RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	26755209	A	G	0.00745	LIN28A	+	FALSE	AluSx1	SINE,Alu
chr2	203741602	T	C	0.00581		.	FALSE	AluJr	SINE,Alu
chr6	3022725	T	C	0.00081	HTATSF1P2	-	TRUE	AluSz	SINE,Alu
chr3	160219095	G	A	0.00620	KPNA4	-	FALSE	A-rich	SINE,Alu
chr3	101546847	G	A	0.00665	NXPE3,NFKBIZ	+	FALSE
chr5	17276055	T	C	0.00784	BASP1	+	FALSE	(TC)n	SINE,Alu
chr3	44485914	T	C	0.00920	ZNF445	-	FALSE	MIRb	SINE,Alu
chr1	110276861	T	C	0.00180	GSTM3	-	FALSE	LTR77	SINE,Alu
chr1	26801762	G	T	0.00762	HMGN2	+	FALSE
chr1	22109370	G	A	0.00371	USP48	-	FALSE
chr18	61565062	C	G	0.00207	SERPINB2	+	FALSE
chr5	130537666	A	G	0.00329	LYRM7	+	TRUE	AluJb	SINE,Alu
chr1	100657328	A	G	0.00682	DBT	-	FALSE	(AC)n	SINE,Alu
chr3	17201882	C	T	0.00282	TBC1D5	-	FALSE
chr1	144821986	C	T	0.00218	NBPF20,NBPF9	+	FALSE
chr1	121134245	C	T	0.00174	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	(TTTCCT)n	SINE,Alu
chr1	220232143	T	C	7.81076E-05	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	19586458	A	G	7.27253E-05	MRTO4	+	TRUE	AluSz	SINE,Alu
chr2	3609064	G	A	0.00614	RNASEH1-AS1	+	FALSE	MER33	SINE,Alu
chr1	79356400	C	T	0.00714	ADGRL4	-	FALSE
chr1	32661615	A	T	0.00033	TXLNA	+	FALSE
chr1	27731933	C	A	1.77427E-09	WASF2	-	FALSE
chr19	50412217	C	G	0.00017	IL4I1,NUP62	-	FALSE	(GGT)n	SINE,Alu
chr8	23290112	T	C	0.00121	ENTPD4	-	TRUE	AluY	SINE,Alu
chr14	23441380	T	C	0.00102	AJUBA	-	TRUE	Eutr2	SINE,Alu
chr10	104661031	A	G	0.00265	BORCS7-ASMT,AS3MT	+	TRUE	AluY	SINE,Alu
chr5	118175182	T	C	0.00205	DTWD2	-	TRUE	AluJr	SINE,Alu
chr1	244871041	T	A	0.00590	DESI2	+	FALSE
chr3	22424406	A	T	0.00760		.	FALSE
chr1	145284134	G	C	0.00203	NBPF20,NOTCH2NL	+	FALSE	(TG)n	SINE,Alu
chr10	75008845	T	C	4.48613E-05	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr5	87566382	T	A	0.00997	TMEM161B-AS1	+	FALSE
chr8	25272364	C	G	0.00693	DOCK5	+	FALSE
chr4	1228741	G	A	0.00095	CTBP1	-	FALSE
chr2	74645427	A	G	0.00011	C2orf81	-	FALSE
chr1	115249239	G	A	0.00034	NRAS	-	FALSE
chr1	204521724	A	G	0.00851	MDM4	+	TRUE	AluSg	SINE,Alu
chr4	165998039	T	C	0.00199	TMEM192	-	TRUE	AluSx	SINE,Alu
chr1	180943529	C	T	0.00297	STX6	-	FALSE
chr11	63394016	T	C	0.00106	ATL3	-	FALSE
chr1	16890331	C	G	0.00226	NBPF1	-	FALSE
chr1	1647893	C	T	0.00509	CDK11B,CDK11A	-	FALSE
chr4	7764148	G	A	2.22190E-11	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	16890598	T	A	0.00428	NBPF1	-	FALSE
chr1	58999651	T	G	0.00484	OMA1	-	FALSE
chr3	33909611	C	T	0.00598	PDCD6IP	+	FALSE
chr1	43748051	A	G	0.00489	C1orf210	-	FALSE	L2c	SINE,Alu
chr10	75008815	T	C	5.77576E-09	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	26604691	G	C	0.00043	CEP85	+	FALSE
chr7	6505901	T	C	1.53488E-09	KDELR2	-	FALSE
chr20	25428587	A	G	0.00137	GINS1	+	TRUE	AluJb	SINE,Alu
chr5	64964627	T	C	2.01273E-05	SGTB	-	TRUE	AluSx1	SINE,Alu
chrX	77083617	T	C	3.46806E-05	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr5	76728039	T	G	0.00092	WDR41	-	FALSE
chr1	36770607	T	C	0.00171	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	16889466	A	C	0.00665	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr2	37329352	T	C	0.00403		.	FALSE	AluJr4	SINE,Alu
chr1	16921146	T	C	0.00353	NBPF1	-	FALSE
chr1	19543352	T	C	0.00087	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	55316322	A	G	0.00929	DHCR24	-	FALSE
chr12	133298423	A	G	2.89213E-13	PGAM5	+	TRUE	AluSp	SINE,Alu
chr9	14764	C	T	0.00491	WASH1	-	FALSE
chr2	97534237	C	T	0.00644	SEMA4C	-	FALSE
chr1	40537940	A	C	0.00015	CAP1	+	FALSE	(A)n	SINE,Alu
chr5	118174745	T	C	0.00084	DTWD2	-	TRUE	AluY	SINE,Alu
chr3	20025679	A	G	0.00292	RAB5A,PP2D1	+,-	FALSE
chr9	128729384	G	C	0.00059	PBX3	+	FALSE
chr6	44417142	A	G	0.00020	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr6	27327349	C	G	0.00359	ZNF204P	-	FALSE
chr2	201774341	T	C	0.00010		.	FALSE	AluSz	SINE,Alu
chr1	9416151	G	A	0.00292	SPSB1	+	FALSE
chr3	196771049	T	C	0.00010	DLG1	-	FALSE
chr1	38423199	A	T	0.00192	SF3A3	-	FALSE	AluJo	SINE,Alu
chr3	195964298	A	G	0.00263		.	FALSE
chr1	204520250	A	G	0.00706	MDM4	+	TRUE	AluJb	SINE,Alu
chr5	41917696	T	A	0.00045	C5orf51	+	FALSE
chr1	28661692	A	G	2.56757E-06	MED18	+	TRUE	AluSg	SINE,Alu
chr6	17951005	G	C	0.00381	KIF13A	-	FALSE
chr1	225974581	A	G	0.00732	SRP9	+	TRUE	AluJr	SINE,Alu
chr1	6583592	T	C	0.00012	NOL9	-	TRUE	AluSq	SINE,Alu
chr1	16932429	C	G	0.00221	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr21	46935076	T	G	0.00164	SLC19A1	-	FALSE
chr1	67874540	T	C	0.00555	SERBP1	-	FALSE
chr1	42644770	C	T	1.21495E-06	FOXJ3	-	FALSE
chr2	272203	C	T	0.00064	ACP1	+	FALSE
chr7	152342445	T	C	0.00059		.	FALSE	AluJo	SINE,Alu
chr11	68523055	T	C	0.00524	CPT1A	-	TRUE	AluY	SINE,Alu
chr16	81064533	A	G	0.00686	CENPN	+	TRUE	AluSg	SINE,Alu
chr1	79115905	T	C	0.00113	IFI44	+	FALSE
chr1	120839683	G	A	0.00875	FAM72B	+	FALSE
chr2	46414708	G	A	0.00173	PRKCE	+	FALSE
chr8	144940798	T	C	0.00255	EPPK1	-	FALSE
chr1	36067752	T	C	0.00402	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	145512166	T	A	0.00823	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr2	10586904	C	T	0.00041	ODC1,SNORA80B	-	FALSE
chr1	26774224	A	G	0.00349	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr1	40306898	T	C	0.00384	TRIT1	-	FALSE
chr4	2516790	G	T	0.00141	RNF4	+	FALSE
chr5	49692633	T	G	0.00808	EMB	-	FALSE
chr1	10368093	C	A	0.00131	KIF1B	+	FALSE
chr1	145689568	A	G	0.00157	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr10	22825288	G	A	0.00051	PIP4K2A	-	FALSE
chr4	169299528	T	C	0.00745	DDX60L	-	FALSE
chr1	95123291	G	C	0.00040	LINC01057	-	FALSE	LTR7Y	SINE,Alu
chr3	88104073	G	C	0.00887	CGGBP1	-	FALSE
chr19	9672436	T	C	3.01645E-08		.	FALSE	AluJr	SINE,Alu
chr1	47905554	C	G	0.00297	FOXD2	+	FALSE
chr1	204524357	A	G	0.00568	MDM4	+	TRUE	AluY	SINE,Alu
chr9	131093336	T	C	0.00397	COQ4	+	FALSE	AluY	SINE,Alu
chr1	220154768	C	T	0.00067	RNU5F-1,EPRS	+,-	FALSE
chr2	36776056	T	A	0.00030	CRIM1	+	FALSE
chr1	1534826	C	T	0.00382	FNDC10	-	FALSE
chr1	46829013	A	G	0.00360	NSUN4	+	FALSE
chr20	25428588	A	G	0.00068	GINS1	+	TRUE	AluJb	SINE,Alu
chr1	53680090	G	A	0.00321	C1orf123	-	FALSE
chr3	44791536	T	C	4.11776E-05	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr2	31611143	C	T	0.00117	XDH	-	FALSE
chr2	110842200	C	A	0.00131	MALL	-	FALSE
chr4	25279508	G	A	3.42130E-11	PI4K2B	+	FALSE
chr1	214524496	T	C	0.00114	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	10366487	T	G	0.00187	KIF1B	+	FALSE
chr1	16889624	T	C	0.00795	NBPF1	-	TRUE
chr13	79188534	T	A	0.00698	RNF219-AS1,RNF219	+,-	FALSE
chr12	125269489	C	T	0.00817	SCARB1	-	FALSE
chr1	9643054	A	G	5.80579E-05		.	FALSE	AluSx	SINE,Alu
chr9	140174976	G	T	0.00045	TOR4A	+	FALSE
chr1	114306369	A	T	0.00352	RSBN1	-	FALSE
chr5	149363219	A	G	0.00866	SLC26A2	+	FALSE	AluJr	SINE,Alu
chr2	30863651	A	T	0.00366	LCLAT1	+	FALSE
chr1	6354955	G	A	0.00090	ACOT7	-	FALSE
chr3	98518156	T	A	7.17121E-05	DCBLD2	-	FALSE
chr1	116238478	C	T	0.00834	VANGL1	+	FALSE
chr7	17384393	A	G	1.74996E-06	AHR	+	TRUE	AluSx	SINE,Alu
chr10	104417856	T	A	0.00616	TRIM8	+	FALSE	(AAT)n	SINE,Alu
chr2	132481526	C	A	0.00040	C2orf27A	+	FALSE
chr8	92075904	T	C	0.00242	OTUD6B-AS1	-	FALSE	LTR67B	SINE,Alu
chr1	32638906	C	T	4.63739E-10	KPNA6	+	FALSE
chr5	7878179	C	T	0.00014	MTRR	+	FALSE
chr1	19953120	G	A	0.00197	MINOS1,MINOS1-NBL1	+	FALSE
chr14	31916462	T	C	0.00059	LOC101927124,DTD2	+,-	FALSE	FLAM_C	SINE,Alu
chr1	153617973	A	G	4.00129E-07	CHTOP	+	FALSE
chr1	226171400	T	C	0.00359	SDE2	-	TRUE	BC200	SINE,Alu
chr15	85185045	T	C	0.00210	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr19	42376872	A	G	0.00647		.	FALSE	AluSp	SINE,Alu
chr3	10028294	G	A	1.35555E-07	EMC3	-	FALSE
chr5	40832555	A	T	5.95918E-06	RPL37	-	FALSE
chr1	94351065	A	T	0.00142	GCLM	-	FALSE
chr4	56295166	A	G	0.00988	CLOCK	-	FALSE
chr1	33148045	A	G	0.00264	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr1	45244411	C	A	0.00149	RPS8	+	FALSE
chr7	129963777	T	G	0.00874	CPA4	+	FALSE	(TG)n	SINE,Alu
chr6	13788387	T	C	0.00240	MCUR1	-	TRUE	AluSx	SINE,Alu
chr5	43377330	T	C	0.00039	CCL28	-	TRUE	AluSz	SINE,Alu
chr1	114940209	G	T	5.13716E-05	TRIM33	-	FALSE	(T)n	SINE,Alu
chr2	98089475	T	A	0.00385	LOC100506076,LOC100506123	-	FALSE
chr14	90509564	C	T	0.00552	TDP1	+	FALSE
chr2	206986291	T	C	0.00143		.	FALSE	AluSz	SINE,Alu
chr1	144930596	C	A	0.00103	NBPF20,PDE4DIP	+,-	FALSE
chr13	100638107	A	T	0.00841	ZIC2	+	FALSE
chr1	567191	C	T	0.00428		.	FALSE
chr1	19244904	G	A	0.00487	IFFO2	-	FALSE
chr5	175816759	T	A	0.00018		.	FALSE
chr1	46093396	G	A	0.00048	GPBP1L1	-	FALSE	A-rich	SINE,Alu
chr1	4834606	T	C	0.00647	AJAP1	+	FALSE
chr2	234775941	A	G	0.00161	MSL3P1	-	FALSE
chr1	1337841	C	A	0.00186	MRPL20	-	FALSE
chr2	206986949	T	C	0.00693		.	FALSE	AluJr	SINE,Alu
chr1	155161725	G	A	0.00240	MUC1	-	FALSE
chr1	144614842	C	G	0.00015	NBPF20	+	FALSE
chr5	40831098	T	C	3.69541E-05		.	FALSE	AluSx3	SINE,Alu
chr1	204525548	A	G	0.00027	MDM4	+	TRUE	AluSz	SINE,Alu
chr2	220422583	G	A	0.00089	OBSL1	-	FALSE
chr1	109818270	C	T	0.00996	CELSR2	+	FALSE
chr9	132268442	A	G	0.00642	LINC00963	+	TRUE	AluJb	SINE,Alu
chr2	69688754	T	C	0.00319	AAK1	-	TRUE	AluSq2	SINE,Alu
chr1	10517653	T	C	0.00256		.	FALSE	AluSx1	SINE,Alu
chr1	113243048	C	T	0.00023	MOV10	+	FALSE
chr3	120128940	A	G	0.00434	FSTL1	-	FALSE
chr2	191745653	T	G	0.00030	GLS	+	FALSE
chr1	205112911	T	C	0.00161	DSTYK	-	FALSE
chr3	45721905	A	G	0.00238	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	6282401	T	C	0.00806	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	51434560	G	A	6.87938E-05	CDKN2C	+	FALSE
chr1	154128831	G	T	0.00183	TPM3	-	FALSE
chr1	145512073	A	G	0.00505	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	148558269	A	G	0.00744	NBPF15	+	FALSE	AluJb	SINE,Alu
chr3	58306802	G	A	4.03384E-05		.	FALSE	AluSz	SINE,Alu
chr1	10517958	G	A	0.00149		.	FALSE
chr6	33648144	C	T	0.00453	ITPR3	+	FALSE
chr2	99813020	A	G	0.00015	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	183218871	G	T	0.00025	NMNAT2	-	FALSE
chr1	27678721	A	G	0.00030	SYTL1	+	TRUE	AluSx1	SINE,Alu
chr1	10519912	T	C	0.00750		.	FALSE	AluJr	SINE,Alu
chr2	68402794	T	G	0.00630	PNO1	+	FALSE
chr8	117858602	A	G	0.00133	RAD21	-	FALSE
chr1	40213412	A	G	0.00235	PPIE	+	TRUE	AluSx3	SINE,Alu
chr2	99812414	A	G	9.82924E-05	MRPL30	+	TRUE	AluSx	SINE,Alu
chr7	64435678	T	A	0.00256	ZNF117	-	FALSE
chr4	17803681	T	C	3.85233E-06	DCAF16	-	TRUE	AluY	SINE,Alu
chr1	16893721	A	C	0.00179	NBPF1	-	FALSE
chr2	113334414	A	G	0.00281	POLR1B	+	TRUE	AluSz	SINE,Alu
chr10	16554732	T	A	0.00706	PTER	+	FALSE
chr1	247319705	T	G	6.58458E-05	ZNF124	-	FALSE
chr5	149363218	A	G	0.00233	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr1	36534939	A	G	0.00936		.	FALSE	AluJo	SINE,Alu
chr7	197322	A	G	2.25895E-09	FAM20C	+	FALSE
chr3	49067295	C	A	0.00740	QRICH1	-	FALSE
chr3	10192816	A	G	0.00010	VHL	+	TRUE	AluSx1	SINE,Alu
chr2	101186088	C	T	0.00817	PDCL3	+	FALSE
chr2	37331531	T	C	0.00389		.	FALSE	AluJb	SINE,Alu
chr2	20097874	T	C	0.00769	TTC32	-	FALSE
chr4	39551018	T	C	0.00224	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr6	31379931	G	A	0.00093		.	FALSE
chr6	31110789	T	C	0.00798		.	FALSE
chr4	57327022	A	G	0.00057	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	154554950	G	T	0.00599	ADAR	-	FALSE
chr1	54691910	A	G	0.00481	SSBP3	-	FALSE
chr1	92862457	A	G	0.00974		.	FALSE	AluSp	SINE,Alu
chr1	93617403	T	G	0.00053	TMED5	-	FALSE
chr7	5085646	C	T	0.00168	RBAK-RBAKDN,RBAK	+	FALSE
chr7	55433880	G	C	0.00115	LANCL2	+	FALSE
chr2	73460316	G	T	0.00368	PRADC1	-	FALSE	(CGGCGC)n	SINE,Alu
chr1	145513098	A	G	0.00514	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr12	98943102	A	G	0.00250	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	25554719	G	A	0.00403	SYF2	-	FALSE
chr14	90509582	T	C	0.00017	TDP1	+	FALSE
chr1	89447854	G	T	0.00310	KYAT3,RBMXL1	-	FALSE
chr1	12082926	A	G	0.00594	MIIP	+	FALSE
chr1	10519910	T	C	7.27344E-07		.	FALSE	AluJr	SINE,Alu
chr16	66923393	A	G	0.00228	PDP2	+	TRUE	AluSz	SINE,Alu
chr1	10517276	T	C	0.00039		.	FALSE	AluJr	SINE,Alu
chr6	42856158	A	G	0.00118	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	87379497	A	G	0.00067	SEP15	-	FALSE
chr2	20401859	A	T	0.00023	SDC1	-	FALSE	(A)n	SINE,Alu
chr2	28639641	C	G	0.00431		.	FALSE
chr1	150704483	T	C	0.00028	CTSS	-	TRUE	AluJo	SINE,Alu
chr22	31744347	A	G	0.00113	LINC01521	+	TRUE	AluSp	SINE,Alu
chr1	212114663	G	A	0.00858	INTS7	-	FALSE
chr1	108114598	C	T	0.00863	VAV3	-	FALSE
chr5	177577138	T	C	0.00163	NHP2	-	FALSE
chr1	179042719	A	G	2.68049E-06	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	9163400	T	C	0.00726		.	FALSE	AluSp	SINE,Alu
chr2	219146868	T	C	0.00764	PNKD,TMBIM1	+,-	FALSE
chr1	33149399	A	G	0.00148	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	19542631	T	C	0.00741	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr7	6501819	A	T	0.00037	KDELR2	-	FALSE
chr4	39552174	T	C	0.00026	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr1	16893691	C	A	0.00371	NBPF1	-	FALSE
chr3	33038222	A	T	0.00379	GLB1	-	FALSE
chr4	129796173	G	T	1.40481E-05	JADE1	+	FALSE
chr2	131906031	C	T	0.00439	PLEKHB2	+	FALSE
chr2	174090636	T	A	0.00320	ZAK,MLK7-AS1	+,-	FALSE
chr17	8286136	T	A	0.00706	RPL26	-	FALSE
chr1	17345245	C	T	0.00701	SDHB	-	FALSE
chr1	144828784	A	G	0.00053	NBPF20,NBPF9	+	FALSE
chr1	31838550	T	A	0.00595	FABP3	-	FALSE
chr1	9328255	A	G	0.00729	H6PD	+	TRUE	AluJr	SINE,Alu
chr2	174086940	C	A	0.00047	ZAK,MLK7-AS1	+,-	FALSE	AluJo	SINE,Alu
chr1	19586458	A	G	0.00029	MRTO4	+	TRUE	AluSz	SINE,Alu
chr2	240954005	C	A	0.00021	NDUFA10	-	FALSE
chr1	33148216	A	G	0.00321	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr13	52327020	G	A	0.00019	WDFY2	+	FALSE
chr16	81745173	C	A	0.00179	CMIP	+	FALSE
chr1	40539201	A	G	0.00028	PPT1	-	FALSE
chr5	134062608	G	T	0.00171	SEC24A	+	FALSE
chr17	7123232	C	G	0.00250	DLG4,ACADVL	+,-	FALSE
chr4	73957426	G	T	0.00434	ANKRD17	-	FALSE
chr2	38971040	G	T	0.00651	SRSF7	-	FALSE
chr2	85776508	A	T	0.00747	GGCX	-	FALSE	AluSz6	SINE,Alu
chr1	220231254	T	C	0.00974	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	36320634	T	C	0.00190	AGO4	+	FALSE
chr2	86252038	T	C	0.00931	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr1	6683581	A	C	0.00126	PHF13	+	FALSE
chr6	74134869	T	C	0.00024	MB21D1	-	TRUE	AluSz	SINE,Alu
chr1	145375858	T	C	0.00069	NBPF20,NBPF10	+	FALSE
chr1	33148118	A	G	0.00316	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	36316571	A	C	0.00893	AGO4	+	FALSE
chr2	46852033	A	G	0.00543	CRIPT	+	FALSE
chr4	56237899	A	G	0.00503	SRD5A3,SRD5A3-AS1	+,-	FALSE	AluSx	SINE,Alu
chr3	44790781	T	C	0.00887	KIAA1143	-	TRUE	AluY	SINE,Alu
chr1	9161142	T	C	0.00160		.	FALSE	AluSx	SINE,Alu
chr3	11596302	T	C	0.00110	ATG7	+	FALSE
chr3	16299968	G	A	0.00470	DPH3	-	FALSE
chr5	130537998	A	G	0.00380	LYRM7	+	TRUE	AluSp	SINE,Alu
chr11	32623987	T	A	5.29256E-06	CCDC73,EIF3M	+,-	FALSE
chr1	146495577	T	A	0.00072	LOC728989	-	FALSE
chr1	27202845	T	C	0.00034		.	FALSE	AluSq2	SINE,Alu
chr1	175914284	A	G	0.00036	RFWD2	-	FALSE
chr6	29704336	G	A	0.00207		.	FALSE	L1ME3A	SINE,Alu
chr1	19586458	A	G	2.46370E-10	MRTO4	+	TRUE	AluSz	SINE,Alu
chr3	30733403	A	T	0.00840	TGFBR2	+	FALSE	(TA)n	SINE,Alu
chr3	15113847	T	C	0.00026	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	214524044	T	C	0.00242	PTPN14	-	TRUE	AluSx	SINE,Alu
chr10	15120179	T	C	3.12210E-06	ACBD7	-	FALSE	L1PA7	SINE,Alu
chr2	209221291	T	G	0.00033	PIKFYVE	+	FALSE	AluSx	SINE,Alu
chr1	236716959	C	T	0.00727	HEATR1	-	FALSE
chr1	1337737	G	C	2.51903E-05	MRPL20	-	FALSE
chr3	196082911	T	C	0.00250	UBXN7	-	FALSE
chr2	210885022	C	T	0.00325	RPE	+	FALSE
chr5	79923990	T	C	0.00812	DHFR	-	TRUE	AluSp	SINE,Alu
chr12	133297961	A	G	1.06136E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr2	217366866	A	G	0.00247		.	FALSE	AluSz6	SINE,Alu
chr1	151372040	A	T	0.00825		.	FALSE
chr7	6501828	C	A	0.00110	KDELR2	-	FALSE
chr1	209605646	A	C	0.00478	MIR205HG	+	FALSE	(AGC)n	SINE,Alu
chr1	201975173	G	T	0.00356	RNPEP	+	FALSE
chr10	51943605	C	T	0.00508		.	FALSE	MLT1J	SINE,Alu
chr1	200521412	G	A	0.00110	KIF14	-	FALSE
chr19	58375707	A	G	0.00156	ZNF587	+	TRUE	AluSg	SINE,Alu
chr5	81571877	C	T	0.00033	RPS23	-	FALSE
chr2	224621887	T	C	0.00373	AP1S3	-	FALSE	AluSc	SINE,Alu
chr1	10521126	T	C	0.00560	DFFA	-	TRUE	AluY	SINE,Alu
chr7	127945549	C	T	0.00051	MGC27345	-	FALSE	FLAM_C	SINE,Alu
chr1	33148736	A	G	0.00849	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr19	42376711	A	G	5.78075E-06		.	FALSE	AluSp	SINE,Alu
chr1	231557255	C	G	0.00056	EGLN1	-	FALSE	(GCC)n	SINE,Alu
chr1	33148213	A	G	0.00080	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	153587256	A	T	0.00013	S100A14	-	FALSE
chr1	114227223	G	A	0.00699	MAGI3	+	FALSE
chr1	27204865	T	C	0.00042		.	FALSE	AluSx	SINE,Alu
chr4	56298300	G	A	7.51019E-06	CLOCK	-	FALSE
chr2	11323276	T	C	0.00219	ROCK2	-	FALSE
chr2	238678002	C	G	0.00711	LRRFIP1	+	FALSE
chr21	47676711	G	A	0.00316	MCM3AP	-	FALSE
chr14	23794554	G	A	0.00966	BCL2L2-PABPN1,PABPN1	+	FALSE	A-rich	SINE,Alu
chr2	183817957	T	A	0.00031	NCKAP1	-	FALSE
chr7	75115154	C	T	0.00405	POM121C	-	FALSE
chr1	171501831	A	G	0.00037	PRRC2C	+	FALSE
chr16	81744038	T	C	6.34278E-05	CMIP	+	FALSE	(CCGC)n	SINE,Alu
chr2	232319499	T	A	0.00165	NCL	-	FALSE
chr12	56510696	A	T	0.00015	RPL41	+	FALSE
chr16	23582262	T	G	0.00101	UBFD1	+	FALSE
chr7	65618786	A	G	3.58027E-08	CRCP	+	TRUE	AluSx3	SINE,Alu
chr1	154315369	C	T	0.00022	ATP8B2	+	FALSE
chr1	32158374	T	C	0.00134	COL16A1	-	FALSE
chr1	148003749	T	C	0.00114	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr1	19586532	A	G	0.00166	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	211836207	T	A	0.00432	NEK2	-	FALSE
chr17	46024807	C	T	0.00295	PNPO	+	FALSE
chr1	10520487	T	C	0.00559		.	FALSE	AluSx1	SINE,Alu
chr1	24286327	G	A	0.00053	PNRC2	+	FALSE
chr2	216300795	C	G	0.00641		.	FALSE
chr5	177576463	A	T	0.00554		.	FALSE
chr5	125961623	A	G	6.78430E-09	PHAX	+	TRUE	AluSz6	SINE,Alu
chr2	37329307	T	C	0.00102		.	FALSE	AluJr4	SINE,Alu
chr3	119388380	T	C	0.00110	COX17	-	FALSE
chr1	114940228	C	T	0.00734	TRIM33	-	FALSE	(T)n	SINE,Alu
chr3	9935263	A	G	1.04104E-09	JAGN1	+	FALSE
chr3	99516879	A	T	0.00667	MIR548G	-	FALSE
chr3	57743171	C	T	1.04824E-07	SLMAP	+	FALSE
chr1	19665566	A	C	0.00028	CAPZB	-	FALSE
chr1	16892277	G	T	0.00021	NBPF1	-	FALSE
chr19	53914417	A	G	0.00013	ZNF765	+	TRUE	AluSx	SINE,Alu
chr1	11084103	T	A	0.00044	TARDBP	+	FALSE
chr19	1457883	C	G	2.74690E-05	APC2	+	FALSE
chr4	6689813	C	A	0.00141		.	FALSE	L2b	SINE,Alu
chr5	140564263	C	T	0.00475	PCDHB16	+	FALSE
chr10	51613297	A	G	0.00347	TIMM23B,TIMM23	+,-	FALSE
chr2	206858904	C	T	0.00783	INO80D	-	FALSE
chr15	40954864	A	G	0.00636	KNL1	+	TRUE
chr1	67875026	A	T	0.00557	SERBP1	-	FALSE
chr1	100658578	G	A	0.00382	DBT	-	FALSE
chr5	174956494	T	A	2.51545E-05	SFXN1	+	FALSE
chr7	138732191	T	C	0.00746	ZC3HAV1	-	TRUE	MER5B	SINE,Alu
chr1	6614188	C	T	0.00906	NOL9	-	FALSE
chr2	100897573	G	A	0.00231	LONRF2	-	FALSE
chr3	30733403	A	T	0.00110	TGFBR2	+	FALSE	(TA)n	SINE,Alu
chr1	205320469	G	A	0.00109	KLHDC8A	-	FALSE
chr17	65335356	T	C	5.15611E-11	PSMD12	-	TRUE	AluSx	SINE,Alu
chr3	45721891	A	G	0.00163	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	9644558	A	G	0.00451		.	FALSE	AluSx	SINE,Alu
chr2	204162036	A	G	0.00369	CYP20A1	+	TRUE	AluSx	SINE,Alu
chr7	131241085	G	A	0.00600	PODXL	-	FALSE	(GCA)n	SINE,Alu
chr1	1017747	A	G	0.00142	C1orf159	-	FALSE
chr4	57326291	A	G	0.00415	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	14590	G	A	0.00050	WASH7P	-	FALSE
chr1	6948076	C	T	0.00221	CAMTA1	+	FALSE	L2a	SINE,Alu
chr5	6748659	T	C	0.00032	PAPD7	+	FALSE
chr3	15113694	T	C	0.00622	RBSN	-	TRUE	AluSz6	SINE,Alu
chr16	48387215	A	G	0.00864	LONP2,MIR5095	+	TRUE	AluJb	SINE,Alu
chr1	109605645	T	G	0.00478		.	FALSE	AluY	SINE,Alu
chr1	1662754	T	C	0.00107	SLC35E2	-	TRUE	AluY	SINE,Alu
chr3	98516118	T	A	0.00541	DCBLD2	-	FALSE
chr1	28826085	A	G	0.00196	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	203822584	T	C	5.41257E-07	ZC3H11A	+	FALSE
chr1	145509493	A	G	0.00264	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr2	86252038	T	C	0.00453	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr2	128601556	T	C	3.22117E-06		.	FALSE	AluJr	SINE,Alu
chr12	98942695	A	G	0.00204	TMPO	+	TRUE	AluSc	SINE,Alu
chr2	32532809	A	G	0.00255		.	FALSE	AluSx1	SINE,Alu
chr16	10624957	T	C	0.00034	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	10520702	T	C	0.00883	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	224302047	C	T	3.20569E-05	FBXO28	+	FALSE
chr5	179048449	T	G	0.00394	HNRNPH1	-	FALSE
chr2	37331065	T	C	0.00017		.	FALSE	AluSx1	SINE,Alu
chr1	145112414	T	C	0.00079	NBPF20,SEC22B	+	FALSE
chr1	9163839	A	G	0.00237		.	FALSE
chr1	3395039	G	A	0.00027	ARHGEF16	+	FALSE
chr1	145512937	A	G	0.00443	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr14	53242354	T	C	3.85910E-06	GNPNAT1	-	TRUE	AluJo	SINE,Alu
chr2	58387000	C	T	0.00027	VRK2,FANCL	+,-	FALSE
chr1	180169330	C	T	0.00015	FLJ23867	+	FALSE	MIR	SINE,Alu
chr2	191065246	T	A	0.00594	C2orf88	+	FALSE
chr6	42856156	A	G	0.00190	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	10519912	T	C	5.10285E-06		.	FALSE	AluJr	SINE,Alu
chr1	45975358	A	G	0.00807	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	10520219	T	C	0.00201		.	FALSE	AluSx	SINE,Alu
chr17	56081432	G	A	4.92367E-05	SRSF1	-	FALSE
chr4	247533	A	G	0.00972	ZNF876P	+	FALSE
chr1	154128839	G	T	0.00579	TPM3	-	FALSE
chr5	93018883	A	T	0.00393	FAM172A	-	FALSE	(TCA)n	SINE,Alu
chr1	146647196	T	C	0.00241		.	FALSE	THE1D	SINE,Alu
chr1	153917621	G	C	0.00020	DENND4B	-	FALSE
chr8	95804490	A	G	0.00219	DPY19L4	+	TRUE	AluSq2	SINE,Alu
chr9	96438967	G	C	0.00648	PHF2	+	FALSE	(CTCCAC)n	SINE,Alu
chr1	19586519	A	G	0.00015	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	154317153	C	T	0.00483	ATP8B2	+	FALSE
chr6	42047553	A	G	0.00359	TAF8	+	TRUE	AluSz6	SINE,Alu
chr1	33148635	A	G	5.17667E-05	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	16889866	G	A	0.00995	NBPF1	-	FALSE
chr1	19232017	T	G	0.00519	IFFO2	-	FALSE
chr1	22853141	G	A	0.00060	ZBTB40	+	FALSE
chr7	7283569	G	A	0.00032	C1GALT1	+	FALSE	(AT)n	SINE,Alu
chr14	105270478	G	T	0.00252	ZBTB42	+	FALSE
chr3	30735330	G	T	0.00401	TGFBR2	+	FALSE
chr1	118167515	C	T	2.81283E-05	FAM46C	+	FALSE
chr5	40832551	A	T	0.00394	RPL37	-	FALSE
chr2	37330476	T	C	2.74271E-05		.	FALSE	AluSq2	SINE,Alu
chr17	46025078	A	G	0.00021	PNPO	+	TRUE	AluSc	SINE,Alu
chr1	8412989	A	G	0.00225	RERE	-	FALSE
chr17	38788606	G	T	1.11022E-15	SMARCE1	-	FALSE
chr1	246829616	T	C	0.00029	CNST	+	FALSE
chr1	145291217	C	T	0.00075	NBPF20	+	FALSE
chr1	10516656	C	T	0.00808		.	FALSE
chr3	196670090	G	A	0.00059	NCBP2-AS2	+	FALSE
chr4	38016395	T	G	0.00537	TBC1D1	+	FALSE
chr1	10517314	T	C	0.00368		.	FALSE	AluJr	SINE,Alu
chr2	85773623	T	C	0.00203	GGCX	-	TRUE	AluSx1	SINE,Alu
chr1	205583612	C	A	0.00311	ELK4	-	FALSE
chr1	36535560	A	G	0.00059		.	FALSE	AluSx1	SINE,Alu
chr1	46827871	G	A	0.00860	NSUN4	+	FALSE
chr1	10367424	G	A	0.00286	KIF1B	+	FALSE	AluSx	SINE,Alu
chr1	179042692	A	G	0.00707	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr17	73940077	T	C	0.00146	ACOX1	-	TRUE	AluJb	SINE,Alu
chr20	3848225	A	G	0.00075	MAVS	+	TRUE	AluJr	SINE,Alu
chr2	37331627	T	C	0.00030		.	FALSE	AluJb	SINE,Alu
chr1	121133995	G	C	0.00575	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr2	153506056	T	C	0.00252	FMNL2	+	FALSE
chr4	129795660	T	A	0.00454	JADE1	+	FALSE
chr1	9324213	C	T	0.00063	H6PD	+	FALSE
chr10	13320123	C	A	0.00830	PHYH	-	FALSE
chr1	155853219	A	G	0.00520	SYT11	+	TRUE	AluJb	SINE,Alu
chr1	16576836	A	G	0.00885	FBXO42	-	FALSE

RBP	TARDBP
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR527QNC
Platform	HiSeq
Pubmed ID	32252787

TARDBP - Target Gene Network