RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr8	48889672	A	G	0.00091	MCM4	+	TRUE	AluSx3	SINE,Alu
chr1	35251229	G	A	0.00516	GJB3	+	FALSE
chr1	1251841	T	C	0.00915	CPSF3L	-	TRUE	AluSq2	SINE,Alu
chr1	16933631	G	A	0.00442	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr8	99053985	T	G	4.76792E-05	RPL30	-	FALSE
chr7	137561084	G	A	0.00194	CREB3L2	-	FALSE	(GT)n	SINE,Alu
chr2	65432447	C	T	0.00486		.	FALSE
chr3	56763328	T	C	0.00546	ARHGEF3	-	FALSE
chr3	12940377	G	T	0.00878	IQSEC1	-	FALSE
chr10	61548859	A	C	0.00011	CCDC6	-	FALSE
chr1	93827995	C	T	0.00236	DR1	+	FALSE
chr7	99017241	C	A	0.00721	PTCD1,ATP5J2-PTCD1	-	FALSE
chr2	187544223	T	G	0.00254	ITGAV	+	FALSE
chr2	202031506	A	G	0.00508	CFLAR	+	TRUE	SVA_A	SINE,Alu
chr1	1597423	C	T	1.10134E-13	CDK11B,SLC35E2B	-	FALSE
chr15	51294995	G	A	0.00268	AP4E1	+	FALSE
chr17	45219755	G	T	0.00592	CDC27	-	FALSE
chr1	145293469	G	C	0.00888	NBPF20,NBPF10	+	FALSE
chr3	158320703	C	A	0.00841	MLF1	+	FALSE
chr22	18572729	A	G	0.00228	PEX26	+	TRUE	AluYf1	SINE,Alu
chr2	29135468	C	G	0.00217	WDR43	+	FALSE
chr1	43167907	T	C	0.00072	YBX1	+	FALSE
chr1	101443431	C	T	0.00013	SLC30A7	+	FALSE	AluSq2	SINE,Alu
chr1	19542621	T	C	1.78455E-05	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr3	14175262	T	C	3.06250E-10	TMEM43	+	FALSE
chr3	48787219	A	G	0.00024	PRKAR2A	-	FALSE
chr1	10517314	T	C	0.00073		.	FALSE	AluJr	SINE,Alu
chr19	19793168	A	G	0.00481	ZNF101	+	TRUE	AluSz	SINE,Alu
chr2	191555980	T	A	0.00913	NAB1	+	FALSE
chr1	156495520	T	A	0.00048	IQGAP3	-	FALSE
chr2	37330503	T	C	0.00177		.	FALSE	AluSq2	SINE,Alu
chr1	110136329	G	T	0.00993	GNAI3	+	FALSE
chr19	42375586	A	G	0.00404		.	FALSE	AluSx	SINE,Alu
chr1	6282426	T	C	0.00513	ICMT	-	TRUE	AluSz	SINE,Alu
chr19	11256725	T	C	0.00096	SPC24	-	TRUE	AluJr4	SINE,Alu
chr1	46075612	A	G	0.00153	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	118066724	A	T	0.00979	MAN1A2	+	FALSE
chr1	10520145	T	C	0.00590		.	FALSE	AluSx	SINE,Alu
chr1	204524400	A	G	0.00029	MDM4	+	TRUE	AluY	SINE,Alu
chr1	1650797	A	G	3.70820E-05	CDK11B,CDK11A	-	FALSE
chr11	8707397	T	A	0.00046	RPL27A	+	FALSE
chr1	1246979	G	T	0.00168	PUSL1,CPSF3L	+,-	FALSE
chr1	28826128	A	G	0.00060	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr2	37431563	A	G	0.00993	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr1	226171340	T	C	0.00462	SDE2	-	TRUE	BC200	SINE,Alu
chr1	121133392	T	C	0.00651	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr10	117823568	T	A	0.00483	GFRA1	-	FALSE	(ATC)n	SINE,Alu
chr16	10625266	T	C	0.00587	EMP2	-	TRUE	AluSx	SINE,Alu
chr1	25890189	A	G	0.00961	LDLRAP1	+	FALSE
chr6	150045919	T	C	0.00206	NUP43	-	TRUE	AluSq	SINE,Alu
chr1	20976078	T	C	0.00064	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	17733270	T	A	0.00088	RCC2	-	FALSE
chr4	2841551	A	G	0.00258	SH3BP2	+	TRUE	AluJr	SINE,Alu
chr1	23409538	G	A	0.00292	KDM1A	+	FALSE
chr2	208619675	A	G	0.00012	CCNYL1	+	TRUE	AluJb	SINE,Alu
chr3	156258230	T	C	0.00176	SSR3	-	TRUE	AluYk3	SINE,Alu
chr3	10290508	C	T	0.00682	TATDN2	+	FALSE
chr2	113289701	T	G	0.00994	TTL	+	FALSE
chr3	99886662	G	A	0.00011	CMSS1	+	FALSE
chr7	55433884	A	C	0.00271	LANCL2	+	FALSE
chr2	99813003	A	G	0.00370	MRPL30	+	TRUE	AluJb	SINE,Alu
chr12	125512173	A	G	0.00285		.	FALSE	AluSx1	SINE,Alu
chr1	6282371	T	C	0.00897	ICMT	-	TRUE	AluSz	SINE,Alu
chr2	158170017	T	C	0.00662	GALNT5	+	FALSE
chr4	169910101	C	T	0.00026	CBR4	-	FALSE
chr21	47676711	G	A	0.00316	MCM3AP	-	FALSE
chr12	133389998	T	C	0.00829	GOLGA3	-	FALSE
chr1	1419768	A	G	0.00189	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	155403823	A	G	0.00850	ASH1L,POU5F1P4	+,-	FALSE
chr1	145273345	T	C	0.00640	NBPF20,NOTCH2NL	+	FALSE
chr1	179041705	A	T	0.00068	FAM20B	+	FALSE
chr1	245017464	T	A	0.00624	HNRNPU,SNORA100	-	FALSE
chr1	6283264	T	C	0.00073	ICMT	-	TRUE	AluSx3	SINE,Alu
chr5	149363414	A	G	0.00503	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr1	38279987	T	C	0.00980	MTF1	-	FALSE
chr1	143189076	G	A	0.00048	LOC102723769	-	FALSE
chr1	92148839	T	C	0.00259	TGFBR3	-	FALSE
chr1	46076529	A	G	0.00336	NASP	+	TRUE	AluSx	SINE,Alu
chr1	569492	T	C	0.00336		.	FALSE
chr1	28836973	A	G	0.00289	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr3	126755134	C	T	0.00920	PLXNA1	+	FALSE
chr7	143003525	T	A	0.00064	CASP2	+	FALSE	AluY	SINE,Alu
chr1	179042905	A	G	0.00034	FAM20B	+	TRUE
chr1	210416438	C	A	0.00085	SERTAD4	+	FALSE
chr5	17276080	A	C	0.00298	BASP1	+	FALSE	(TC)n	SINE,Alu
chr1	145512078	A	G	0.00907	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	1252468	T	C	0.00096	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr16	81064543	A	G	0.00066	CENPN	+	TRUE	AluSg	SINE,Alu
chr3	14986104	T	C	0.00307	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr8	124262075	G	T	7.79989E-05	ZHX1-C8orf76,ZHX1	-	FALSE
chr1	214529740	T	C	0.00375	PTPN14	-	TRUE
chr5	40830064	T	C	0.00554		.	FALSE	AluSp	SINE,Alu
chr2	37431485	A	G	0.00339	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr9	28403	G	T	1.21037E-06	WASH1	-	FALSE	MIR	SINE,Alu
chr1	145695329	A	G	0.00400	NBPF20,NBPF10	+	FALSE	AluSz	SINE,Alu
chr2	74442550	A	T	0.00826		.	FALSE
chr4	73922981	T	C	0.00491	COX18	-	TRUE	AluSz	SINE,Alu
chr1	10519982	T	C	0.00129		.	FALSE	AluJr	SINE,Alu
chr1	9328120	A	G	0.00024	H6PD	+	TRUE	AluJr	SINE,Alu
chr3	57551513	A	G	0.00037	PDE12	+	TRUE	AluSc	SINE,Alu
chr1	31902343	T	C	1.48709E-05	SERINC2	+	FALSE
chr1	19585917	T	A	0.00308	MRTO4	+	FALSE	AluJr	SINE,Alu
chrX	119572534	C	A	0.00387	LAMP2	-	FALSE
chr1	220231946	T	C	0.00439	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	1650787	T	C	0.00071	CDK11B,CDK11A	-	FALSE
chr1	184675814	G	A	0.00048	EDEM3	-	FALSE
chr1	46076467	A	G	0.00475	NASP	+	TRUE	AluSx	SINE,Alu
chr1	145281656	A	T	0.00202	NBPF20,NOTCH2NL	+	FALSE
chr3	195243006	C	A	0.00982	PPP1R2	-	FALSE
chr6	150047376	T	C	0.00306	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	10042955	A	G	0.00131	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr3	44791355	T	C	0.00468	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr1	116235179	G	T	0.00187	VANGL1	+	FALSE
chr19	42375611	A	G	0.00426		.	FALSE	AluSx	SINE,Alu
chr1	36522460	A	G	0.00407		.	FALSE	AluSc	SINE,Alu
chr3	40578933	A	G	0.00947	ZNF621	+	TRUE	AluJr	SINE,Alu
chr1	46828653	T	A	0.00920	NSUN4	+	FALSE
chr19	58375157	A	G	0.00408	ZNF587	+	TRUE	AluSx4	SINE,Alu
chr2	37506939	A	G	0.00119	PRKD3	-	FALSE
chr4	57326186	A	G	0.00203	PAICS	+	TRUE	AluJr	SINE,Alu
chr2	24223353	A	G	0.00083	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr1	109856085	G	A	0.00684	SORT1	-	FALSE
chr1	168218574	A	G	0.00148		.	FALSE	AluSz	SINE,Alu
chr2	31557839	G	T	0.00145	XDH	-	FALSE	AluJr	SINE,Alu
chr9	136335345	G	A	0.00490	CACFD1	+	FALSE	(TG)n	SINE,Alu
chr1	3546269	C	A	0.00260	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr17	42113064	A	G	0.00014	LSM12	-	FALSE	(A)n	SINE,Alu
chr7	128143797	A	G	4.50405E-06		.	FALSE	AluSq2	SINE,Alu
chr1	16890500	G	A	0.00030	NBPF1	-	FALSE
chr12	125511961	A	G	1.08093E-06	THRIL	-	FALSE	AluSx1	SINE,Alu
chr4	68484330	G	A	0.00131	UBA6	-	FALSE
chr3	40578815	A	G	0.00041	ZNF621	+	FALSE	AluJr	SINE,Alu
chr1	121134245	C	T	0.00174	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	(TTTCCT)n	SINE,Alu
chr1	53359745	A	G	0.00661	ZYG11A	+	TRUE	AluSx4	SINE,Alu
chr1	20976589	C	T	0.00125	PINK1,PINK1-AS	+,-	FALSE
chr1	28825427	A	G	0.00484	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr12	1602602	A	G	8.31525E-05	ERC1	+	FALSE	AluSx	SINE,Alu
chr1	36068295	T	C	0.00910	PSMB2	-	TRUE	AluSc	SINE,Alu
chr16	10624993	T	C	1.49189E-05	EMP2	-	TRUE	AluSx3	SINE,Alu
chr10	51374391	C	G	0.00028	TIMM23B	+	FALSE
chr1	1288481	C	A	0.00013	MXRA8	-	FALSE
chr3	9821914	C	T	7.78954E-06	TADA3	-	FALSE
chr1	214524576	T	C	0.00337	PTPN14	-	TRUE	AluSg	SINE,Alu
chr16	28296456	T	C	0.00772		.	FALSE	AluJb	SINE,Alu
chr16	10623544	T	C	2.29348E-06	EMP2	-	TRUE	AluSp	SINE,Alu
chr12	133298053	A	G	7.95391E-05	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	45504720	G	C	0.00759	ZSWIM5	-	FALSE
chr1	160967855	T	C	0.00042	F11R	-	TRUE	AluSp	SINE,Alu
chr1	16889503	T	C	0.00130	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr8	12880299	A	G	1.70760E-05	KIAA1456	+	TRUE	AluJo	SINE,Alu
chr15	23282589	A	G	0.00291	HERC2P2	-	FALSE
chr3	125033835	T	G	0.00385	ZNF148	-	FALSE	AluJb	SINE,Alu
chr1	200522059	A	T	0.00163	KIF14	-	FALSE	AluSg	SINE,Alu
chr12	51324122	A	G	0.00226	METTL7A	+	TRUE	AluSq2	SINE,Alu
chr1	93298756	T	C	0.00264	FAM69A,RPL5	+,-	FALSE	MER5C	SINE,Alu
chr19	35741552	C	T	0.00165	LSR	+	FALSE
chrX	123046302	A	G	0.00649	XIAP	+	TRUE	AluJb	SINE,Alu
chr1	55207982	C	A	0.00063	MROH7-TTC4,TTC4	+	FALSE
chr1	152187945	C	T	9.69718E-05	HRNR	-	FALSE	(GCCAGA)n	SINE,Alu
chr14	19685015	C	G	0.00069	DUXAP10	+	FALSE
chr1	16842064	A	C	0.00079		.	FALSE	MER41E	SINE,Alu
chr1	145513113	A	G	0.00505	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr3	88104073	G	C	0.00887	CGGBP1	-	FALSE
chr2	37429677	A	G	0.00279	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr19	63697	G	A	0.00742	WASH5P	-	FALSE
chr2	9630231	C	T	0.00895	ADAM17	-	FALSE
chr11	68523337	T	C	0.00016	CPT1A	-	TRUE	AluSq	SINE,Alu
chr1	206566195	C	T	0.00334	SRGAP2	+	FALSE
chr2	71214819	A	T	0.00346	TEX261	-	FALSE
chr1	150771703	T	C	0.00500	CTSK	-	FALSE
chr2	96915238	T	C	2.48142E-05		.	FALSE	AluJr	SINE,Alu
chr5	122359494	G	C	0.00043	PPIC	-	FALSE
chr1	9161365	T	C	4.68504E-05		.	FALSE	AluSx	SINE,Alu
chr7	300181	G	A	2.39021E-07	FAM20C	+	FALSE
chr17	49042206	T	C	0.00030	SPAG9	-	TRUE	AluJb	SINE,Alu
chr7	158536267	T	C	0.00298	ESYT2	-	FALSE
chr8	145159718	G	C	0.00409	MAF1	+	FALSE
chr8	30536544	T	C	5.33169E-07	GSR	-	TRUE	AluSp	SINE,Alu
chr1	27992825	G	A	0.00192	IFI6	-	FALSE
chr3	196670087	G	A	4.07177E-06	NCBP2-AS2	+	FALSE
chr1	212459257	A	G	0.00068	PPP2R5A	+	FALSE
chr1	6354955	G	A	0.00090	ACOT7	-	FALSE
chr1	89225976	T	C	0.00586	PKN2	+	FALSE
chr2	86251151	T	C	0.00882		.	FALSE	AluSx	SINE,Alu
chr1	182356399	A	G	0.00740	GLUL	-	FALSE
chr1	38478446	C	G	4.10892E-09	UTP11	+	FALSE
chr4	76568481	A	T	0.00744	G3BP2	-	FALSE	(TA)n	SINE,Alu
chr19	11257634	T	C	0.00823	SPC24	-	TRUE	AluSp	SINE,Alu
chr1	24798498	C	T	0.00131	NIPAL3	+	FALSE
chr2	61416407	G	T	0.00041	USP34	-	FALSE	AluSc8	SINE,Alu
chr3	181430334	G	A	0.00305	SOX2-OT,SOX2	+	FALSE
chr1	145512950	A	G	0.00996	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	22357435	A	C	0.00454	LINC00339	+	FALSE
chr3	33909024	A	T	0.00134	PDCD6IP	+	FALSE
chr1	220323448	C	T	0.00986	RAB3GAP2	-	FALSE
chr6	36894339	G	A	0.00650	C6orf89	+	FALSE	GA-rich	SINE,Alu
chr4	39550967	T	C	2.19217E-06	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	146400122	C	G	0.00190	NBPF20,NBPF10,NBPF25P,NBPF12	+	FALSE
chr1	10521172	T	C	1.01590E-06	DFFA	-	TRUE	AluY	SINE,Alu
chr2	68402796	C	T	0.00656	PNO1	+	FALSE
chr3	141879765	T	C	0.00212	GK5	-	TRUE	AluJr	SINE,Alu
chr8	30536544	T	C	0.00122	GSR	-	TRUE	AluSp	SINE,Alu
chr2	37331736	T	C	0.00165		.	FALSE	AluJb	SINE,Alu
chr7	120740103	G	T	0.00601	CPED1	+	FALSE

RBP	PNPT1
Knock-Method	shRNA
RBP Family	RNase_PH
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR191VWK
Platform	HiSeq
Pubmed ID	32252787

PNPT1 - Target Gene Network