RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr5	149763305	A	G	0.00640	TCOF1	+	FALSE
chr1	179813613	T	C	7.15786E-05	TOR1AIP2	-	FALSE
chr2	85773494	T	C	0.00099	GGCX	-	TRUE	AluY	SINE,Alu
chr3	53259329	G	C	0.00036	TKT	-	FALSE
chr3	14986098	T	C	0.00000	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr12	7175047	A	G	0.00634	C1S	+	FALSE
chr2	227662565	A	C	0.00028	IRS1	-	FALSE
chr3	49396588	T	C	0.00533	RHOA	-	FALSE
chr1	184761365	A	G	0.00758	FAM129A	-	FALSE	AluJo	SINE,Alu
chr1	114443458	A	G	0.00320	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr3	40353791	A	T	0.00419	EIF1B	+	FALSE
chr19	4423353	G	A	0.00057	CHAF1A	+	FALSE	GA-rich	SINE,Alu
chr1	10520683	T	C	0.00790	DFFA	-	TRUE	AluSc8	SINE,Alu
chr6	126661502	G	T	0.00873	CENPW	+	FALSE
chr1	220239448	T	C	0.00157	RNU5F-1,BPNT1	+,-	FALSE
chr1	26802457	C	A	0.00962	HMGN2	+	FALSE
chr1	16575726	T	C	0.00916	FBXO42	-	FALSE
chr1	900720	A	T	0.00065	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr1	28825465	A	G	0.00496	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr19	58372320	A	G	0.00510	ZNF587	+	TRUE	AluSz	SINE,Alu
chr6	3021448	T	C	0.00126	HTATSF1P2	-	TRUE	AluJr4	SINE,Alu
chr5	75469427	G	A	0.00155	SV2C	+	FALSE
chr2	38971640	A	C	0.00050	SRSF7	-	FALSE
chr1	67874731	T	C	0.00613	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr14	62213927	C	A	0.00771	HIF1A,HIF1A-AS2	+,-	FALSE
chr2	128601556	T	C	3.22117E-06		.	FALSE	AluJr	SINE,Alu
chr4	2940147	T	C	0.00036	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr2	99812988	A	G	0.00793	MRPL30	+	TRUE	AluJb	SINE,Alu
chr2	1636957	A	T	0.00589	PXDN	-	FALSE
chr6	71298816	A	T	0.00287		.	FALSE
chr2	37331019	T	C	0.00033		.	FALSE	AluSx1	SINE,Alu
chr1	44438961	A	G	0.00013	DPH2	+	FALSE	MER3	SINE,Alu
chr1	152187183	C	A	0.00373	HRNR	-	FALSE
chr1	51738627	A	G	0.00024	RNF11	+	FALSE
chr3	41281407	G	T	0.00288	CTNNB1	+	FALSE
chr16	81064533	A	G	0.00686	CENPN	+	TRUE	AluSg	SINE,Alu
chr3	101576175	T	C	0.00246	NFKBIZ	+	FALSE
chr1	43272842	A	T	5.93810E-05	SVBP	-	FALSE
chr6	74304013	T	C	3.72993E-06	SLC17A5	-	TRUE	AluSx3	SINE,Alu
chr6	33384325	G	T	0.00456		.	FALSE
chr1	45987557	G	C	0.00921	PRDX1	-	FALSE
chr2	178482698	A	G	0.00408	TTC30A	-	FALSE
chr3	57613144	T	C	0.00959	DENND6A,PDE12	+,-	FALSE	AluSz	SINE,Alu
chr12	56510696	A	T	0.00767	RPL41	+	FALSE
chr1	26608012	C	A	0.00564	SH3BGRL3	+	FALSE
chr5	96372165	G	A	0.00149		.	FALSE
chr1	10519048	T	C	0.00728		.	FALSE	AluSx3	SINE,Alu
chr1	185069687	C	T	0.00072	RNF2	+	FALSE
chr1	36068231	T	C	0.00582	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	28636644	A	G	0.00269	FOSL2	+	FALSE
chr1	17199309	G	A	0.00398	LOC440570	+	FALSE
chr1	3546128	A	G	0.00703	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr5	180663941	G	T	0.00166	RACK1	-	FALSE
chr2	61277443	A	G	0.00362	PEX13	+	TRUE	AluSx	SINE,Alu
chr1	225683182	C	T	0.00056	ENAH	-	FALSE
chr5	180669695	T	C	0.00101	RACK1	-	TRUE	AluSx1	SINE,Alu
chr1	36067838	T	C	1.55029E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	19585519	A	G	3.44907E-05	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr15	63363388	G	T	0.00096	TPM1	+	FALSE
chr5	149823799	A	T	0.00672	RPS14	-	FALSE
chr5	150869672	A	T	0.00755	SLC36A1	+	FALSE
chr4	6689813	C	A	0.00141		.	FALSE	L2b	SINE,Alu
chr1	16890639	C	T	5.60894E-05	NBPF1	-	FALSE
chr14	70838268	T	C	0.00365	SYNJ2BP-COX16,SYNJ2BP	-	TRUE	AluSg	SINE,Alu
chr2	206987108	T	C	0.00015		.	FALSE	AluSx	SINE,Alu
chr2	86252025	T	C	3.86923E-05	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr17	79476999	G	T	6.09622E-06	ACTG1	-	FALSE
chr1	36067677	T	C	0.00462	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	114306369	A	T	0.00341	RSBN1	-	FALSE
chr15	52202957	G	T	0.00094	TMOD3	+	FALSE	(T)n	SINE,Alu
chr6	43582795	A	G	0.00087	POLH	+	TRUE	AluSx1	SINE,Alu
chr1	16061035	G	C	0.00089	PLEKHM2	+	FALSE
chr4	13583889	T	C	2.08207E-10	BOD1L1	-	FALSE
chr1	115313039	A	G	0.00895	SIKE1	-	FALSE
chr1	53289790	C	T	0.00281	ZYG11B	+	FALSE	AluSz	SINE,Alu
chr1	200375835	G	T	0.00063	ZNF281	-	FALSE	(T)n	SINE,Alu
chr12	53435627	A	G	0.00133	EIF4B	+	FALSE
chr1	163288931	G	A	0.00284	RGS5	-	FALSE	MamRep1527	SINE,Alu
chr4	57801196	G	A	0.00485	REST	+	FALSE
chr2	203743821	T	C	0.00880		.	FALSE	AluSx3	SINE,Alu
chr1	95658344	G	A	0.00100	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr2	131104524	G	A	0.00912	IMP4	+	FALSE	L1MA9	SINE,Alu
chr7	48146088	A	G	0.00825	UPP1	+	TRUE	AluSq	SINE,Alu
chr12	56532056	G	C	0.00743	ESYT1	+	FALSE
chr1	144481235	A	G	1.18230E-05	NBPF20	+	FALSE
chr1	25894464	G	A	0.00527	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	32661615	A	T	0.00225	TXLNA	+	FALSE
chr1	10517276	T	C	0.00039		.	FALSE	AluJr	SINE,Alu
chr1	78029905	T	A	0.00256	ZZZ3	-	FALSE
chr3	75779650	G	C	0.00116	ZNF717	-	FALSE
chr2	37334184	T	A	0.00202	EIF2AK2	-	FALSE	AluSz	SINE,Alu
chr1	114306374	G	A	0.00124	RSBN1	-	FALSE
chr2	136542434	A	T	0.00606	UBXN4	+	FALSE	L1ME4b	SINE,Alu
chr2	32535797	A	G	0.00910		.	FALSE	AluJb	SINE,Alu
chr3	45721922	A	G	0.00181	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr2	236957822	G	A	0.00929	AGAP1	+	FALSE
chr1	33149508	A	G	0.00032	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr3	195964298	A	G	0.00263		.	FALSE
chr7	99006740	G	A	0.00269	BUD31	+	FALSE
chr5	154196577	C	T	0.00906	LARP1	+	FALSE
chr1	20975992	T	C	0.00027	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr3	48787052	T	C	0.00631	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr3	196728813	C	T	0.00068	MELTF	-	FALSE
chr1	39305021	G	T	0.00027	RRAGC	-	FALSE
chr1	148753329	A	G	7.42327E-05		.	FALSE
chr1	9324670	A	G	0.00734	H6PD	+	FALSE
chr1	10520684	T	C	0.00842	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	45975574	A	G	0.00613	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr3	12857493	C	T	0.00720	CAND2	+	FALSE
chr2	39212563	G	T	9.15843E-06	SOS1	-	FALSE
chr1	19545144	G	T	0.00071	LOC101927895,EMC1	+,-	FALSE
chr19	12742509	A	G	0.00717		.	FALSE	AluSx	SINE,Alu
chr17	65334856	T	C	1.38810E-06	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	9162247	T	C	0.00549		.	FALSE	AluSx	SINE,Alu
chr9	138798859	C	A	0.00291	CAMSAP1	-	FALSE
chr1	10519932	T	C	0.00547		.	FALSE	AluJr	SINE,Alu
chr14	74179051	T	C	0.00982	PNMA1	-	FALSE	Charlie15b	SINE,Alu
chr1	45452227	G	C	0.00046	EIF2B3	-	FALSE
chr1	78483452	C	T	0.00739	DNAJB4	+	FALSE	L1MB7	SINE,Alu
chr2	10567337	G	C	0.00940	HPCAL1	+	FALSE
chr1	10520487	T	C	0.00638		.	FALSE	AluSx1	SINE,Alu
chr2	196600548	G	T	0.00036	SLC39A10	+	FALSE
chr12	56815652	C	T	1.92663E-05	TIMELESS	-	FALSE
chr6	150047376	T	C	0.00306	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	74672323	C	A	0.00616	FPGT-TNNI3K,FPGT	+	FALSE	X12_DNA	SINE,Alu
chr1	33149508	A	G	0.00107	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr5	140025058	G	T	0.00392	NDUFA2	-	FALSE
chr1	95392593	C	T	0.00173	CNN3	-	FALSE	(GGCGCG)n	SINE,Alu
chr1	44463185	T	G	0.00469	SLC6A9	-	FALSE
chr20	43707842	A	G	0.00100	STK4	+	TRUE	AluJb	SINE,Alu
chr1	204521160	A	G	0.00231	MDM4	+	TRUE	AluSp	SINE,Alu
chr1	36770599	G	T	0.00123	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	145209366	A	G	0.00499	NBPF20,NOTCH2NL	+	FALSE
chr13	79188534	T	A	0.00698	RNF219-AS1,RNF219	+,-	FALSE
chr5	10265488	A	G	0.00120	CCT5	+	FALSE
chr8	144827206	A	T	0.00196	FAM83H-AS1	+	FALSE	ERVL-B4-int	SINE,Alu
chr3	50150360	A	G	0.00827	RBM5	+	TRUE	AluSx	SINE,Alu
chr1	20826786	T	A	0.00030	MUL1	-	FALSE
chr8	143413136	C	T	0.00267	TSNARE1	-	FALSE
chr1	145369709	A	G	0.00258	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr3	98518157	A	T	8.60022E-05	DCBLD2	-	FALSE
chr17	28506279	G	A	0.00634	NSRP1	+	FALSE
chr4	52888499	G	A	8.91315E-05	SGCB	-	FALSE
chr3	52289709	G	C	4.88711E-11	WDR82	-	FALSE	MIR	SINE,Alu
chr4	160280309	G	T	0.00770	RAPGEF2	+	FALSE	(T)n	SINE,Alu
chr3	49506286	G	T	0.00052	DAG1	+	FALSE	AluJb	SINE,Alu
chr1	10517306	T	C	0.00176		.	FALSE	AluJr	SINE,Alu
chr6	42855101	A	G	0.00329	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr3	178954055	T	C	0.00308	PIK3CA	+	FALSE
chr20	36147563	T	C	0.00313	BLCAP	-	TRUE
chr1	197476807	G	C	0.00287	DENND1B	-	FALSE
chr1	109475543	A	G	0.00495	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	15755248	C	T	0.00405	EFHD2	+	FALSE
chr2	206983093	T	C	0.00118		.	FALSE	AluJb	SINE,Alu
chr1	28825331	A	G	0.00024	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	33149496	A	G	0.00662	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	118502771	A	G	0.00466	WDR3,SPAG17	+,-	FALSE	(GT)n	SINE,Alu
chr1	881627	G	A	2.43828E-05	NOC2L	-	FALSE
chr1	65299548	T	A	0.00852	JAK1	-	FALSE
chr2	101010082	G	C	0.00965	CHST10	-	FALSE
chr6	74134008	T	C	0.00337		.	FALSE	AluY	SINE,Alu
chr1	6583383	T	C	0.00305	NOL9	-	TRUE	AluSq	SINE,Alu
chr19	2917287	C	A	0.00243	ZNF57	+	FALSE
chr1	97144750	T	C	0.00262		.	FALSE
chr2	23865260	T	C	0.00262	KLHL29	+	FALSE
chr14	50361197	G	T	1.76251E-06	ARF6	+	FALSE
chr1	23381596	T	C	0.00762	KDM1A	+	FALSE
chr1	121133995	G	C	0.00575	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr1	10521254	T	C	0.00023	DFFA	-	TRUE	AluY	SINE,Alu
chr2	33623905	G	T	0.00262	LTBP1	+	FALSE
chr1	45244432	T	A	0.00154		.	FALSE
chr1	89447839	C	G	0.00589	KYAT3,RBMXL1	-	FALSE
chr3	73115786	T	C	3.88619E-05	PPP4R2	+	FALSE
chr1	150937963	A	G	0.00658	CERS2	-	FALSE	G-rich	SINE,Alu
chr2	101622883	T	A	0.00440	RPL31	+	FALSE
chr1	33148623	A	G	0.00221	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chrX	102613351	A	G	0.00969	TCEAL9	+	FALSE	L1ME4a	SINE,Alu
chr3	195395402	C	A	0.00066	SDHAP2	+	FALSE
chr1	179042482	A	G	0.00301	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	118411057	T	G	0.00254	GDAP2	-	FALSE
chr1	1431295	T	C	0.00400	ATAD3B	+	FALSE
chr21	40567668	G	A	0.00559	BRWD1	-	FALSE
chr1	44685732	T	C	9.79150E-12	DMAP1	+	FALSE
chr5	130537710	A	G	0.00899	LYRM7	+	TRUE	AluJb	SINE,Alu
chr1	46075191	C	A	0.00457	NASP	+	FALSE	A-rich	SINE,Alu
chr2	178406769	A	T	0.00416	AGPS	+	FALSE
chr2	202029997	A	G	0.00335	CFLAR	+	FALSE	(TTA)n	SINE,Alu
chr2	192699639	A	G	0.00017	SDPR	-	FALSE
chr3	15483830	A	G	3.44106E-05	EAF1	+	FALSE
chr1	37948912	C	T	0.00084	ZC3H12A	+	FALSE
chr1	235715523	A	G	0.00660	GNG4	-	FALSE
chr1	1309464	C	T	1.11022E-16	AURKAIP1	-	FALSE
chr2	99812876	A	G	0.00394	MRPL30	+	TRUE	AluJb	SINE,Alu
chr2	11323276	T	C	0.00219	ROCK2	-	FALSE
chr1	143186597	G	A	0.00644	LOC102723769	-	FALSE
chr1	53291408	A	G	0.00931	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr2	206982257	T	C	0.00023		.	FALSE	AluSg7	SINE,Alu
chr1	46077218	A	G	0.00543	NASP	+	TRUE	AluSc8	SINE,Alu
chr1	20977913	T	G	0.00201	PINK1,PINK1-AS	+,-	FALSE
chr12	125512541	A	G	6.52088E-06		.	FALSE
chr1	15832543	T	C	0.00553	CASP9	-	FALSE
chr7	35840866	A	G	0.00947	SEPT7	+	FALSE
chr1	160965379	T	C	0.00477	F11R	-	TRUE	AluSc	SINE,Alu
chr1	32661578	C	T	0.00694	TXLNA	+	FALSE	(T)n	SINE,Alu
chr4	177241194	C	T	6.44832E-08	SPCS3	+	FALSE
chr17	65335292	T	C	6.31480E-06	PSMD12	-	TRUE	AluSx	SINE,Alu
chr7	29963082	G	A	0.00118	SCRN1	-	FALSE
chr4	39551140	T	C	1.44695E-08	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	155403823	A	G	0.00850	ASH1L,POU5F1P4	+,-	FALSE
chr11	44641025	G	A	0.00850	CD82	+	FALSE
chr5	125961573	A	G	0.00217	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	16576291	A	G	0.00842	FBXO42	-	FALSE	A-rich	SINE,Alu
chr4	13604182	T	C	1.45661E-06	BOD1L1	-	FALSE
chr1	16889575	T	C	0.00467	NBPF1	-	TRUE
chr1	19499560	T	C	0.00226	UBR4	-	FALSE
chr3	100084432	G	A	0.00321	TOMM70	-	FALSE
chr3	10193358	A	G	0.00765	VHL	+	TRUE	L1ME4a	SINE,Alu
chr1	25889571	G	A	0.00344	LDLRAP1	+	FALSE
chr1	46093407	C	A	0.00700	GPBP1L1	-	FALSE	A-rich	SINE,Alu
chr2	152334323	A	G	0.00504		.	FALSE	AluSq	SINE,Alu
chr12	93192784	C	T	0.00423	EEA1	-	FALSE
chr9	132266648	A	G	0.00230	LINC00963	+	TRUE	AluSx	SINE,Alu
chr1	148252049	A	C	0.00666	NBPF8,NBPF14,NBPF9	-	FALSE
chr3	44790781	T	C	0.00060	KIAA1143	-	TRUE	AluY	SINE,Alu
chr2	37331745	T	C	0.00097		.	FALSE	AluJb	SINE,Alu
chr1	11347150	C	A	0.00380	UBIAD1	+	FALSE
chr1	120612163	C	A	0.00566	NOTCH2	-	FALSE
chr1	79109352	T	G	0.00818	IFI44L	+	FALSE	LTR26	SINE,Alu
chr1	46164493	T	C	0.00977	IPP	-	TRUE	AluJb	SINE,Alu
chr1	160967848	T	C	0.00200	F11R	-	TRUE	AluSp	SINE,Alu
chr7	64435684	T	G	0.00239	ZNF117	-	FALSE
chr1	32953214	A	G	0.00837	ZBTB8B	+	TRUE	AluSz	SINE,Alu
chr4	84525974	T	C	0.00255	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr19	18476232	A	G	0.00189	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr1	52817376	T	C	0.00175	CC2D1B	-	TRUE	AluSg4	SINE,Alu
chr14	23441536	G	A	0.00793	AJUBA	-	FALSE	GA-rich	SINE,Alu
chr1	144931392	G	A	0.00241	NBPF20,PDE4DIP	+,-	FALSE
chr19	58375157	A	G	0.00408	ZNF587	+	TRUE	AluSx4	SINE,Alu
chr2	61705068	A	T	0.00103		.	FALSE
chr16	66765441	G	T	4.44089E-16	DYNC1LI2	-	FALSE	L2c	SINE,Alu
chr1	214524633	T	A	0.00017	PTPN14	-	FALSE	Alu	SINE,Alu
chr12	133298095	A	G	0.00081	PGAM5	+	TRUE	AluJo	SINE,Alu
chr6	42856156	A	G	0.00105	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr2	99812817	A	G	0.00018	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	3545200	G	A	0.00381	TPRG1L	+	FALSE
chr12	72182168	G	C	0.00867	RAB21	+	FALSE
chr14	53243434	T	C	5.94655E-10	GNPNAT1	-	TRUE	AluSx3	SINE,Alu
chr1	225611661	C	T	0.00113	LBR	-	FALSE
chr9	91724517	C	T	0.00289	SHC3	-	FALSE
chr1	16933749	A	G	0.00764	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr4	103718454	T	A	0.00446	LOC102723704,UBE2D3	+,-	FALSE
chr2	37330476	T	C	2.74271E-05		.	FALSE	AluSq2	SINE,Alu
chr1	89887603	C	T	0.00308	GBP1P1	+	FALSE
chr6	74134744	T	C	0.00214		.	FALSE	AluSz	SINE,Alu
chr6	150046495	T	C	0.00076	NUP43	-	TRUE	AluSq2	SINE,Alu
chr19	19792288	A	G	0.00379	ZNF101	+	TRUE	AluJb	SINE,Alu
chr1	16889413	T	C	0.00016	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	179852074	T	C	0.00033	TOR1AIP1	+	FALSE
chr5	179020622	T	C	2.11448E-05	RUFY1	+	FALSE
chr2	55516937	G	T	0.00250	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	16344402	G	A	0.00168	HSPB7	-	FALSE	L3	SINE,Alu
chr4	39550570	T	C	0.00203	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr7	75045694	C	T	1.64957E-05	NSUN5P1	+	FALSE
chr1	53289940	A	G	7.75582E-06	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	53711218	A	T	0.00838	LRP8	-	FALSE
chr4	13606576	A	T	0.00737	BOD1L1	-	FALSE
chr10	13320126	T	A	0.00830	PHYH	-	FALSE
chr12	53435627	A	G	0.00010	EIF4B	+	FALSE
chr1	145688664	A	T	0.00679	NBPF20,NBPF10,RNF115	+	FALSE
chr2	88913273	G	C	0.00152	EIF2AK3	-	FALSE
chr1	16945452	C	T	0.00184	CROCCP2	-	FALSE
chr5	151041883	G	A	0.00343	SPARC	-	FALSE
chr1	144931727	G	A	0.00521	NBPF20,PDE4DIP	+,-	FALSE
chr1	143399383	T	A	0.00198		.	FALSE	L1MC4	SINE,Alu
chr2	24224134	A	G	0.00333		.	FALSE	AluSp	SINE,Alu
chr3	195393406	C	T	0.00690	SDHAP2	+	FALSE
chr15	41590973	A	G	1.61675E-06	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr1	179326847	A	G	0.00031	SOAT1	+	TRUE	AluJo	SINE,Alu
chr1	28836974	A	G	9.88453E-07	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr17	45761110	G	T	0.00816		.	FALSE
chr2	86251114	T	C	0.00150		.	FALSE	AluSx	SINE,Alu
chr3	88205579	G	T	2.47620E-05	C3orf38	+	FALSE
chr9	131093963	A	G	0.00299	COQ4	+	TRUE	AluJo	SINE,Alu
chr2	160624383	A	T	0.00142	MARCH7	+	FALSE
chr6	109001948	G	A	0.00030	FOXO3	+	FALSE	(A)n	SINE,Alu
chr9	125609940	T	A	0.00044		.	FALSE
chr11	33694645	T	C	2.61039E-05	KIAA1549L	+	FALSE
chr3	100083423	T	C	0.00678	TOMM70	-	FALSE	FAM	SINE,Alu
chr1	1595034	T	C	2.36116E-07	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr2	54014303	A	G	0.00901	GPR75-ASB3,ERLEC1	+,-	FALSE
chr1	19934879	T	C	0.00454	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr1	9160976	T	C	0.00015		.	FALSE	AluJb	SINE,Alu
chr3	196670090	G	A	6.78352E-09	NCBP2-AS2	+	FALSE
chr4	761850	T	C	0.00026	PCGF3	+	FALSE
chr15	90820073	A	G	0.00012		.	FALSE	AluY	SINE,Alu
chr12	44181367	G	A	0.00608	IRAK4	+	FALSE	MLT1E1A	SINE,Alu
chr1	32801745	A	G	0.00357	MARCKSL1	-	FALSE
chr19	21367088	A	G	0.00018	ZNF431	+	TRUE	AluSc	SINE,Alu
chr10	101992783	T	C	0.00313	CWF19L1	-	TRUE	AluJb	SINE,Alu
chr3	15113847	T	C	0.00026	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	28662213	A	G	0.00013	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	56961756	A	G	0.00263	PLPP3	-	FALSE
chr1	10517992	T	C	0.00417		.	FALSE	AluJr	SINE,Alu
chr10	61548859	A	C	0.00011	CCDC6	-	FALSE
chr1	988503	A	T	8.91206E-06	AGRN	+	FALSE
chr8	17089564	T	C	0.00165	CNOT7	-	FALSE
chrX	3526659	C	G	0.00188	PRKX	-	FALSE	(AC)n	SINE,Alu
chr1	203766872	G	A	1.42518E-06	ZC3H11A,ZBED6	+	FALSE
chr1	142688511	T	C	0.00089		.	FALSE
chr1	33148365	G	C	0.00062	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	143135063	C	A	0.00397	LOC102723769	-	FALSE
chr1	10042988	A	G	3.32241E-06	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr3	98517013	T	C	1.12976E-12	DCBLD2	-	FALSE
chr3	122283287	T	C	8.96368E-06	DTX3L,PARP9	+,-	FALSE
chr1	19543352	T	C	0.00087	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	8930561	T	G	0.00913	ENO1	-	FALSE
chr8	23290112	T	C	0.00121	ENTPD4	-	TRUE	AluY	SINE,Alu
chr2	37328013	T	C	1.05952E-05		.	FALSE
chr1	28661692	A	G	2.56757E-06	MED18	+	TRUE	AluSg	SINE,Alu
chr1	67874849	T	C	7.36358E-05	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	177976440	C	T	0.00148	LOC730102	-	FALSE
chr2	203741640	T	C	0.00419		.	FALSE	AluJr	SINE,Alu
chr4	2940026	T	C	3.38773E-05	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr2	223765491	C	T	0.00689	ACSL3	+	FALSE
chr1	38182333	G	T	0.00063	EPHA10	-	FALSE	L2d2	SINE,Alu
chr1	10521238	T	C	0.00232	DFFA	-	TRUE	AluY	SINE,Alu
chr1	204525548	A	G	0.00027	MDM4	+	TRUE	AluSz	SINE,Alu
chr15	63616881	G	A	0.00026	CA12	-	FALSE
chr1	46075192	A	C	0.00045	NASP	+	FALSE	A-rich	SINE,Alu
chr1	206580231	A	G	0.00100	SRGAP2	+	FALSE
chr3	44485914	T	C	0.00920	ZNF445	-	FALSE	MIRb	SINE,Alu
chr1	16894514	C	T	0.00270	NBPF1	-	FALSE
chr9	131457039	C	T	0.00148	SET	+	FALSE
chr1	36068231	T	C	9.19439E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr5	68858545	C	G	0.00268	GTF2H2C,GTF2H2C_2	+	FALSE	AluSz	SINE,Alu
chr1	40306898	T	C	9.21891E-07	TRIT1	-	FALSE
chr1	1252662	T	C	0.00235	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr1	242251696	C	T	0.00335	PLD5	-	FALSE
chr5	130537747	A	G	1.40133E-05	LYRM7	+	TRUE	AluJb	SINE,Alu
chr1	6477671	G	T	0.00620	HES2	-	FALSE	AluSx	SINE,Alu
chr10	13320123	C	A	0.00830	PHYH	-	FALSE
chr1	1721936	G	A	0.00731	GNB1	-	FALSE
chr9	33039686	G	A	0.00542	DNAJA1	+	FALSE
chr1	26143725	A	T	0.00116	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	24128467	C	T	0.00481	HMGCL	-	FALSE
chr4	170017406	A	T	0.00534	SH3RF1	-	FALSE
chrX	23721458	T	A	0.00413		.	FALSE	AluSc8	SINE,Alu
chr1	47767914	G	A	0.00636	STIL	-	FALSE
chr4	68483513	G	A	3.54156E-05	UBA6	-	FALSE
chr2	152976703	T	A	0.00217	STAM2	-	FALSE
chr1	67874252	C	A	0.00558	SERBP1	-	FALSE
chr16	4810507	G	A	0.00021	ZNF500	-	FALSE
chr17	4928416	A	G	0.00941	KIF1C	+	TRUE	AluSz	SINE,Alu
chr11	125526125	A	G	0.00374	CHEK1	+	TRUE	FRAM	SINE,Alu
chr1	53712215	G	T	0.00458	LRP8	-	FALSE
chr2	198416724	A	T	0.00378	HSPE1-MOB4,MOB4	+	FALSE
chr3	195963500	C	T	0.00014		.	FALSE
chr4	2940477	T	C	1.61307E-05	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chrM	9988	T	C	0.00011		.	FALSE
chr17	76799795	G	A	0.00363	USP36	-	FALSE
chr13	46700519	C	A	0.00089	LCP1	-	FALSE
chr5	32586597	G	C	0.00970	SUB1	+	FALSE
chr1	10518688	T	C	0.00341		.	FALSE	AluSx1	SINE,Alu
chr2	37075013	T	A	0.00119	STRN	-	FALSE
chr8	133859871	T	A	0.00027	PHF20L1	+	FALSE
chr1	6475348	C	A	4.73725E-05	HES2	-	FALSE	Tigger1	SINE,Alu
chr16	48386295	A	G	4.77364E-05	LONP2,MIR5095	+	TRUE	AluSz6	SINE,Alu
chr1	100550370	T	A	0.00731	SASS6	-	FALSE
chr19	21273765	A	G	0.00253	ZNF714	+	FALSE	AluSc	SINE,Alu
chr1	35644502	A	T	0.00702	SFPQ	-	FALSE	(A)n	SINE,Alu
chr1	144932151	G	T	0.00294	NBPF20,PDE4DIP	+,-	FALSE
chr19	19793795	A	G	0.00030	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr15	93198678	T	C	0.00064	FAM174B	-	FALSE	(GCCGCT)n	SINE,Alu
chr15	90627429	T	C	0.00013	IDH2	-	FALSE
chr7	29962666	T	A	0.00077	SCRN1	-	FALSE
chr1	206566904	T	C	0.00084	SRGAP2	+	FALSE
chr1	27202960	T	C	0.00213		.	FALSE	AluSq2	SINE,Alu
chr3	122283293	C	G	0.00071	DTX3L,PARP9	+,-	FALSE
chr1	3545183	A	T	0.00347	TPRG1L	+	FALSE
chr10	77157784	C	T	0.00027	ZNF503	-	FALSE	(T)n	SINE,Alu
chr5	92956173	C	T	0.00646	FAM172A	-	FALSE
chr1	14106404	G	C	0.00156	PRDM2	+	FALSE
chrX	77083941	T	C	0.00271	MAGT1	-	TRUE	AluSz	SINE,Alu
chr15	32820819	T	G	0.00718	WHAMMP1	-	FALSE
chr1	32373837	G	T	0.00681	PTP4A2	-	FALSE	(T)n	SINE,Alu
chr1	151846854	T	G	0.00626	THEM4	-	FALSE	AluSx	SINE,Alu
chr1	24862643	T	G	0.00933	RCAN3	+	FALSE
chr1	214529247	T	C	0.00233	PTPN14	-	TRUE
chr1	10044272	A	G	0.00737	NMNAT1	+	TRUE	AluSx1	SINE,Alu
chr2	37329300	T	C	0.00925		.	FALSE	AluJr4	SINE,Alu
chr1	144053664	A	C	0.00050		.	FALSE
chr10	79793877	C	T	0.00977	RPS24	+	FALSE
chr6	109001947	A	G	0.00359	FOXO3	+	FALSE	(A)n	SINE,Alu
chr2	37328008	T	C	0.00733		.	FALSE
chr1	86852621	A	G	0.00930	ODF2L	-	FALSE
chr2	206981835	T	C	0.00047		.	FALSE	AluJb	SINE,Alu
chr3	195243023	A	C	0.00729	PPP1R2	-	FALSE
chr1	36690599	A	G	0.00406	THRAP3	+	FALSE
chr1	61922437	G	T	0.00359	NFIA	+	FALSE
chr1	16892275	C	T	0.00087	NBPF1	-	FALSE
chr16	75479910	T	C	0.00026	TMEM170A	-	TRUE	AluSg4	SINE,Alu
chr1	1421186	C	T	0.00834	ATAD3B	+	FALSE
chr2	20449068	A	G	0.00014	PUM2	-	FALSE
chr1	16893691	C	A	0.00764	NBPF1	-	FALSE
chr3	123332546	C	G	0.00964	MYLK-AS1,MYLK	+,-	FALSE
chr1	45975358	A	G	0.00807	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	234744480	G	A	0.00237	IRF2BP2	-	FALSE
chr1	28662186	A	G	8.22643E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr20	35521049	G	A	0.00711	TLDC2,SAMHD1	+,-	FALSE
chr8	48890247	A	G	2.58682E-14	MCM4	+	TRUE	AluJb	SINE,Alu
chr1	53680205	C	T	4.54902E-05	C1orf123	-	FALSE
chr1	36067925	T	C	0.00397	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	197128726	G	A	2.50329E-05	ZBTB41	-	FALSE
chr2	65496144	A	G	0.00883	ACTR2	+	FALSE
chr1	53291420	A	G	0.00011	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	6583270	C	G	0.00026	NOL9	-	FALSE
chr1	10517567	T	C	0.00262		.	FALSE	AluSx1	SINE,Alu
chr1	23408939	T	A	1.04314E-06	KDM1A	+	FALSE
chr1	46829013	A	G	0.00360	NSUN4	+	FALSE
chr1	120164545	T	G	0.00058	ZNF697	-	FALSE
chr1	19984100	G	C	0.00037	MINOS1-NBL1,NBL1	+	FALSE
chr1	144828707	G	T	0.00504	NBPF20,NBPF9	+	FALSE
chr1	16889413	T	C	1.64789E-05	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	145511962	A	G	0.00091	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	109818161	C	T	0.00382	CELSR2	+	FALSE
chr1	33149496	A	G	0.00469	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr3	10193797	A	G	0.00199	VHL	+	TRUE	AluSx	SINE,Alu
chr1	118066459	A	G	0.00360	MAN1A2	+	FALSE
chr13	30084952	G	A	0.00045	SLC7A1	-	FALSE
chr1	54636689	A	G	0.00268		.	FALSE
chr14	70838368	T	C	0.00561	SYNJ2BP-COX16,SYNJ2BP	-	TRUE	AluSg	SINE,Alu
chr3	10356760	G	A	0.00951	SEC13	-	FALSE	MIRb	SINE,Alu
chr1	54231850	T	A	0.00681	NDC1	-	FALSE
chrX	54587196	A	G	0.00392	GNL3L	+	TRUE	AluSq2	SINE,Alu
chr2	101622884	C	A	0.00387	RPL31	+	FALSE
chr2	198339559	G	T	0.00712	COQ10B	+	FALSE
chr2	17942775	T	A	0.00367	GEN1	+	FALSE
chr7	44917405	C	T	0.00024	PURB	-	FALSE	AluSz	SINE,Alu
chr1	39794147	A	C	9.03176E-05	MACF1	+	FALSE
chr1	145323668	G	C	0.00241	NBPF20,NBPF10	+	FALSE
chr1	180169330	C	T	0.00015	FLJ23867	+	FALSE	MIR	SINE,Alu
chr1	230416038	G	A	0.00626	GALNT2	+	FALSE
chr1	220232144	T	C	1.06602E-07	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	144930596	C	A	0.00103	NBPF20,PDE4DIP	+,-	FALSE
chr7	127947979	T	C	0.00257		.	FALSE	AluJr	SINE,Alu
chr1	120165040	T	C	0.00195	ZNF697	-	FALSE
chr3	195242996	C	A	0.00136	PPP1R2	-	FALSE
chr6	42048128	G	T	0.00604	TAF8	+	FALSE	AluSq2	SINE,Alu
chr4	71685846	A	T	0.00465	GRSF1	-	FALSE
chr1	1469787	C	T	0.00010	ATAD3A	+	FALSE
chr1	110170896	T	C	0.00140	AMPD2	+	FALSE
chr3	156258283	T	C	0.00071	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	19586360	T	C	0.00023	MRTO4	+	FALSE
chr1	146650916	C	T	0.00025	PDIA3P1	+	FALSE
chr1	67874696	T	C	0.00014	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr5	174956497	C	T	0.00487	SFXN1	+	FALSE
chr3	69151152	C	A	0.00750	ARL6IP5	+	FALSE
chr1	11783889	A	G	0.00746		.	FALSE	AluSq	SINE,Alu
chr7	17384334	A	G	0.00013	AHR	+	TRUE	AluSx	SINE,Alu
chr4	139966801	A	G	0.00282	NOCT	+	TRUE	AluYj4	SINE,Alu
chr2	102484488	A	G	0.00192	MAP4K4	+	FALSE
chr2	37331750	T	C	0.00067		.	FALSE	AluJb	SINE,Alu
chr3	49762662	G	T	6.99764E-06	IP6K1	-	FALSE
chr2	217366590	A	G	0.00013		.	FALSE	AluSz	SINE,Alu
chr2	174090321	C	A	0.00563	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr17	49042381	T	C	0.00931	SPAG9	-	TRUE	AluJb	SINE,Alu
chr1	145273345	T	C	0.00190	NBPF20,NOTCH2NL	+	FALSE
chr15	65442602	T	C	8.94083E-05	CLPX	-	TRUE	AluSg4	SINE,Alu
chr3	98304403	G	A	0.00997	CPOX	-	FALSE
chr12	98942690	A	G	3.03569E-06	TMPO	+	TRUE	AluSc	SINE,Alu
chr2	47562582	G	A	0.00484	LOC101927043	-	FALSE	BC200	SINE,Alu
chr1	120612006	G	A	0.00602	NOTCH2	-	FALSE
chr1	36067886	T	C	1.98907E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr4	17803537	T	C	7.44979E-05	DCAF16	-	TRUE	AluY	SINE,Alu
chr19	58371837	A	G	0.00329	ZNF587	+	TRUE	AluSz	SINE,Alu
chr1	33145989	A	T	0.00548	SYNC,RBBP4	+,-	FALSE
chr1	145509569	A	G	0.00777	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu

RBP	TRIM28
Knock-Method	CRISPRi
RBP Family	Non-canonical_RBP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR591QYK
Platform	HiSeq
Pubmed ID	32252787

TRIM28 - Target Gene Network