RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	128620438	C	A	0.00230	AMMECR1L	-	FALSE
chr1	22419433	T	G	0.00156	CDC42	+	FALSE
chr17	41144251	T	G	0.00014	RUNDC1	+	FALSE
chr1	9643873	A	G	0.00064		.	FALSE	AluY	SINE,Alu
chr1	40537947	A	C	0.00295	CAP1	+	FALSE
chr3	196079305	T	C	0.00161		.	FALSE	AluSx	SINE,Alu
chr5	174956218	A	G	0.00953	SFXN1	+	TRUE	AluSp	SINE,Alu
chrX	77083617	T	C	3.46806E-05	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr1	16933135	G	T	0.00937	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	9163393	T	C	0.00327		.	FALSE	AluSp	SINE,Alu
chr1	79115905	T	C	0.00113	IFI44	+	FALSE
chr7	116437206	A	G	0.00118	MET	+	FALSE
chr1	145281543	C	T	0.00031	NBPF20,NOTCH2NL	+	FALSE
chr2	233446266	C	T	0.00177	EIF4E2	+	FALSE
chr1	41236854	T	A	0.00075	NFYC	+	FALSE	(T)n	SINE,Alu
chr1	145500925	T	A	0.00997	NBPF20,NBPF10,LIX1L	+	FALSE
chr2	61764920	C	A	0.00363	XPO1	-	FALSE
chr7	44841799	A	G	0.00693	PPIA	+	TRUE	AluSx	SINE,Alu
chr1	154554965	G	A	0.00019	ADAR	-	FALSE
chr1	1419823	A	G	0.00816	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr2	55452458	G	T	0.00113	CLHC1	-	FALSE
chr1	33148287	A	G	0.00052	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	16889624	T	C	0.00794	NBPF1	-	TRUE
chr3	99463810	G	T	0.00496	MIR548G,COL8A1	+,-	FALSE
chr2	85776832	C	T	0.00514	GGCX	-	FALSE
chr1	28836975	A	G	0.00202	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr7	6501819	A	T	0.00037	KDELR2	-	FALSE
chr1	33071096	A	G	0.00139	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr1	36534934	A	G	0.00464		.	FALSE	AluJo	SINE,Alu
chr1	10517314	T	C	0.00288		.	FALSE	AluJr	SINE,Alu
chr1	1650801	T	C	0.00761	CDK11B,CDK11A	-	FALSE
chr1	1337737	G	C	2.51903E-05	MRPL20	-	FALSE
chr1	180013235	T	G	0.00319	CEP350	+	FALSE
chr1	10521238	T	C	0.00096	DFFA	-	TRUE	AluY	SINE,Alu
chr2	99813003	A	G	0.00046	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	28785597	G	C	0.00595	PHACTR4	+	FALSE
chr12	56736075	C	T	0.00262	STAT2	-	FALSE	AluSp	SINE,Alu
chr3	15296357	A	T	3.39714E-05	SH3BP5,SH3BP5-AS1	+,-	FALSE
chr1	3395039	G	A	0.00027	ARHGEF16	+	FALSE
chr6	159396143	T	C	0.00185		.	FALSE	AluSc	SINE,Alu
chr1	94660609	C	T	0.00383	ARHGAP29	-	FALSE
chr1	156044222	G	T	0.00758	MEX3A	-	FALSE	(T)n	SINE,Alu
chr1	9160963	T	C	0.00130		.	FALSE	AluJb	SINE,Alu
chr1	63881552	C	T	0.00021	ALG6	+	FALSE
chr3	10192596	A	G	7.92003E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	19586532	A	G	0.00188	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	110023610	G	A	0.00636	SYPL2	+	FALSE
chr1	182569318	G	T	0.00101	RGS16	-	FALSE
chr1	44035352	C	T	0.00055	PTPRF	+	FALSE
chr6	13790888	T	C	0.00442	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr16	713251	A	G	0.00628	WDR90	+	TRUE	AluSx	SINE,Alu
chr19	19792288	A	G	0.00379	ZNF101	+	TRUE	AluJb	SINE,Alu
chr1	148556726	G	T	0.00758		.	FALSE
chr2	242447628	T	G	0.00674	STK25	-	FALSE
chr14	75202402	A	G	0.00141	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	6583538	T	C	0.00455	NOL9	-	TRUE	AluSq	SINE,Alu
chr1	23835794	A	G	0.00132	E2F2	-	FALSE
chr5	32124827	G	T	0.00047	GOLPH3	-	FALSE
chr1	156163906	C	T	0.00130	SLC25A44	+	FALSE
chr14	75202698	A	G	6.15110E-05	FCF1	+	TRUE	AluSc	SINE,Alu
chr5	79923292	C	G	0.00305	DHFR	-	FALSE	AluJr	SINE,Alu
chr1	234740975	G	A	0.00106	IRF2BP2	-	FALSE
chr1	67451521	A	T	0.00049	MIER1	+	FALSE
chr2	86947783	C	T	0.00515	RNF103-CHMP3,RMND5A	+,-	FALSE
chr3	56655865	A	G	0.00970	FAM208A	-	FALSE	(A)n	SINE,Alu
chr1	36602178	A	T	0.00764	TRAPPC3	-	FALSE
chr2	102508658	T	A	0.00275	MAP4K4	+	FALSE
chr5	151041874	A	C	0.00060	SPARC	-	FALSE
chr1	6583066	T	C	0.00180	NOL9	-	TRUE	AluSx4	SINE,Alu
chr1	183094547	T	C	0.00277	LAMC1	+	FALSE
chr1	10519982	T	C	0.00417		.	FALSE	AluJr	SINE,Alu
chr1	28825805	G	A	0.00115	PHACTR4	+	FALSE	AluSp	SINE,Alu
chr3	44791398	T	C	0.00204	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr3	5260057	A	T	0.00117	EDEM1	+	FALSE
chr4	7761114	G	A	8.00249E-13	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	28825418	A	G	0.00046	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	1534205	G	A	1.69659E-11	FNDC10	-	FALSE
chr8	56985611	A	T	0.00028	RPS20	-	FALSE
chrX	54587290	A	G	0.00504	GNL3L	+	TRUE	AluSq2	SINE,Alu
chr1	145513017	A	G	0.00037	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	205687358	T	C	0.00432	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr9	37503313	A	G	0.00584	POLR1E	+	TRUE	AluJb	SINE,Alu
chr9	136209396	C	T	0.00126	MED22	-	FALSE
chr1	32385070	T	A	0.00593	PTP4A2	-	FALSE
chr2	24227417	A	G	0.00831		.	FALSE	AluSc	SINE,Alu
chr1	156564726	T	C	0.00995	GPATCH4	-	FALSE
chr5	149363214	A	G	0.00040	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr18	28571649	A	T	0.00301	DSC3	-	FALSE	MER65C	SINE,Alu
chr1	28836900	A	G	0.00311	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr1	1718810	G	A	5.85228E-05	GNB1	-	FALSE
chr1	28825418	A	G	0.00961	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr8	104343686	G	A	0.00031	FZD6	+	FALSE
chr1	110913120	C	T	0.00627	SLC16A4	-	FALSE
chr5	109204057	T	A	0.00614	MAN2A1	+	FALSE
chr12	125512540	A	G	7.43833E-09		.	FALSE
chr1	10519048	T	C	0.00637		.	FALSE	AluSx3	SINE,Alu
chr2	204055454	T	C	0.00293	NBEAL1	+	FALSE
chr1	145512073	A	G	0.00066	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr7	135291501	T	C	0.00627	NUP205	+	FALSE
chr1	244572645	T	G	0.00103	ADSS	-	FALSE
chr1	52375677	T	C	0.00542	RAB3B	-	FALSE	MIRb	SINE,Alu
chr1	11347150	C	A	0.00016	UBIAD1	+	FALSE
chr2	69548320	C	T	7.68354E-05	GFPT1	-	FALSE
chr1	10518756	T	C	0.00600		.	FALSE	AluSx1	SINE,Alu
chr1	40974799	T	C	0.00038	EXO5	+	FALSE
chr1	144932151	G	T	0.00294	NBPF20,PDE4DIP	+,-	FALSE
chr1	27861184	G	T	0.00425	AHDC1	-	FALSE	(TCTTTT)n	SINE,Alu
chr3	41281407	G	T	0.00011	CTNNB1	+	FALSE
chr19	39433138	G	A	0.00276	FBXO17	-	FALSE	AluJb	SINE,Alu
chr17	57279234	A	G	0.00293	PRR11	+	TRUE	AluSq2	SINE,Alu
chr14	63841402	A	C	0.00692	PPP2R5E	-	FALSE
chr1	36068369	T	C	0.00207	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	185069687	C	T	0.00072	RNF2	+	FALSE
chr16	10623566	T	C	0.00019	EMP2	-	TRUE	AluSp	SINE,Alu
chr15	40955103	A	G	0.00372		.	FALSE	AluJb	SINE,Alu
chr1	224575827	T	C	0.00214	WDR26	-	FALSE
chr5	82877162	G	A	0.00296	VCAN	+	FALSE	(A)n	SINE,Alu
chr1	46032974	T	C	0.00196	AKR1A1	+	FALSE
chr5	150647719	T	C	0.00112	GM2A	+	FALSE	AluSc	SINE,Alu
chr1	36770073	A	T	4.33965E-05	THRAP3	+	FALSE
chr1	145512166	T	A	0.00823	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	10521103	T	C	0.00788	DFFA	-	TRUE	AluY	SINE,Alu
chr4	56295160	T	A	0.00187	CLOCK	-	FALSE	(T)n	SINE,Alu
chr19	58356376	A	G	0.00061	ZNF587B	+	TRUE	AluSx	SINE,Alu
chr5	56177848	T	A	0.00986	MAP3K1	+	FALSE
chr2	86249906	T	C	0.00352	LOC90784	-	TRUE	AluJr	SINE,Alu
chr2	69688917	T	C	0.00254	AAK1	-	TRUE	AluSq2	SINE,Alu
chr2	216903620	T	C	0.00623	PECR	-	TRUE	AluSx3	SINE,Alu
chr3	195415493	C	T	0.00126	LINC00969,SDHAP2	+	FALSE	L1ME2	SINE,Alu
chr1	16893691	C	A	0.00170	NBPF1	-	FALSE
chr1	207942432	A	G	0.00029	CD46	+	TRUE	AluSg4	SINE,Alu
chr2	56150885	G	A	0.00624	EFEMP1	-	FALSE
chr1	45975358	A	G	0.00089	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr14	64951277	T	C	0.00077	ZBTB25	-	TRUE	AluSp	SINE,Alu
chr1	224380498	A	G	6.58460E-05	DEGS1	+	TRUE	AluSx	SINE,Alu
chr1	1252513	T	C	0.00670	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr5	148382005	C	A	8.42472E-06	SH3TC2	-	FALSE
chr1	90401562	C	A	0.00057	LRRC8D	+	FALSE
chr1	150337289	G	T	0.00020	RPRD2	+	FALSE
chr2	8996878	A	T	9.26766E-05	MBOAT2	-	FALSE	AluSz	SINE,Alu
chr1	2520435	G	C	0.00041	FAM213B	+	FALSE
chr1	28661576	A	G	0.00625	MED18	+	TRUE	AluSg	SINE,Alu
chr1	28835934	A	G	0.00069	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	100489452	A	G	0.00741	SLC35A3	+	TRUE	AluSc	SINE,Alu
chr1	26608009	T	A	0.00496	SH3BGRL3	+	FALSE
chr6	42856156	A	G	0.00105	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr4	95586224	A	G	0.00053	PDLIM5	+	FALSE
chr1	180247476	T	C	0.00890		.	FALSE
chr1	24999468	G	T	0.00075	SRRM1	+	FALSE	(T)n	SINE,Alu
chr8	11666384	C	T	0.00029	FDFT1	+	FALSE
chr1	173457017	C	T	0.00036	PRDX6	+	FALSE
chr1	226923264	G	A	0.00046	ITPKB	-	FALSE
chr12	56510704	G	A	0.00042	RPL41	+	FALSE
chr1	86049302	A	G	0.00114	CYR61	+	FALSE
chr1	36642420	T	C	0.00162	MAP7D1	+	FALSE
chr3	99515750	A	G	2.61553E-11	MIR548G	-	FALSE
chr17	57281021	A	G	1.37320E-05	PRR11	+	TRUE	AluSz	SINE,Alu
chr10	102121601	A	G	0.00000	SCD	+	TRUE	MLT1L	SINE,Alu
chr1	20976759	C	T	2.31016E-05	PINK1,PINK1-AS	+,-	FALSE
chr1	10517306	T	C	0.00176		.	FALSE	AluJr	SINE,Alu
chr1	16344402	G	A	0.00168	HSPB7	-	FALSE	L3	SINE,Alu
chr4	56295161	T	A	0.00075	CLOCK	-	FALSE	(T)n	SINE,Alu
chr2	39010088	A	G	0.00192		.	FALSE	AluSp	SINE,Alu
chr1	38463504	C	T	0.00068	FHL3	-	FALSE
chr2	70316299	C	A	0.00650	PCBP1	+	FALSE
chr1	65897981	G	A	0.00025	LEPR,LEPROT	+	FALSE
chr1	145324364	C	G	0.00343	NBPF20,NBPF10	+	FALSE
chr1	241796949	G	A	0.00053	OPN3,CHML	-	FALSE
chr1	94352570	G	T	0.00097	GCLM	-	FALSE	AluSx1	SINE,Alu
chr1	144606996	G	C	0.00107	NBPF20	+	FALSE
chr1	20977748	T	G	0.00474	PINK1,PINK1-AS	+,-	FALSE
chr19	59095456	A	G	0.00125	CENPBD1P1	+	TRUE	AluJb	SINE,Alu
chr1	85785557	T	A	0.00141	DDAH1	-	FALSE
chr3	184429718	A	G	0.00914	MAGEF1	-	FALSE
chr1	144822294	G	C	0.00371	NBPF20,NBPF9	+	FALSE
chr1	160966301	T	C	8.33949E-06	F11R	-	TRUE	AluSg	SINE,Alu
chr5	115428334	G	T	0.00265	COMMD10	+	FALSE
chr7	5085646	C	T	0.00168	RBAK-RBAKDN,RBAK	+	FALSE
chr1	162494683	G	T	0.00269	UHMK1	+	FALSE	AluSg4	SINE,Alu
chr12	6840209	G	A	0.00820	COPS7A	+	FALSE
chr1	6582498	T	C	0.00403	NOL9	-	TRUE	AluSx1	SINE,Alu
chr1	31342374	A	C	0.00446	SDC3	-	FALSE	(A)n	SINE,Alu
chr8	145159707	G	C	0.00158	MAF1	+	FALSE
chr1	1252468	T	C	0.00182	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr3	195964298	A	G	0.00263		.	FALSE
chr17	47007752	A	T	0.00029	SNF8	-	FALSE
chr19	11560438	A	G	7.61449E-05	PRKCSH	+	FALSE	AluSx	SINE,Alu
chr3	62282907	C	T	9.50704E-05	PTPRG-AS1	-	FALSE
chr1	79108421	A	T	7.77428E-05	IFI44L	+	FALSE
chr2	237035915	C	G	0.00348	AGAP1	+	FALSE
chr1	54382632	T	C	0.00219		.	FALSE	AluSq2	SINE,Alu
chr1	86046472	G	T	0.00409	CYR61	+	FALSE
chr4	56298300	G	A	7.51019E-06	CLOCK	-	FALSE
chr1	160967856	T	C	0.00027	F11R	-	TRUE	AluSp	SINE,Alu
chr6	42855200	A	G	2.13337E-05	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	38279666	C	T	0.00521	MTF1	-	FALSE	(T)n	SINE,Alu
chr1	100656265	C	T	0.00318	DBT	-	FALSE
chr1	1597423	C	T	1.10134E-13	CDK11B,SLC35E2B	-	FALSE
chrX	77083982	T	C	0.00086	MAGT1	-	TRUE	AluSz	SINE,Alu
chr2	206987632	T	C	0.00671		.	FALSE	AluJb	SINE,Alu
chr1	149913513	T	C	0.00495	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr5	110463621	G	T	0.00786	WDR36	+	FALSE	(T)n	SINE,Alu
chr4	2070260	G	A	0.00724	NAT8L	+	FALSE	(TG)n	SINE,Alu
chr19	19793168	A	G	0.00481	ZNF101	+	TRUE	AluSz	SINE,Alu
chr1	231468953	G	A	0.00085	EXOC8	-	FALSE
chr1	3545204	C	G	0.00829	TPRG1L	+	FALSE
chr11	74551853	A	C	0.00079	RNF169	+	FALSE
chr1	205737665	G	T	0.00025	RAB29	-	FALSE	AluSq2	SINE,Alu
chr19	57816349	A	G	8.96695E-06		.	FALSE	AluY	SINE,Alu
chr6	158613390	T	C	0.00416	GTF2H5	+	FALSE
chr1	205739266	C	T	0.00069	RAB29	-	FALSE
chr1	26603883	G	A	0.00660	CEP85	+	FALSE
chr3	57612314	T	C	0.00529	DENND6A,PDE12	+,-	FALSE	AluSp	SINE,Alu
chr16	19715543	T	C	0.00879		.	FALSE	AluSg	SINE,Alu
chr1	70717293	G	A	0.00716	SRSF11	+	FALSE
chr1	16892256	T	C	0.00370	NBPF1	-	FALSE
chr1	1650657	C	G	0.00379	CDK11B,CDK11A	-	FALSE
chr2	38522138	G	T	8.89010E-06	ATL2	-	FALSE
chr1	153907287	G	C	0.00122	DENND4B	-	FALSE	(CTG)n	SINE,Alu
chr5	96372165	G	A	0.00149		.	FALSE
chr1	21779925	T	G	0.00860	NBPF3	+	FALSE	ERVL-E-int	SINE,Alu
chr1	19586135	C	T	0.00063	MRTO4	+	FALSE
chr9	114696428	G	T	0.00163	UGCG	+	FALSE	(TGTTTTT)n	SINE,Alu
chr12	6601329	C	T	3.97278E-05	MRPL51	-	FALSE
chr1	146627405	C	G	0.00074	PRKAB2	-	FALSE
chr13	31033325	C	A	0.00792	HMGB1	-	FALSE
chr4	3242223	G	A	0.00073	HTT	+	FALSE
chr1	230416412	C	G	0.00514	GALNT2	+	FALSE
chr7	94060363	T	G	2.98576E-06	COL1A2	+	FALSE
chr1	1597403	C	T	0.00912	CDK11B,SLC35E2B	-	FALSE
chr3	156258283	T	C	0.00686	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	120165040	T	C	0.00107	ZNF697	-	FALSE
chr10	13320123	C	A	0.00830	PHYH	-	FALSE
chr1	92975244	T	A	0.00220	EVI5	-	FALSE
chr6	53363497	A	G	0.00106	GCLC	-	FALSE
chr1	1252184	A	G	0.00778	CPSF3L	-	FALSE	AluSx	SINE,Alu
chr3	119212010	A	G	0.00685	POGLUT1	+	FALSE
chr2	91847976	C	T	0.00010		.	FALSE	TAR1	SINE,Alu
chr10	64911911	A	G	0.00908	NRBF2	+	FALSE
chr17	57281125	A	G	0.00204	PRR11	+	TRUE	AluSz	SINE,Alu
chr1	145291217	C	T	0.00415	NBPF20	+	FALSE
chr2	26617209	A	G	5.06124E-05	EPT1	+	FALSE	AluSz	SINE,Alu
chr1	26143727	A	T	0.00917	SEPN1	+	FALSE	AluSx	SINE,Alu
chr8	11700737	T	C	0.00126	CTSB	-	TRUE	AluSg	SINE,Alu
chr3	197400501	C	G	0.00270	RUBCN	-	FALSE
chr1	212277616	C	T	0.00248	DTL	+	FALSE

RBP	EIF4G2
Knock-Method	shRNA
RBP Family	MIF4G
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR040FSN
Platform	HiSeq
Pubmed ID	32252787

EIF4G2 - Target Gene Network