RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr9	130268407	C	G	0.00902	FAM129B	-	FALSE	(CTCA)n	SINE,Alu
chr1	9328243	A	G	0.00616	H6PD	+	TRUE	AluJr	SINE,Alu
chr10	63954812	A	C	0.00641	RTKN2	-	FALSE
chr19	21304019	A	G	0.00111	ZNF714	+	TRUE	AluY	SINE,Alu
chr2	109401285	G	A	0.00087	RANBP2	+	FALSE
chr16	75479467	T	C	0.00160	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr4	6677063	G	A	0.00087	LOC93622	+	FALSE
chr1	25894471	G	A	0.00778	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr2	37431604	A	G	0.00876	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr1	183155546	G	A	0.00103	LAMC2	+	FALSE
chr2	206987096	T	C	0.00795		.	FALSE	AluSx	SINE,Alu
chr19	63633	C	T	0.00999	WASH5P	-	FALSE	MLT1K	SINE,Alu
chr1	200375837	T	G	0.00490	ZNF281	-	FALSE	(T)n	SINE,Alu
chr1	20976759	C	T	2.31016E-05	PINK1,PINK1-AS	+,-	FALSE
chr2	189877305	T	C	0.00612	COL3A1	+	FALSE
chr1	184761365	A	G	0.00758	FAM129A	-	FALSE	AluJo	SINE,Alu
chr1	10221302	G	A	0.00119	UBE4B	+	FALSE
chr7	924602	A	G	0.00195	GET4	+	TRUE	AluJb	SINE,Alu
chr3	170021211	A	C	3.61705E-05	PRKCI	+	FALSE
chr13	96506664	A	G	5.36176E-05	UGGT2	-	FALSE
chr1	92862826	A	G	0.00100		.	FALSE	AluJr	SINE,Alu
chr5	64097145	C	G	0.00361	CWC27	+	FALSE
chr1	33148691	A	G	0.00032	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr14	103372469	A	C	0.00683	TRAF3	+	FALSE	(AC)n	SINE,Alu
chr1	982994	T	C	0.00432	AGRN	+	FALSE
chr11	73387540	G	A	0.00438	RAB6A	-	FALSE
chr1	1597403	C	T	0.00912	CDK11B,SLC35E2B	-	FALSE
chr7	20177613	T	C	0.00913	MACC1,LOC101927668	-	TRUE	AluSx	SINE,Alu
chr4	17802819	T	C	0.00409	DCAF16	-	TRUE	AluSz	SINE,Alu
chr3	100083426	C	T	0.00908	TOMM70	-	FALSE	FAM	SINE,Alu
chr5	79279310	T	A	0.00173	MTX3	-	FALSE
chr1	204524357	A	G	0.00568	MDM4	+	TRUE	AluY	SINE,Alu
chr1	19542250	T	C	9.94571E-09	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	10193796	A	G	0.00493	VHL	+	TRUE	AluSx	SINE,Alu
chr2	61370704	T	A	0.00747	LOC339803	-	FALSE
chr1	121133779	C	G	2.29819E-05	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr6	13788387	T	C	0.00240	MCUR1	-	TRUE	AluSx	SINE,Alu
chr3	10322521	T	C	0.00531	TATDN2	+	FALSE
chr1	10520067	T	C	2.08449E-05		.	FALSE	AluSx	SINE,Alu
chr1	45452227	G	C	0.00126	EIF2B3	-	FALSE
chr7	112579815	G	T	0.00997	BMT2	-	FALSE	(CGC)n	SINE,Alu
chr2	37329300	T	C	0.00050		.	FALSE	AluJr4	SINE,Alu
chr1	145369706	T	C	0.00186	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	3545198	T	C	0.00013	TPRG1L	+	FALSE
chr1	33148210	A	G	0.00778	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	24128467	C	T	0.00481	HMGCL	-	FALSE
chr9	130268408	T	C	6.51633E-05	FAM129B	-	FALSE	(CTCA)n	SINE,Alu
chr2	32535747	A	G	0.00250		.	FALSE	AluJb	SINE,Alu
chr1	16254872	C	A	1.11022E-16	SPEN	+	FALSE
chr1	120695749	A	G	0.00130		.	FALSE
chr17	18111804	T	G	0.00487	ALKBH5	+	FALSE	(TTTTGTT)n	SINE,Alu
chr1	115110683	A	C	0.00168	BCAS2	-	FALSE
chr1	144931330	C	T	0.00194	NBPF20,PDE4DIP	+,-	FALSE
chr4	39552066	T	C	0.00370	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr1	67881005	C	T	0.00776	SERBP1	-	FALSE
chr3	196556843	G	A	4.00732E-06	PAK2	+	FALSE
chr6	3021360	T	C	0.00321	HTATSF1P2	-	TRUE	AluJr4	SINE,Alu
chr1	78142985	T	C	0.00012	ZZZ3	-	TRUE	AluSx	SINE,Alu
chr20	25427865	A	G	0.00018	GINS1	+	FALSE	AluSz	SINE,Alu
chr2	114513901	C	T	0.00655	SLC35F5	-	FALSE
chr2	37331531	T	C	0.00148		.	FALSE	AluJb	SINE,Alu
chr1	3545204	C	G	0.00829	TPRG1L	+	FALSE
chr4	153545691	T	C	0.00671		.	FALSE	AluJb	SINE,Alu
chr19	44418680	G	C	0.00066	ZNF45	-	FALSE
chr1	206669958	G	A	0.00347	IKBKE	+	FALSE
chr1	14106402	A	T	0.00914	PRDM2	+	FALSE
chr6	42855962	A	G	0.00045	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	31905905	G	C	0.00028	SERINC2	+	FALSE
chr2	277003	A	G	1.77913E-11	ACP1	+	FALSE
chr1	197125427	T	C	0.00331	ZBTB41	-	FALSE
chr19	9673107	T	C	1.71894E-07		.	FALSE	AluSx3	SINE,Alu
chr3	122447574	A	C	0.00224	PARP14	+	FALSE
chr1	46077218	A	G	0.00783	NASP	+	TRUE	AluSc8	SINE,Alu
chr4	25749192	C	T	0.00642	SEL1L3	-	FALSE
chr12	120898728	A	G	0.00566	GATC	+	TRUE	AluY	SINE,Alu
chr15	41597559	A	G	0.00127		.	FALSE	AluSz6	SINE,Alu
chr19	46053316	T	C	4.53847E-05	OPA3	-	TRUE	AluSx1	SINE,Alu
chr1	226352498	T	G	0.00636	ACBD3	-	FALSE
chr1	100658578	G	A	0.00030	DBT	-	FALSE
chr16	10623531	T	C	1.32618E-09	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	111682307	G	C	5.71833E-05	DRAM2,CEPT1	+,-	FALSE
chrX	77083915	T	C	0.00075	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	10517513	T	C	0.00982		.	FALSE	AluSx1	SINE,Alu
chr2	187544222	A	G	0.00411	ITGAV	+	FALSE
chr2	233446265	T	C	0.00177	EIF4E2	+	FALSE
chr3	14186757	C	G	0.00864	XPC	-	FALSE
chr1	9328242	A	G	0.00018	H6PD	+	TRUE	AluJr	SINE,Alu
chr5	37291504	T	C	0.00878		.	FALSE	AluSx3	SINE,Alu
chr1	10519982	T	C	3.22355E-05		.	FALSE	AluJr	SINE,Alu
chr1	10517290	T	C	0.00119		.	FALSE	AluJr	SINE,Alu
chr1	204526648	A	G	0.00302	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	11150682	C	T	3.65592E-05	EXOSC10	-	FALSE
chr1	53288894	A	G	8.27269E-06	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	156044222	G	T	0.00758	MEX3A	-	FALSE	(T)n	SINE,Alu
chr1	52253793	C	T	0.00966	OSBPL9	+	FALSE
chr7	55266417	T	C	0.00201	EGFR	+	FALSE
chr5	79923843	T	C	0.00363	DHFR	-	TRUE	AluSp	SINE,Alu
chr1	100658578	G	A	0.00382	DBT	-	FALSE
chr1	70904800	G	T	0.00772	CTH	+	FALSE
chr2	85772404	C	A	0.00015	GGCX	-	FALSE
chr2	206986314	T	C	0.00936		.	FALSE	AluSz	SINE,Alu
chr2	204298783	A	C	0.00179	RAPH1	-	FALSE	(AT)n	SINE,Alu
chr7	17384818	A	G	0.00241	AHR	+	TRUE	AluSc	SINE,Alu
chr1	1001422	G	T	0.00998		.	FALSE	LTR13A	SINE,Alu
chr10	70502288	G	A	0.00347	CCAR1	+	FALSE
chr1	109465171	T	A	0.00989	GPSM2	+	FALSE
chr6	13790888	T	C	0.00442	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr1	179044242	A	G	0.00335	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	10043363	A	G	0.00429	NMNAT1	+	TRUE	AluSx3	SINE,Alu
chr7	44618448	A	G	0.00962	TMED4	-	FALSE	AluSq2	SINE,Alu
chr1	114940216	T	G	0.00207	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	201488771	A	G	0.00062		.	FALSE	AluSq2	SINE,Alu
chr1	16723840	G	A	0.00072	SZRD1	+	FALSE
chr6	107113955	A	G	0.00265	QRSL1	+	TRUE	AluSg	SINE,Alu
chr1	46075791	A	G	0.00120	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	89237556	C	T	0.00840	PKN2	+	FALSE
chr1	145688943	A	G	0.00492	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr2	217366590	A	G	0.00013		.	FALSE	AluSz	SINE,Alu
chr1	41204569	C	T	0.00854	NFYC	+	FALSE
chr1	145688983	A	G	0.00072	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr7	100957851	T	C	0.00028	LOC101927746,IFT22	+,-	FALSE	MADE1	SINE,Alu
chr2	206983075	T	C	0.00083		.	FALSE	AluJb	SINE,Alu
chr1	67874697	T	C	4.44446E-05	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr17	43364288	A	G	0.00345	MAP3K14	-	FALSE
chr4	2940364	T	C	0.00718	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr5	81571876	A	T	0.00092	RPS23	-	FALSE
chr10	117823569	G	A	0.00391	GFRA1	-	FALSE	(ATC)n	SINE,Alu
chr2	101623533	C	T	0.00784	RPL31	+	FALSE
chr1	168218522	A	G	0.00153		.	FALSE	AluSz	SINE,Alu
chr1	115119377	A	T	0.00157	BCAS2	-	FALSE
chr2	11053740	C	T	0.00402	KCNF1	+	FALSE
chr1	20826788	A	T	6.12716E-05	MUL1	-	FALSE
chr1	231468953	G	A	0.00085	EXOC8	-	FALSE
chr12	133298339	A	G	1.45756E-07	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	9643106	A	G	0.00088		.	FALSE	AluSx	SINE,Alu
chr1	21544601	C	T	0.00196	ECE1	-	FALSE
chr9	80886829	C	A	6.48097E-06		.	FALSE	(TTTCTTTT)n	SINE,Alu
chr1	53288897	A	G	0.00439	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr3	156258273	T	C	0.00927	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	36068370	T	C	0.00789	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	45975345	A	G	0.00120	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	117530477	G	A	0.00223	PTGFRN	+	FALSE
chr17	29578724	C	T	0.00514	NF1	+	FALSE
chr10	102308801	G	C	0.00127	HIF1AN	+	FALSE	(GT)n	SINE,Alu
chr1	92975262	C	A	0.00238	EVI5	-	FALSE
chr1	10517623	T	C	8.06723E-05		.	FALSE	AluSx1	SINE,Alu
chr1	244219905	G	T	0.00772	ZBTB18	+	FALSE
chr1	207942482	A	G	0.00715	CD46	+	TRUE	AluSg4	SINE,Alu
chr3	196660344	T	A	0.00366	SENP5	+	FALSE
chr1	79356178	C	A	0.00678	ADGRL4	-	FALSE
chr1	10517635	T	C	0.00124		.	FALSE	AluSx1	SINE,Alu
chr1	28835847	A	G	4.14471E-06	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr4	89181478	T	C	0.00656	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr17	45219755	G	T	0.00592	CDC27	-	FALSE
chr1	19595137	C	T	0.00085	AKR7L	-	FALSE
chr2	133104541	A	G	0.00109		.	FALSE
chrX	77084042	T	C	0.00703	MAGT1	-	TRUE	AluSz	SINE,Alu
chr3	195243006	C	A	7.17300E-06	PPP1R2	-	FALSE
chr2	47387306	G	T	0.00026	CALM2	-	FALSE
chr1	38275432	G	T	0.00536	MTF1	-	FALSE
chr1	246714587	G	A	0.00150	TFB2M	-	FALSE
chr1	85647107	T	C	0.00255	SYDE2	-	TRUE	AluSx	SINE,Alu
chr2	37331065	T	C	0.00017		.	FALSE	AluSx1	SINE,Alu
chr9	131071533	T	C	0.00168	TRUB2	-	TRUE	FAM	SINE,Alu
chr1	70611296	A	T	0.00061	LRRC40	-	FALSE
chr5	95223443	C	T	0.00255	ELL2	-	FALSE
chr1	16958064	A	G	0.00446		.	FALSE
chr2	197001673	T	C	0.00043	STK17B	-	FALSE
chr1	145689611	C	A	0.00142	NBPF20,NBPF10	+	FALSE	AluSg	SINE,Alu
chr19	39433141	A	G	0.00224	FBXO17	-	FALSE	AluJb	SINE,Alu
chr2	20401856	T	G	0.00265	SDC1	-	FALSE
chr1	35648714	A	T	0.00841	SFPQ	-	FALSE
chr1	44818525	T	C	0.00235	ERI3	-	FALSE
chr2	55516937	G	T	0.00250	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr4	128756656	A	G	0.00022		.	FALSE	AluSx	SINE,Alu
chr1	66058513	A	G	0.00091	LEPR	+	FALSE
chr17	42880118	T	C	0.00140	GJC1	-	TRUE	AluJb	SINE,Alu
chr1	77557891	T	C	0.00557	PIGK	-	FALSE
chr1	10421878	A	G	7.26627E-05	KIF1B	+	FALSE
chr1	36534830	A	G	0.00470		.	FALSE	AluJo	SINE,Alu
chr6	109785887	T	C	7.14632E-06	MICAL1,ZBTB24	-	TRUE	AluJr	SINE,Alu
chr1	35319580	T	A	0.00988	SMIM12	-	FALSE	AluSg	SINE,Alu
chr1	10520378	T	C	0.00145		.	FALSE	AluSx1	SINE,Alu
chr2	105883650	T	G	0.00086	TGFBRAP1	-	FALSE
chr4	247533	A	G	0.00972	ZNF876P	+	FALSE
chr1	78414329	G	A	0.00922	FUBP1	-	FALSE	A-rich	SINE,Alu
chr1	31405707	G	T	0.00431	PUM1	-	FALSE
chr5	125961661	A	G	4.29043E-06	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	1595540	T	C	0.00830	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr16	31469051	T	C	0.00278		.	FALSE	AluSz	SINE,Alu
chr1	109465170	T	C	0.00565	GPSM2	+	FALSE
chr1	26161129	A	C	0.00607	AUNIP	-	FALSE
chr1	36770607	T	C	0.00171	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	10521254	T	C	0.00640	DFFA	-	TRUE	AluY	SINE,Alu
chr1	15909744	C	T	0.00100	AGMAT	-	FALSE
chr1	15993699	C	A	0.00420		.	FALSE	AluSx4	SINE,Alu
chr7	99636950	A	G	0.00927	ZKSCAN1	+	FALSE	AluSx1	SINE,Alu
chr1	33149496	A	G	0.00662	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr2	37328013	T	C	0.00765		.	FALSE
chr1	36068281	T	C	0.00201	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	89649369	T	C	0.00019	GBP4	-	TRUE	AluJb	SINE,Alu
chr1	10367058	G	A	0.00328	KIF1B	+	FALSE
chr2	201774775	T	C	0.00872		.	FALSE	AluJr4	SINE,Alu
chr2	239972080	T	A	0.00136	HDAC4	-	FALSE
chr1	53684924	A	G	0.00913	C1orf123	-	FALSE	L1MA5A	SINE,Alu
chr1	144822294	G	C	0.00371	NBPF20,NBPF9	+	FALSE
chr1	33148691	A	G	0.00547	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	74672640	T	A	0.00011	FPGT-TNNI3K,FPGT	+	FALSE
chr3	124948047	C	G	0.00670	ZNF148	-	FALSE
chr1	59122871	C	T	0.00863	MYSM1	-	FALSE
chr1	33071096	A	G	0.00139	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr1	86046472	G	T	0.00409	CYR61	+	FALSE
chr9	128729384	G	C	0.00059	PBX3	+	FALSE
chr4	38016395	T	G	0.00537	TBC1D1	+	FALSE
chr1	16890421	G	A	0.00024	NBPF1	-	FALSE
chr3	184300061	T	C	0.00518	EPHB3	+	FALSE	(TG)n	SINE,Alu
chr1	15905501	G	A	0.00359	AGMAT	-	FALSE
chr3	37368755	T	A	9.43816E-08	GOLGA4	+	FALSE
chr1	1684347	C	T	0.00550	NADK	-	FALSE
chr10	13320236	C	T	0.00011	PHYH	-	FALSE
chr1	6282324	T	C	0.00013	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	146400122	C	G	0.00190	NBPF20,NBPF10,NBPF25P,NBPF12	+	FALSE
chr1	144615138	T	G	0.00196	NBPF20,NBPF9	+	FALSE
chr1	28835934	A	G	0.00193	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	10521170	T	C	0.00538	DFFA	-	TRUE	AluY	SINE,Alu
chr1	118502771	A	G	0.00466	WDR3,SPAG17	+,-	FALSE	(GT)n	SINE,Alu
chr1	101444065	T	C	0.00927	SLC30A7	+	FALSE	MIR3	SINE,Alu
chr15	91044379	T	G	0.00440	IQGAP1	+	FALSE
chr1	326500	A	G	0.00189		.	FALSE
chr1	11347154	A	T	0.00441	UBIAD1	+	FALSE
chr2	206986233	T	C	0.00545		.	FALSE	AluSz	SINE,Alu
chr2	55516938	A	T	0.00265	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	19585207	G	A	0.00672	MRTO4	+	FALSE
chr2	242122440	C	A	0.00354	PPP1R7	+	FALSE
chr1	149819554	T	C	0.00137		.	FALSE	MLT1C2	SINE,Alu
chr1	20519808	G	A	0.00882	UBXN10	+	FALSE
chr17	19091395	C	T	0.00852		.	FALSE	U3	SINE,Alu
chr1	67874705	T	C	0.00015	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	145375869	G	A	0.00480	NBPF20,NBPF10	+	FALSE
chr12	125512540	A	G	7.43833E-09		.	FALSE
chr4	2940434	T	C	1.52137E-05	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr4	6644459	C	A	0.00109	MRFAP1	+	FALSE
chr1	100490274	A	G	0.00849	SLC35A3	+	TRUE	AluSc5	SINE,Alu
chr1	53366576	A	G	0.00484	ECHDC2	-	FALSE	AluJb	SINE,Alu
chr3	149237753	G	A	2.17555E-05	WWTR1	-	FALSE	AluSq2	SINE,Alu
chr14	74524774	T	C	0.00906	BBOF1,ALDH6A1	+,-	FALSE	AluSc8	SINE,Alu
chr1	1595500	T	C	0.00482	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	21070406	C	A	0.00671	HP1BP3	-	FALSE	AluSx	SINE,Alu
chr3	193854148	T	A	0.00106	HES1	+	FALSE
chr1	36794266	A	G	0.00141		.	FALSE	AluJb	SINE,Alu
chr4	187647832	C	G	0.00592		.	FALSE
chr3	14986104	T	C	6.10128E-05	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr5	96372165	G	A	0.00149		.	FALSE
chr5	52393421	C	T	0.00144	MOCS2	-	FALSE	L1MA9	SINE,Alu
chr5	151041869	T	A	0.00305	SPARC	-	FALSE
chr7	129472356	C	T	0.00279	UBE2H	-	FALSE
chr16	10623577	T	C	0.00408	EMP2	-	TRUE	AluSp	SINE,Alu
chr17	41133090	A	T	0.00148	RUNDC1	+	FALSE
chr1	32373858	A	T	0.00100	PTP4A2	-	FALSE
chr1	10520178	T	C	0.00112		.	FALSE	AluSx	SINE,Alu
chr1	138980	G	T	0.00608	LOC729737	-	FALSE
chr2	202029998	T	A	0.00350	CFLAR	+	FALSE	(TTA)n	SINE,Alu
chr1	35658211	G	T	1.28982E-07	SFPQ	-	FALSE
chr1	33148621	A	G	0.00754	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr12	32532499	A	T	0.00119		.	FALSE
chr4	2743678	G	A	0.00170	TNIP2	-	FALSE
chr1	36535590	A	G	0.00301		.	FALSE	AluSx1	SINE,Alu
chr1	109475629	A	G	0.00315	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr15	59954723	T	A	0.00043	BNIP2	-	FALSE
chr2	61764920	C	A	0.00662	XPO1	-	FALSE
chr1	155838369	G	C	0.00346	SYT11	+	FALSE
chr8	98736864	T	A	0.00086	MTDH	+	FALSE
chr1	119693495	A	G	0.00996	LOC101929147	+	TRUE	AluSx	SINE,Alu
chr1	16889866	G	A	0.00995	NBPF1	-	FALSE
chr1	144618201	T	C	2.48995E-05	NBPF20,NBPF9	+	FALSE
chr1	53289547	A	G	0.00646	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr2	55459824	C	T	0.00786	RPS27A	+	FALSE
chr19	39926509	A	C	0.00986	RPS16	-	FALSE
chr1	39794147	A	C	9.03176E-05	MACF1	+	FALSE
chr2	3627302	A	T	0.00021	RPS7	+	FALSE
chr12	56510559	A	G	0.00137	RPL41	+	FALSE
chr1	26799971	T	A	0.00713	HMGN2	+	FALSE
chr2	20192696	G	A	0.00400	MATN3,LOC101928222	+,-	FALSE
chr4	39550564	T	C	0.00996	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr8	97506373	C	G	0.00579	SDC2	+	FALSE	(CCCCGAG)n	SINE,Alu
chr1	1251844	T	C	0.00731	CPSF3L	-	TRUE	AluSq2	SINE,Alu
chr1	28661656	A	G	0.00319	MED18	+	TRUE	AluSg	SINE,Alu
chr2	38971640	A	C	0.00050	SRSF7	-	FALSE
chr3	183976477	C	T	0.00215	ECE2	+	FALSE
chr1	153587256	A	T	0.00013	S100A14	-	FALSE
chr1	117532372	G	T	0.00678	PTGFRN	+	FALSE
chr1	109535128	G	A	0.00063	WDR47	-	FALSE
chr1	146650916	C	T	0.00025	PDIA3P1	+	FALSE
chr5	140240514	A	G	0.00151	PCDHA1,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHA10	+	FALSE	AluY	SINE,Alu
chr3	10192798	A	G	0.00014	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	16889513	T	C	0.00777	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr3	5258985	T	C	0.00436	EDEM1	+	FALSE
chr2	98090925	T	C	0.00056	LOC100506076	-	FALSE	L1PREC2	SINE,Alu
chr17	26672364	C	G	0.00645	TNFAIP1	+	FALSE
chr1	204526727	A	G	0.00033	MDM4	+	TRUE	AluSx	SINE,Alu
chr8	11172477	C	T	0.00805	MTMR9	+	FALSE
chr1	157963370	C	G	0.00445	KIRREL	+	FALSE
chr1	162752670	G	A	0.00594		.	FALSE
chr9	111779229	T	C	0.00269	TMEM245	-	FALSE
chr1	241794056	C	A	0.00753	OPN3,CHML	-	FALSE
chr2	55459824	C	T	0.00763	RPS27A	+	FALSE
chr1	203766872	G	A	1.42518E-06	ZC3H11A,ZBED6	+	FALSE
chr17	42876791	T	C	0.00461	GJC1	-	TRUE	AluSz6	SINE,Alu
chr1	47840953	A	G	0.00404	CMPK1	+	FALSE
chr5	34908535	T	C	0.00054	RAD1	-	FALSE	AluSp	SINE,Alu
chr4	2951804	A	G	7.08227E-08	NOP14-AS1,NOP14	+,-	FALSE
chr2	203744241	T	C	0.00511		.	FALSE	AluSx	SINE,Alu
chr1	1595604	A	T	0.00233	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr5	53840199	G	T	0.00857	SNX18	+	FALSE
chr3	12940346	G	A	0.00411	IQSEC1	-	FALSE
chr1	182569318	G	T	0.00101	RGS16	-	FALSE
chr2	37331037	T	C	0.00026		.	FALSE	AluSx1	SINE,Alu
chr1	8938276	T	A	0.00178	ENO1	-	FALSE
chr4	113198883	G	T	0.00905	TIFA	-	FALSE
chr1	67874696	T	C	9.42249E-06	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	25894464	G	A	0.00527	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr14	50053315	G	A	0.00150		.	FALSE	7SLRNA	SINE,Alu
chr5	140594466	G	A	0.00209	PCDHB13	+	FALSE
chr1	1337733	A	C	0.00017	MRPL20	-	FALSE
chr1	11846104	C	T	0.00297	C1orf167,MTHFR	+,-	FALSE	L1ME4a	SINE,Alu
chr5	133918133	A	C	0.00413	JADE2	+	FALSE
chr1	566933	A	G	3.50078E-05		.	FALSE
chr8	56985609	G	T	0.00134	RPS20	-	FALSE
chr1	43272842	A	T	5.86577E-06	SVBP	-	FALSE
chr1	179044100	A	G	0.00897	FAM20B	+	TRUE	AluSx	SINE,Alu
chr17	80899281	G	A	0.00053	TBCD	+	FALSE
chr2	11323079	T	A	0.00586	ROCK2	-	FALSE	(TA)n	SINE,Alu
chr1	10520683	T	C	0.00058	DFFA	-	TRUE	AluSc8	SINE,Alu
chr3	69151152	C	A	0.00750	ARL6IP5	+	FALSE
chr3	15114318	T	C	0.00067	RBSN	-	TRUE	AluY	SINE,Alu
chr6	32796463	A	C	0.00680		.	FALSE	(CCCCA)n	SINE,Alu
chr17	8378694	A	C	0.00735	MYH10	-	FALSE
chr1	109605647	G	A	0.00019		.	FALSE	AluY	SINE,Alu
chr3	182614493	T	C	0.00195	ATP11B	+	FALSE
chr1	16932181	C	T	0.00641	NBPF1	-	FALSE
chr8	11700444	C	G	0.00042	CTSB	-	FALSE	AluSq2	SINE,Alu
chr1	179072966	C	T	0.00107	ABL2	-	FALSE	MIRc	SINE,Alu
chr1	212587320	T	C	0.00023	TMEM206	-	FALSE
chr1	24999468	G	T	0.00075	SRRM1	+	FALSE	(T)n	SINE,Alu
chr1	145512073	A	G	0.00505	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	40537941	A	C	0.00627	CAP1	+	FALSE	(A)n	SINE,Alu
chr21	37789499	A	G	0.00889		.	FALSE	AluJb	SINE,Alu
chr1	46500251	G	A	0.00205	MAST2	+	FALSE
chr2	37430603	T	C	0.00483	CEBPZOS,CEBPZ	+,-	FALSE
chr2	61152521	G	A	0.00134	REL	+	FALSE
chr2	56150864	C	T	0.00615	EFEMP1	-	FALSE
chr17	65335362	T	C	3.02375E-05	PSMD12	-	TRUE	AluSx	SINE,Alu
chr1	28832533	G	A	0.00761	SNHG3,RCC1	+	FALSE
chr1	24134721	T	C	0.00448	HMGCL	-	FALSE
chr10	114209912	A	G	0.00060	VTI1A	+	TRUE	AluSx3	SINE,Alu
chr1	120695049	G	A	0.00129		.	FALSE
chr3	183476685	G	A	0.00032	YEATS2	+	FALSE
chr1	144598755	G	A	0.00044	NBPF20	+	FALSE
chr1	28661831	A	G	9.37902E-09	MED18	+	TRUE	AluSg	SINE,Alu
chr3	195694454	C	T	0.00307	SDHAP1	-	FALSE
chr16	10624926	T	C	0.00029	EMP2	-	TRUE	AluSx3	SINE,Alu
chr21	34731077	A	G	0.00926	IFNAR1	+	TRUE	AluJr	SINE,Alu
chr1	16952481	A	G	0.00093	CROCCP2	-	FALSE
chr1	16889413	T	C	0.00016	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	16889414	T	C	0.00012	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	16890130	A	C	0.00138	NBPF1	-	FALSE
chr1	67874689	T	C	0.00146	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	46830257	C	T	0.00208	NSUN4	+	FALSE	AluSx1	SINE,Alu
chr1	182360930	A	G	0.00506	GLUL	-	FALSE
chr2	1637648	T	C	9.03854E-11	PXDN	-	FALSE
chr3	194361676	C	T	0.00378	LSG1	-	FALSE	MSTA	SINE,Alu
chr1	33145978	A	T	0.00288	SYNC,RBBP4	+,-	FALSE
chr1	16933110	T	C	0.00821	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr3	196046746	T	C	0.00513	TM4SF19-TCTEX1D2,TM4SF19-AS1	+,-	FALSE	AluSc5	SINE,Alu
chr7	7918285	G	A	0.00255	UMAD1	+	FALSE
chr1	19943823	C	A	0.00752	MINOS1,MINOS1-NBL1	+	FALSE
chr7	143003517	T	A	0.00251	CASP2	+	FALSE	AluY	SINE,Alu
chr1	38463504	C	T	0.00068	FHL3	-	FALSE
chr3	195694454	C	T	0.00092	SDHAP1	-	FALSE
chr1	16200163	A	G	0.00112	SPEN	+	FALSE
chr1	3730400	T	C	0.00457	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	204096630	T	C	0.00471	SOX13	+	FALSE
chr1	19545147	T	G	0.00510	LOC101927895,EMC1	+,-	FALSE
chr1	32661578	C	T	0.00623	TXLNA	+	FALSE	(T)n	SINE,Alu
chr17	48771484	C	A	0.00737	ANKRD40	-	FALSE	AluSz	SINE,Alu
chr19	59095573	A	G	0.00169	CENPBD1P1	+	TRUE	AluJb	SINE,Alu
chr1	25687901	T	C	0.00926	TMEM50A	+	FALSE
chr2	129024408	G	A	0.00502	HS6ST1	-	FALSE
chr11	94801636	C	G	0.00522	SRSF8	+	FALSE
chr1	206566904	T	C	0.00322	SRGAP2	+	FALSE
chr15	41590287	A	G	0.00319	OIP5-AS1	+	FALSE
chr3	49396751	T	C	0.00311	RHOA	-	FALSE
chr3	39438321	A	T	6.25124E-06	SLC25A38	+	FALSE
chr1	117117182	C	T	0.00270	IGSF3	-	FALSE
chr1	22400707	C	G	0.00232	CDC42	+	FALSE	AluSc8	SINE,Alu
chr1	118502732	C	T	0.00151	WDR3,SPAG17	+,-	FALSE
chr12	56510697	G	A	0.00989	RPL41	+	FALSE
chr2	208619590	A	G	0.00274	CCNYL1,MIR4775	+	TRUE	EutTc1-N2	SINE,Alu
chr14	100762690	T	C	0.00461	SLC25A29	-	TRUE	AluJo	SINE,Alu
chr1	120612194	C	G	1.19417E-05	NOTCH2	-	FALSE	(CCG)n	SINE,Alu
chr7	300181	G	A	2.39021E-07	FAM20C	+	FALSE
chr1	101444069	C	A	0.00962	SLC30A7	+	FALSE	MIR3	SINE,Alu
chr12	133297966	A	G	0.00000	PGAM5	+	FALSE	AluJo	SINE,Alu
chr1	144821986	C	T	0.00218	NBPF20,NBPF9	+	FALSE
chr1	145694181	A	G	0.00052	NBPF20,NBPF10	+	TRUE	AluSz	SINE,Alu
chr3	45960851	C	T	0.00299	FYCO1	-	FALSE
chr17	5288082	A	G	0.00184	RABEP1	+	TRUE
chr1	55207982	C	A	0.00063	MROH7-TTC4,TTC4	+	FALSE
chr4	17804785	T	C	0.00273	DCAF16	-	TRUE	AluSx	SINE,Alu
chr5	125962344	A	G	0.00101	PHAX	+	TRUE	AluSc	SINE,Alu
chr8	30536015	T	C	6.64592E-05	GSR	-	TRUE	AluJr	SINE,Alu
chr11	67796144	A	T	0.00581	ALDH3B1	+	FALSE	AluSx	SINE,Alu
chr1	36770045	T	C	0.00943	THRAP3	+	FALSE
chr1	109180686	C	T	1.31584E-05	FAM102B	+	FALSE
chr2	178406767	A	T	0.00416	AGPS	+	FALSE
chr2	72403387	C	A	0.00486	EXOC6B	-	FALSE
chr1	10042987	A	G	0.00488	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr5	154194459	C	A	0.00832	LARP1	+	FALSE
chr7	29961884	C	G	0.00024	SCRN1	-	FALSE
chr1	20977380	T	C	0.00695	PINK1,PINK1-AS	+,-	FALSE
chr3	194124421	A	G	0.00024	ATP13A3	-	FALSE
chr1	145369498	A	G	0.00700	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	143399383	T	A	0.00053		.	FALSE	L1MC4	SINE,Alu
chr1	115259768	T	C	0.00156	CSDE1	-	FALSE
chr1	150704633	T	C	1.58455E-05	CTSS	-	TRUE	AluJo	SINE,Alu
chr3	179042866	A	G	0.00806	ZNF639	+	FALSE	AluSp	SINE,Alu
chr11	76835290	C	T	0.00011	CAPN5	+	FALSE
chr3	156259348	G	A	0.00899	SSR3	-	FALSE	AluSq2	SINE,Alu
chr12	56510706	A	G	0.00053	RPL41	+	FALSE
chr12	133334975	T	C	0.00070	ANKLE2	-	TRUE	AluSz	SINE,Alu
chr1	156011444	T	C	0.00483	UBQLN4	-	FALSE
chr2	69548320	C	T	7.68354E-05	GFPT1	-	FALSE
chr1	155868177	G	A	7.38851E-05	RIT1	-	FALSE
chr1	6283264	T	C	0.00561	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	16889866	G	A	0.00051	NBPF1	-	FALSE
chr1	25890189	A	G	0.00961	LDLRAP1	+	FALSE
chr1	17522430	A	G	0.00684		.	FALSE
chr3	156258230	T	C	0.00011	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	144595935	G	A	0.00636	NBPF20	+	FALSE	AluJb	SINE,Alu
chr1	65692499	C	T	0.00516	AK4	+	FALSE	(T)n	SINE,Alu
chr4	7765042	C	T	0.00903	AFAP1,AFAP1-AS1	+,-	FALSE
chr2	201749994	T	C	0.00496	PPIL3	-	TRUE	AluSx	SINE,Alu
chr3	170609385	C	T	0.00212	EIF5A2	-	FALSE
chr1	145209366	A	G	0.00499	NBPF20,NOTCH2NL	+	FALSE
chr1	46075188	C	A	0.00199	NASP	+	FALSE	A-rich	SINE,Alu
chr1	46159823	T	A	0.00823	TMEM69	+	FALSE
chr7	79848337	G	A	0.00037	GNAI1	+	FALSE
chr1	145512074	A	G	0.00014	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	78142856	T	C	0.00086	ZZZ3	-	TRUE	AluSx	SINE,Alu
chr1	33240842	C	T	0.00446	YARS	-	FALSE
chr1	16918502	A	G	0.00098	NBPF1	-	FALSE
chr1	145283718	G	A	0.00897	NBPF20,NOTCH2NL	+	FALSE
chr4	159176109	C	A	0.00042	TMEM144	+	FALSE	MIR	SINE,Alu
chr1	227847344	T	C	0.00205	ZNF678	+	FALSE
chr1	15736752	G	A	0.00170	EFHD2	+	FALSE
chr1	24288529	T	C	0.00401	PNRC2	+	FALSE
chr1	9788153	G	A	0.00198	PIK3CD	+	FALSE	AluSx	SINE,Alu
chr1	145689568	A	G	8.25649E-05	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	201860626	A	G	0.00599	SHISA4	+	FALSE
chr15	90815820	A	G	0.00171		.	FALSE	FRAM	SINE,Alu
chr1	183105534	T	C	0.00125	LAMC1	+	FALSE
chr1	179042719	A	G	5.24590E-05	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr3	48787118	T	C	0.00359	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	2241376	C	T	0.01000	SKI	+	FALSE
chr19	65146	G	A	0.00761	WASH5P	-	FALSE
chr2	86252214	T	C	0.00930	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr5	40831098	T	C	3.69541E-05		.	FALSE	AluSx3	SINE,Alu
chr2	55516940	A	C	0.00389	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr2	171849612	T	C	0.00364	TLK1	-	FALSE
chr1	160175191	A	C	0.00509	LOC729867,PEA15	+,-	FALSE	(GGC)n	SINE,Alu
chr1	24287616	G	A	0.00218	PNRC2	+	FALSE
chr1	32799512	A	T	0.00929	MARCKSL1	-	FALSE
chr1	46774813	C	G	0.00766	UQCRH	+	FALSE
chr1	26608021	T	A	0.00069		.	FALSE
chr4	185309396	G	A	0.00199	IRF2	-	FALSE	(GGGAT)n	SINE,Alu
chr1	204521159	A	G	0.00158	MDM4	+	TRUE	AluSp	SINE,Alu
chr7	16640491	G	A	0.00478	ANKMY2	-	FALSE
chr1	93827990	C	A	0.00517	DR1	+	FALSE
chr3	113528895	A	T	0.00191	ATP6V1A	+	FALSE	AluSp	SINE,Alu
chr1	100489992	A	G	0.00938	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr1	205687354	T	C	0.00012	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr10	75008876	T	C	0.00255	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	205056844	T	A	0.00225	RBBP5	-	FALSE
chr7	44841236	G	A	0.00819	PPIA	+	FALSE
chr1	109535117	C	T	0.00211	WDR47	-	FALSE
chr1	47844403	C	A	0.00511	CMPK1	+	FALSE
chr1	25894468	C	G	0.00357	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	16928622	C	A	0.00197	NBPF1	-	FALSE
chr1	54692358	G	A	0.00195	SSBP3	-	FALSE
chr12	56510708	A	G	0.00050	RPL41	+	FALSE
chr14	31916944	T	C	1.05468E-06	LOC101927124,DTD2	+,-	FALSE	AluSc8	SINE,Alu
chr1	143189486	A	G	0.00122	LOC102723769	-	FALSE
chr1	214557685	C	A	0.00205	PTPN14	-	FALSE

RBP	CPSF6
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR676EKU
Platform	HiSeq
Pubmed ID	32252787

CPSF6 - Target Gene Network