RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr22	36677546	T	G	0.00197	MYH9	-	FALSE
chr1	11982544	T	C	4.37710E-05	KIAA2013	-	FALSE
chr1	156564726	T	C	0.00995	GPATCH4	-	FALSE
chr8	145159706	C	G	0.00561	MAF1	+	FALSE
chr1	87328401	A	T	0.00946	SEP15	-	FALSE
chr1	89479063	G	A	0.00076	GBP3	-	FALSE
chr3	181430141	G	C	0.00086	SOX2-OT,SOX2	+	FALSE
chr1	111721354	G	T	0.00616	CEPT1	+	FALSE
chr16	10623543	T	C	0.00025	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	16889575	T	C	0.00969	NBPF1	-	TRUE
chr1	36068210	T	C	0.00025	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	19542301	T	C	0.00032	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	43917637	G	A	0.00164	SZT2,HYI	+,-	FALSE
chr1	214531239	C	T	6.46771E-05	PTPN14	-	FALSE
chr10	70277096	T	C	0.00229	SLC25A16	-	FALSE	L2c	SINE,Alu
chr1	35644502	A	T	0.00702	SFPQ	-	FALSE	(A)n	SINE,Alu
chr1	6932082	T	A	0.00330	CAMTA1	+	FALSE
chr1	33148623	A	G	0.00221	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr11	18552269	T	A	0.00066		.	FALSE	AluJr	SINE,Alu
chr1	6283306	T	C	0.00609	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	19542455	T	C	0.00048	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	9161142	T	C	8.95302E-05		.	FALSE	AluSx	SINE,Alu
chr19	19792288	A	G	0.00379	ZNF101	+	TRUE	AluJb	SINE,Alu
chr4	434456	C	T	0.00553	ABCA11P,ZNF721	-	FALSE	AluSp	SINE,Alu
chr1	155161702	G	C	0.00020	MUC1	-	FALSE
chr1	28904397	C	G	0.00125	TRNAU1AP	+	FALSE
chr1	44447004	G	A	0.00768	B4GALT2	+	FALSE	(CAG)n	SINE,Alu
chr1	161930908	G	A	0.00083	ATF6	+	FALSE
chr1	53288862	A	G	0.00503	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	36068295	T	C	2.11660E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr8	27661063	T	A	0.00138	ESCO2	+	FALSE	(AC)n	SINE,Alu
chr1	150208462	A	C	9.89925E-05	ANP32E	-	FALSE
chr2	207146631	C	A	9.52905E-05	ZDBF2	+	FALSE
chr12	26809316	G	A	0.00150	ITPR2	-	FALSE
chr1	205738843	C	T	0.00072	RAB29	-	FALSE	AluSz6	SINE,Alu
chr1	32801724	T	G	0.00816	MARCKSL1	-	FALSE
chr1	44818549	C	T	0.00108	ERI3	-	FALSE
chr1	205686523	G	T	2.43057E-05	NUCKS1	-	FALSE
chr1	20976843	G	C	0.00202	PINK1,PINK1-AS	+,-	FALSE
chr4	17629933	A	G	0.00504		.	FALSE	MER90	SINE,Alu
chr1	40539212	C	A	0.00380	PPT1	-	FALSE
chr1	16974666	C	T	0.00131	MST1P2	+	FALSE
chr3	179506482	A	G	0.00017	USP13	+	FALSE	MER33	SINE,Alu
chr3	66430372	T	A	0.00300	LRIG1	-	FALSE
chr1	23636016	T	G	0.00796	HNRNPR	-	FALSE
chr1	91486838	G	C	0.00514	ZNF644	-	FALSE
chr1	16927039	C	T	0.00040	NBPF1	-	FALSE
chr17	57281125	A	G	0.00204	PRR11	+	TRUE	AluSz	SINE,Alu
chr1	16160968	C	T	0.00524	FLJ37453	-	FALSE	(T)n	SINE,Alu
chr10	51026705	C	G	0.00456	PARG	-	FALSE
chr8	30535975	T	C	5.05710E-05	GSR	-	TRUE	AluJr	SINE,Alu
chr3	45722381	A	G	0.00996	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr1	9160989	T	C	0.00183		.	FALSE	AluJb	SINE,Alu
chr17	49042386	T	C	4.28426E-05	SPAG9	-	TRUE	AluJb	SINE,Alu
chr1	93301947	C	T	0.00039	FAM69A,RPL5	+,-	FALSE
chr1	1419823	A	G	0.00816	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr10	61548859	A	C	0.00011	CCDC6	-	FALSE
chr17	49042395	T	C	0.00326	SPAG9	-	TRUE	AluJb	SINE,Alu
chr1	145688664	A	T	0.00087	NBPF20,NBPF10,RNF115	+	FALSE
chr1	6282224	T	C	0.00062	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	144912233	C	T	0.00066	NBPF20,PDE4DIP	+,-	FALSE
chr1	32687472	G	A	0.00877	TMEM234,EIF3I	+,-	FALSE
chr1	11847902	C	A	0.00364	C1orf167,MTHFR	+,-	FALSE
chr15	41597437	T	A	0.00217		.	FALSE	AluSz6	SINE,Alu
chr1	150704633	T	C	1.58455E-05	CTSS	-	TRUE	AluJo	SINE,Alu
chr1	93827764	A	G	0.00098	DR1	+	FALSE
chr1	200375837	T	G	0.00490	ZNF281	-	FALSE	(T)n	SINE,Alu
chr1	9328120	A	G	0.00128	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	24288529	T	C	0.00401	PNRC2	+	FALSE
chr1	9161550	G	A	0.00196		.	FALSE
chr4	156273768	T	C	0.00058	MAP9	-	FALSE
chr2	37330391	T	C	0.00134		.	FALSE	AluSq2	SINE,Alu
chr1	52991638	C	T	0.00125	ZCCHC11	-	FALSE
chr1	229652587	T	C	0.00732	ABCB10	-	FALSE
chr1	45975345	A	G	9.37661E-05	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr2	131104524	G	A	0.00912	IMP4	+	FALSE	L1MA9	SINE,Alu
chr7	129251289	C	T	0.00808		.	FALSE
chr1	15992470	G	A	0.00605		.	FALSE
chr1	24862643	T	G	0.00079	RCAN3	+	FALSE
chr2	217366195	C	A	0.00929		.	FALSE
chr11	31452571	A	G	0.00084	DNAJC24	+	TRUE
chr20	45839076	A	T	0.00178	ZMYND8	-	FALSE	(T)n	SINE,Alu
chr5	65108215	A	G	0.00052	NLN	+	FALSE
chr1	117648269	G	A	0.00988		.	FALSE	AluSz6	SINE,Alu
chr19	12740463	A	G	0.00120	ZNF791	+	TRUE	AluYh3a3	SINE,Alu
chr9	17829	G	A	0.00142	WASH1	-	FALSE
chr8	30643547	T	A	0.00748	PPP2CB	-	FALSE
chr1	28825370	A	G	0.00617	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	16935130	C	T	0.00019	NBPF1	-	FALSE
chrX	24095066	G	T	0.00603	EIF2S3	+	FALSE
chr1	33148196	A	G	0.00756	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	6651457	G	A	0.00614	KLHL21	-	FALSE
chr1	19542310	T	C	0.00510	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	16112795	A	G	1.78234E-05	FBLIM1	+	FALSE
chr9	130268408	T	C	0.00416	FAM129B	-	FALSE	(CTCA)n	SINE,Alu
chr1	184661773	G	T	0.00082	EDEM3	-	FALSE
chr1	24134721	T	C	0.00113	HMGCL	-	FALSE
chr10	101563815	G	A	0.00218	ABCC2	+	FALSE
chr4	165998654	T	C	0.00953	TMEM192	-	TRUE	AluSg	SINE,Alu
chr2	170103351	G	T	0.00139	LRP2	-	FALSE
chr17	49042381	T	C	0.00931	SPAG9	-	TRUE	AluJb	SINE,Alu
chr1	100548780	A	T	0.00791	MFSD14A	+	FALSE
chr2	37478348	T	A	0.00392	PRKD3	-	FALSE
chr19	53914395	A	G	0.00227	ZNF765	+	TRUE	AluSx	SINE,Alu
chr1	109181304	C	A	0.00592	FAM102B	+	FALSE
chr12	51325280	A	G	0.00370	METTL7A	+	TRUE	AluSq2	SINE,Alu
chr1	246931057	A	G	0.00048	SCCPDH	+	FALSE
chr2	172413267	G	C	0.00938	CYBRD1	+	FALSE
chr1	179044242	A	G	0.00335	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	44818525	T	C	0.00235	ERI3	-	FALSE
chr19	42376711	A	G	0.00223		.	FALSE	AluSp	SINE,Alu
chr16	10625437	T	C	0.00028	EMP2	-	TRUE	AluSx	SINE,Alu
chr16	603884	C	G	0.00118	CAPN15	+	FALSE
chr1	3545198	T	C	0.00013	TPRG1L	+	FALSE
chr6	46128910	A	G	0.00782	ENPP5	-	FALSE	(GT)n	SINE,Alu
chr2	54887287	C	T	7.50624E-05	SPTBN1	+	FALSE
chr1	100489992	A	G	0.00297	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr1	3545204	C	G	0.00829	TPRG1L	+	FALSE
chr3	52288956	A	T	0.00042	WDR82	-	FALSE
chr2	99812464	A	G	0.00998	MRPL30	+	TRUE	AluSx	SINE,Alu
chr1	10520258	T	C	0.00396		.	FALSE	AluSx	SINE,Alu
chr6	150047376	T	C	0.00102	NUP43	-	TRUE	AluSc	SINE,Alu
chr4	128757345	A	G	0.00040		.	FALSE	AluY	SINE,Alu
chr1	31905886	C	A	0.00226	SERINC2	+	FALSE
chr7	6064007	T	A	0.00551	EIF2AK1	-	FALSE
chr3	45722396	A	G	0.00337	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr1	10518591	A	T	0.00545		.	FALSE
chr2	47387307	G	T	0.00035	CALM2	-	FALSE
chr19	13884096	A	G	0.00049	MRI1	+	TRUE	AluSz	SINE,Alu
chr1	19586532	A	G	7.13982E-05	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	36067677	T	C	0.00655	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	9643873	A	G	0.00064		.	FALSE	AluY	SINE,Alu
chr5	179665201	C	T	0.00037	MAPK9	-	FALSE	AluSx4	SINE,Alu
chr1	9353122	C	G	0.00562	SPSB1	+	FALSE	(GCG)n	SINE,Alu
chr1	146649884	T	A	0.00612	PDIA3P1	+	FALSE
chr1	233086456	T	C	0.00344	NTPCR	+	FALSE
chr1	16894497	C	T	0.00454	NBPF1	-	FALSE
chr8	41401571	T	A	0.00240	LOC102723729,GINS4	+,-	FALSE
chr1	9416568	C	T	0.00061	SPSB1	+	FALSE
chr1	9328213	A	G	5.00055E-05	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	9328243	A	G	0.00616	H6PD	+	TRUE	AluJr	SINE,Alu
chr7	94060360	T	G	0.00014	COL1A2	+	FALSE
chr12	25357680	T	C	0.00861	ETFRF1	+	FALSE
chr1	33148691	A	G	0.00032	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr7	107789927	T	C	0.00111	NRCAM	-	FALSE
chr1	40219280	T	C	8.82951E-05	PPIE	+	FALSE
chr7	94060361	C	T	2.02320E-06	COL1A2	+	FALSE
chr2	37331525	T	C	0.00140		.	FALSE	AluJb	SINE,Alu
chr1	19246181	A	G	1.12993E-05	IFFO2	-	FALSE
chr4	84525974	T	C	0.00255	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr7	29963082	G	A	0.00118	SCRN1	-	FALSE
chr1	236714384	G	A	2.81217E-05	LGALS8,HEATR1	+,-	FALSE
chr1	109474776	A	G	0.00088	GPSM2,CLCC1	+,-	FALSE	AluSz	SINE,Alu
chr12	1602602	A	G	8.31525E-05	ERC1	+	FALSE	AluSx	SINE,Alu
chr1	14150032	C	T	0.00163	PRDM2	+	FALSE
chr1	1255400	T	C	0.00224	CPSF3L	-	FALSE
chr1	16910172	G	A	0.00085	NBPF1	-	FALSE
chr2	86731654	G	A	0.00931	CHMP3,RNF103-CHMP3	-	FALSE	AluJr	SINE,Alu
chr1	10520296	T	C	0.00299		.	FALSE	AluSx	SINE,Alu
chr1	28824041	T	A	0.00872	PHACTR4	+	FALSE	AluSx	SINE,Alu
chr1	179044206	A	G	0.00015	FAM20B	+	TRUE	AluSx	SINE,Alu
chr16	71681515	A	G	0.00308	PHLPP2	-	FALSE
chr19	65146	G	A	0.00761	WASH5P	-	FALSE
chr1	110566210	T	A	0.00832	AHCYL1	+	FALSE
chr1	17298138	A	T	0.00465	CROCC	+	FALSE
chr1	92862457	A	G	0.00974		.	FALSE	AluSp	SINE,Alu
chr17	57281069	A	G	0.00278	PRR11	+	TRUE	AluSz	SINE,Alu
chr1	154554947	T	G	0.00511	ADAR	-	FALSE
chr1	19543465	T	C	0.00427	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr3	169808354	G	A	0.00015	PHC3	-	FALSE
chr19	17412218	C	T	0.00790	ABHD8	-	FALSE
chr1	19542310	T	C	0.00582	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr2	206987636	T	C	0.00093		.	FALSE	AluJb	SINE,Alu
chr1	33148362	A	T	0.00870	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	179044181	A	G	0.00660	FAM20B	+	TRUE	AluSx	SINE,Alu
chr3	42266349	C	T	0.00942	TRAK1	+	FALSE
chr1	53291408	A	G	0.00931	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr4	17629937	G	A	0.00795		.	FALSE	MER90	SINE,Alu
chr3	172224303	A	G	0.00524	TNFSF10	-	FALSE
chr5	134062608	G	T	0.00171	SEC24A	+	FALSE
chr1	16893721	A	C	0.00179	NBPF1	-	FALSE
chr17	57279258	A	G	0.00095	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	10364612	A	C	0.00860	KIF1B	+	FALSE
chr2	74333231	C	T	0.00073	TET3	+	FALSE
chr8	30536151	T	C	5.90006E-09	GSR	-	TRUE	AluJr	SINE,Alu
chr3	119212012	A	C	0.00976	POGLUT1	+	FALSE
chr1	31732602	C	A	0.00336	SNRNP40	-	FALSE
chr1	33148721	A	G	0.00359	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	240255560	G	A	0.00810	FMN2	+	FALSE	(GGC)n	SINE,Alu
chr1	36068369	T	C	0.00404	PSMB2	-	TRUE	AluSc	SINE,Alu
chr12	124146095	A	G	0.00431	GTF2H3	+	TRUE	AluSx4	SINE,Alu
chr14	53242652	T	C	0.00081	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr3	15114317	T	C	0.00113	RBSN	-	TRUE	AluY	SINE,Alu
chrX	2824343	T	C	0.00108	ARSD	-	TRUE	AluJb	SINE,Alu
chr2	10270757	A	T	0.00382	RRM2	+	FALSE
chr3	12877522	A	T	0.00956	RPL32	-	FALSE
chr2	179368982	A	C	0.00530	MIR548N,PLEKHA3	+	FALSE
chr4	103715820	A	C	0.00652	LOC102723704,UBE2D3	+,-	FALSE	(A)n	SINE,Alu
chr1	36068275	T	C	0.00098	PSMB2	-	TRUE	AluSc	SINE,Alu
chr3	195701389	C	A	0.00227	SDHAP1	-	FALSE
chr1	39794147	A	C	9.03176E-05	MACF1	+	FALSE
chr9	17835	A	G	0.00012	WASH1	-	FALSE
chr10	61548857	C	A	0.00046	CCDC6	-	FALSE
chr2	203741654	T	C	0.00611		.	FALSE	AluJr	SINE,Alu
chr1	89649369	T	C	0.00333	GBP4	-	TRUE	AluJb	SINE,Alu
chr1	3546137	A	C	0.00778	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr1	47905553	G	A	0.00098	FOXD2	+	FALSE
chr1	46075192	A	C	0.00045	NASP	+	FALSE	A-rich	SINE,Alu
chr1	78414308	T	C	0.00024	FUBP1	-	FALSE
chr1	145511962	A	G	0.00187	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr5	149364144	A	G	0.00014	SLC26A2	+	TRUE	AluSc8	SINE,Alu
chr3	71005566	C	T	0.00209	FOXP1	-	FALSE	(T)n	SINE,Alu
chr1	10520603	T	G	0.00838	DFFA	-	FALSE	AluSc8	SINE,Alu
chr4	4291832	A	T	6.49020E-08	LYAR	-	FALSE
chr1	6283348	T	C	0.00082	ICMT	-	TRUE	AluSx3	SINE,Alu
chrX	16781687	A	G	0.00298		.	FALSE	AluSx1	SINE,Alu
chr19	3467751	C	A	0.00182	NFIC	+	FALSE	(TA)n	SINE,Alu
chr2	3597974	T	C	1.93309E-05	RNASEH1	-	FALSE
chr4	2940165	T	C	0.00201	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	36067851	T	C	0.00269	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	33150643	G	A	0.00606	SYNC,RBBP4	+,-	FALSE	AluJo	SINE,Alu
chr22	50745987	C	G	0.00683	PLXNB2	-	FALSE
chr16	81064560	A	G	0.00014	CENPN	+	TRUE	AluSg	SINE,Alu
chr1	57002773	A	G	0.00162	PLPP3	-	FALSE
chrX	77083846	T	C	0.00668	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	3545198	T	C	3.01160E-05	TPRG1L	+	FALSE
chr6	74133913	T	C	0.00439		.	FALSE	AluY	SINE,Alu
chr2	189877305	T	C	0.00612	COL3A1	+	FALSE
chr1	6282420	T	C	0.00133	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	179829595	T	C	0.00115	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr1	204521625	A	G	0.00808	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	109780743	C	A	0.00643	SARS	+	FALSE

RBP	KHDRBS1
Knock-Method	shRNA
RBP Family	KH_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR023HWI
Platform	HiSeq
Pubmed ID	32252787

KHDRBS1 - Target Gene Network