RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr11	65544342	T	C	3.74920E-05	AP5B1	-	TRUE	AluJb	SINE,Alu
chr2	26617209	A	G	5.06124E-05	EPT1	+	FALSE	AluSz	SINE,Alu
chr17	61897188	G	T	0.00465	FTSJ3	-	FALSE
chr2	238499528	T	G	0.00332	RAB17	-	FALSE
chr1	9643195	A	G	0.00294		.	FALSE	AluSx	SINE,Alu
chr4	52753346	A	G	0.00782	DCUN1D4	+	TRUE	AluSc	SINE,Alu
chr10	63852210	C	T	0.00324	ARID5B	+	FALSE
chr12	69160574	A	G	0.00891		.	FALSE	AluJb	SINE,Alu
chr2	198572076	A	C	0.00532	MARS2	+	FALSE
chr6	42849746	A	G	0.00042	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	19953124	G	A	0.00137	MINOS1,MINOS1-NBL1	+	FALSE
chr4	189026673	A	G	0.00994	TRIML2	-	FALSE
chr6	114178851	T	C	0.00056	MARCKS	+	FALSE	(TGCCGC)n	SINE,Alu
chr4	39289308	G	C	0.00509	RFC1	-	FALSE
chr1	16889820	C	T	0.00012	NBPF1	-	FALSE
chr7	99006740	G	A	0.00269	BUD31	+	FALSE
chr1	16912029	C	G	0.00699	NBPF1	-	FALSE
chr1	16958064	A	G	0.00446		.	FALSE
chr14	53109810	T	C	0.00463	ERO1A	-	TRUE	MER53	SINE,Alu
chr1	19984346	A	G	0.00071	MINOS1-NBL1,NBL1	+	FALSE
chr1	3730400	T	C	0.00018	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	53289860	A	G	0.00346	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	226333558	A	C	0.00052	ACBD3	-	FALSE	(CAAAA)n	SINE,Alu
chr4	6689813	C	A	0.00141		.	FALSE	L2b	SINE,Alu
chr10	71909957	G	T	0.00853		.	FALSE
chr3	19992312	A	G	0.00798	RAB5A	+	FALSE
chr1	36067784	T	C	0.00083	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	16893686	G	C	0.00823	NBPF1	-	FALSE
chr16	427820	C	T	0.00240	TMEM8A	-	FALSE
chr15	41590932	A	G	0.00055	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr1	6283264	T	C	0.00127	ICMT	-	TRUE	AluSx3	SINE,Alu
chr5	64964627	T	C	2.01273E-05	SGTB	-	TRUE	AluSx1	SINE,Alu
chr5	178986978	C	G	0.00341	RUFY1	+	FALSE
chr1	6651728	C	T	0.00118	KLHL21	-	FALSE
chr15	83659319	A	T	0.00130	FAM103A1,C15orf40	+,-	FALSE
chr1	10519787	A	T	0.00037		.	FALSE	(A)n	SINE,Alu
chr14	75202532	A	G	1.20675E-07	FCF1	+	TRUE	AluSc	SINE,Alu
chr5	118174735	T	C	0.00046	DTWD2	-	TRUE	AluY	SINE,Alu
chr1	161930908	G	A	0.00664	ATF6	+	FALSE
chr1	27879798	A	G	0.00899	AHDC1	-	FALSE	MIRb	SINE,Alu
chr1	16921146	T	C	0.00353	NBPF1	-	FALSE
chr1	67874697	T	C	0.00642	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr4	56237899	A	G	0.00503	SRD5A3,SRD5A3-AS1	+,-	FALSE	AluSx	SINE,Alu
chr1	1607574	C	T	0.00187	CDK11B,SLC35E2B	-	FALSE
chr1	9910358	T	C	0.00083	CTNNBIP1	-	FALSE
chr1	9163110	T	C	4.21626E-05		.	FALSE	FRAM	SINE,Alu
chr19	46053370	T	C	0.00045	OPA3	-	TRUE	AluSx1	SINE,Alu
chr2	202032184	A	G	0.00954	CFLAR	+	FALSE	AluJo	SINE,Alu
chr5	177576461	A	T	0.00659		.	FALSE
chr4	4291825	C	T	1.35815E-09	LYAR	-	FALSE
chr1	15755550	A	C	0.00969	EFHD2	+	FALSE
chr1	10521254	T	C	0.00023	DFFA	-	TRUE	AluY	SINE,Alu
chr1	36067677	T	C	5.01583E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	32567573	G	A	0.00701	DYNC1LI1	-	FALSE	(AT)n	SINE,Alu
chr13	50487353	T	C	0.00538	SPRYD7	-	TRUE	AluSg	SINE,Alu
chr5	79923424	T	C	0.00054	DHFR	-	TRUE	AluJr	SINE,Alu
chr16	4810507	G	A	0.00021	ZNF500	-	FALSE
chr7	44918732	T	C	0.00039	PURB	-	FALSE	AluSg	SINE,Alu
chr3	14526625	T	G	0.00414	SLC6A6	+	FALSE
chr3	10143199	A	G	0.00496	FANCD2,FANCD2OS	+,-	FALSE	AluSc8	SINE,Alu
chr6	31595882	C	A	0.00450		.	FALSE
chr1	46075189	C	A	0.00597	NASP	+	FALSE	A-rich	SINE,Alu
chr3	127790249	A	G	0.00276	RUVBL1,SEC61A1	+,-	FALSE
chr1	109181308	T	A	0.00756	FAM102B	+	FALSE
chr13	46700519	C	A	0.00089	LCP1	-	FALSE
chr1	6475348	C	A	4.73725E-05	HES2	-	FALSE	Tigger1	SINE,Alu
chr1	86046472	G	T	0.00409	CYR61	+	FALSE
chr1	19543364	T	C	0.00447	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	115249843	G	A	0.00218	NRAS	-	FALSE
chr15	52203664	A	C	0.01000	TMOD3	+	FALSE
chr1	179829096	T	C	4.38746E-06	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr1	201488771	A	G	0.00062		.	FALSE	AluSq2	SINE,Alu
chr14	31916927	T	C	1.57126E-05	LOC101927124,DTD2	+,-	FALSE	AluSc8	SINE,Alu
chr1	32661594	C	T	0.00528	TXLNA	+	FALSE	(T)n	SINE,Alu
chr1	201438098	T	G	2.75480E-05	PHLDA3	-	FALSE
chr10	101992298	T	C	0.00409	CWF19L1	-	TRUE	AluSq2	SINE,Alu
chrX	133930368	T	G	0.00126	FAM122B	-	FALSE	G-rich	SINE,Alu
chr21	18940466	A	T	0.00169	CXADR	+	FALSE	AluY	SINE,Alu
chr1	145283718	G	A	0.00989	NBPF20,NOTCH2NL	+	FALSE
chr1	67874697	T	C	0.00119	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr2	39050141	A	C	0.00924	DHX57	-	FALSE
chr3	40578941	A	G	0.00293	ZNF621	+	TRUE	AluJr	SINE,Alu
chr4	56291751	A	C	0.00291	TMEM165	+	FALSE
chr4	155457051	A	T	0.00378	PLRG1	-	FALSE	L2d2	SINE,Alu
chr3	197682718	T	C	0.00163	IQCG,RPL35A	+,-	FALSE
chr9	119162301	A	T	0.00778	PAPPA,PAPPA-AS1	+,-	FALSE	(GAAA)n	SINE,Alu
chr3	46623292	T	C	0.00408	TDGF1	+	FALSE	AluSx3	SINE,Alu
chr1	6162583	G	A	0.00281	CHD5	-	FALSE
chr8	25272364	C	G	0.00693	DOCK5	+	FALSE
chr5	179048449	T	G	0.00394	HNRNPH1	-	FALSE
chr4	2841893	A	G	0.00974	SH3BP2	+	TRUE	AluJb	SINE,Alu
chr5	150827307	G	T	0.00708	SLC36A1	+	FALSE
chr7	129592510	G	T	0.00165	UBE2H	-	FALSE
chr6	34231301	G	C	0.00772		.	FALSE
chr6	36894337	G	A	0.00607	C6orf89	+	FALSE	GA-rich	SINE,Alu
chr16	57505637	T	A	0.00643	POLR2C	+	FALSE
chr3	58304244	G	A	0.00560	RPP14	+	FALSE	AluSz	SINE,Alu
chr17	57279167	A	G	6.96573E-05	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	117648269	G	A	0.00988		.	FALSE	AluSz6	SINE,Alu
chr5	61683960	A	G	0.00491		.	FALSE
chr2	85546474	T	C	0.00051	TGOLN2	-	TRUE	AluSc	SINE,Alu
chr10	13320236	C	T	0.00011	PHYH	-	FALSE
chr1	20975992	T	C	2.78350E-06	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	47099235	A	C	0.00919		.	FALSE
chr1	145693061	A	G	0.00158	NBPF20,NBPF10	+	TRUE	AluSz6	SINE,Alu
chr5	149829071	T	C	0.00407	RPS14	-	FALSE
chr17	30327115	C	T	0.00522	SUZ12	+	FALSE
chr1	146740502	C	G	0.00692	CHD1L	+	FALSE
chr4	248840	A	G	0.00655	ZNF876P	+	TRUE	AluYk3	SINE,Alu
chr1	225707043	T	C	2.18813E-07	ENAH	-	FALSE
chr12	124146073	A	G	0.00085	GTF2H3	+	FALSE	AluSx4	SINE,Alu
chr4	170678993	T	C	3.15742E-05	HPF1	-	FALSE
chr12	53435627	A	G	0.00133	EIF4B	+	FALSE
chr3	9821914	C	T	7.78954E-06	TADA3	-	FALSE
chr1	224380757	A	G	0.00618	DEGS1	+	FALSE	AluSx	SINE,Alu
chr22	36677551	T	C	7.06365E-05	MYH9	-	FALSE
chr2	38971637	G	A	2.13337E-05	SRSF7	-	FALSE
chr1	32373563	G	A	0.00089	PTP4A2	-	FALSE
chr4	84525974	T	C	0.00255	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr14	75202512	A	G	0.00053	FCF1	+	TRUE	AluSc	SINE,Alu
chr3	196670087	G	A	4.07177E-06	NCBP2-AS2	+	FALSE
chr1	92976590	G	A	0.00629	EVI5	-	FALSE
chr6	150047376	T	C	0.00102	NUP43	-	TRUE	AluSc	SINE,Alu
chr6	32148031	A	G	1.10299E-06		.	FALSE
chr6	71299074	A	G	0.00824		.	FALSE	AluSx1	SINE,Alu
chr1	36522615	A	G	0.00658		.	FALSE	AluSc	SINE,Alu
chr2	110842200	C	A	0.00131	MALL	-	FALSE
chr1	36024788	C	T	2.88658E-15	NCDN	+	FALSE
chr1	178444613	T	G	0.00630	RASAL2	+	FALSE
chr1	44443175	A	C	0.00026	ATP6V0B	+	FALSE
chr14	63841402	A	C	0.00692	PPP2R5E	-	FALSE
chr1	67874697	T	C	4.44446E-05	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr9	86553587	G	A	0.00556	C9orf64	-	FALSE
chr1	59148136	T	C	0.00244	MYSM1	-	FALSE
chr1	41972198	A	T	0.00276	HIVEP3	-	FALSE
chr11	18552273	C	T	0.00243		.	FALSE
chr5	178986987	C	T	0.00651	RUFY1	+	FALSE
chr1	227071525	C	T	0.00085	PSEN2	+	FALSE
chr3	10192784	A	G	1.73909E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr17	78921108	G	A	0.00065	RPTOR	+	FALSE
chr11	118471800	T	A	0.00875	ARCN1	+	FALSE	AluSx3	SINE,Alu
chr2	143638992	T	A	0.00089	KYNU	+	FALSE
chr3	52084040	C	T	4.81509E-06	DUSP7	-	FALSE
chr1	1345051	A	G	0.00362		.	FALSE	AluSg	SINE,Alu
chr1	145369706	T	C	0.00186	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chrX	77083617	T	C	3.46806E-05	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr10	13320126	T	A	0.00830	PHYH	-	FALSE
chr2	217366919	A	G	0.00480		.	FALSE	AluSz6	SINE,Alu
chr6	31321806	C	T	6.66134E-15		.	FALSE
chr12	125269475	T	C	0.00184	SCARB1	-	FALSE
chr5	139876355	G	A	0.00815	ANKHD1,ANKHD1-EIF4EBP3	+	FALSE	GA-rich	SINE,Alu
chr12	123640853	C	G	0.00667		.	FALSE
chr1	65299558	C	T	0.00161	JAK1	-	FALSE
chr14	65400786	T	G	0.00077	CHURC1-FNTB,CHURC1	+	FALSE	AluSx	SINE,Alu
chr3	4403260	C	T	0.00603	SUMF1	-	FALSE
chr5	93018884	A	C	0.00538	FAM172A	-	FALSE	(TCA)n	SINE,Alu
chr8	22995145	T	C	3.53807E-06	TNFRSF10D	-	FALSE
chr1	6683561	C	G	0.00732	PHF13	+	FALSE
chr3	195393406	C	T	0.00690	SDHAP2	+	FALSE
chr3	178978532	T	C	0.00061	KCNMB3	-	FALSE
chr5	115165731	T	C	5.24208E-07	ATG12	-	TRUE	AluSq2	SINE,Alu
chr6	158613390	T	C	0.00416	GTF2H5	+	FALSE
chr1	117645998	A	G	0.00057		.	FALSE
chr9	115446725	T	C	0.00917	INIP	-	TRUE	AluJr	SINE,Alu
chr1	41088377	C	T	8.47840E-10	RIMS3	-	FALSE
chr1	85742155	G	A	0.00813	BCL10,LOC646626	+,-	FALSE
chr8	48890247	A	G	2.58682E-14	MCM4	+	TRUE	AluJb	SINE,Alu
chr3	160286646	C	T	0.00086		.	FALSE
chr10	89005496	T	G	0.00138	NUTM2A-AS1	-	FALSE	MSTB1	SINE,Alu
chr4	79832870	A	T	0.00655	BMP2K	+	FALSE
chr1	6314743	C	T	6.72719E-05	GPR153	-	FALSE
chr1	149943157	G	A	0.00060	OTUD7B	-	FALSE
chr4	177252326	A	G	0.00098	SPCS3	+	TRUE
chr5	149829076	G	C	0.00288	RPS14	-	FALSE
chr5	175816759	T	A	0.00018		.	FALSE
chr10	124913908	C	A	0.00784	BUB3	+	FALSE
chr2	178406767	A	T	0.00416	AGPS	+	FALSE
chr1	33149399	A	G	0.00148	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	212911836	T	C	0.00675	NSL1	-	FALSE
chr1	145695329	A	G	0.00400	NBPF20,NBPF10	+	FALSE	AluSz	SINE,Alu
chr9	115447535	T	C	3.15593E-07	INIP	-	TRUE	AluJb	SINE,Alu
chr2	37330620	T	C	0.00216		.	FALSE	AluSq2	SINE,Alu
chr3	99463810	G	T	0.00599	MIR548G,COL8A1	+,-	FALSE
chr2	232028396	A	G	0.00701	PSMD1	+	FALSE
chr1	161932324	A	G	0.00104	ATF6	+	FALSE
chr6	42855972	A	G	3.93003E-05	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	10519936	T	C	0.00029		.	FALSE	AluJr	SINE,Alu
chr1	93617546	T	C	0.00026	TMED5	-	FALSE
chr1	63009329	T	G	0.00155	DOCK7	-	FALSE
chr3	40503729	A	G	5.91625E-05	RPL14	+	FALSE
chr1	205577901	G	A	0.00904	ELK4	-	FALSE
chr1	27861184	G	T	0.00425	AHDC1	-	FALSE	(TCTTTT)n	SINE,Alu
chr1	45975345	A	G	0.00227	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr19	57802824	G	A	0.00924	ZNF460	+	FALSE
chrX	123046290	A	G	0.00524	XIAP	+	TRUE	AluJb	SINE,Alu
chr2	91806132	T	A	0.00460		.	FALSE	MLT1H1	SINE,Alu
chr1	148003734	T	C	0.00015	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr1	120164994	C	T	0.00829	ZNF697	-	FALSE
chr1	91990445	A	G	0.00784	CDC7	+	FALSE	LFSINE_Vert	SINE,Alu
chr19	39433142	T	A	0.00215	FBXO17	-	FALSE	AluJb	SINE,Alu
chr19	51172526	G	C	0.00276	SHANK1	-	FALSE
chr4	25749192	C	T	0.00642	SEL1L3	-	FALSE
chr3	15112630	C	T	0.00017	RBSN	-	FALSE	AluSq2	SINE,Alu

RBP	EXOSC9
Knock-Method	shRNA
RBP Family	RNase_PH
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR812EIA
Platform	HiSeq
Pubmed ID	32252787

EXOSC9 - Target Gene Network