0.00931	ACER3	+	FALSE	A-rich	SINE,Alu
chr17	1683647	T	C	0.00763	SMYD4	-	TRUE	AluJb	SINE,Alu
chr16	81745173	C	A	0.00179	CMIP	+	FALSE
chr5	125962086	A	G	0.00231	PHAX	+	TRUE	AluSz	SINE,Alu
chr17	15434181	T	C	0.00011	TVP23C-CDRT4,TVP23C	-	TRUE	AluJb	SINE,Alu
chr5	167898510	C	G	0.00013	WWC1	+	FALSE
chr16	1819020	A	T	0.00258	MAPK8IP3	+	FALSE
chr1	15755550	A	C	0.00969	EFHD2	+	FALSE
chr19	42753649	G	C	0.00723	ERF	-	FALSE
chr2	113513825	T	C	2.13681E-05	CKAP2L	-	FALSE
chr3	10192709	C	T	0.00082	VHL	+	FALSE	AluSx1	SINE,Alu
chr2	27315252	G	A	0.00377	KHK	+	FALSE
chr3	44791553	T	C	0.00298	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr5	130537006	C	A	0.00020	LYRM7	+	FALSE	AluSx4	SINE,Alu
chr1	28564252	A	G	0.00986	ATPIF1	+	FALSE
chr1	197475873	G	A	0.00844	DENND1B	-	FALSE
chr1	160967754	T	C	0.00563	F11R	-	TRUE	(T)n	SINE,Alu
chr1	36299630	A	G	0.00828	AGO4	+	FALSE
chr1	33068435	A	G	0.00081	ZBTB8A	+	TRUE	AluY	SINE,Alu
chr1	38174185	G	T	0.00020	CDCA8	+	FALSE
chr1	205686523	G	T	2.43057E-05	NUCKS1	-	FALSE
chr8	25272425	C	T	0.00605	DOCK5	+	FALSE
chr1	145369589	T	C	0.00046	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	44088117	G	T	0.00584	PTPRF	+	FALSE	(T)n	SINE,Alu
chr6	42854681	A	G	0.00011	RPL7L1	+	TRUE	AluSc	SINE,Alu
chr1	118066459	A	G	1.18146E-05	MAN1A2	+	FALSE
chr8	143352528	A	C	0.00312	TSNARE1	-	FALSE

RBP	NUFIP2
Knock-Method	shRNA
RBP Family	NUFIP2
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR754RJA
Platform	HiSeq
Pubmed ID	32252787

NUFIP2 - Target Gene Network