RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr4	25279508	G	A	3.42130E-11	PI4K2B	+	FALSE
chr14	31916782	T	C	4.67250E-05	LOC101927124,DTD2	+,-	FALSE	AluSc8	SINE,Alu
chr1	16112795	A	G	4.56234E-06	FBLIM1	+	FALSE
chr1	115259341	A	C	2.70927E-07	NRAS	-	FALSE
chr1	53359181	A	G	0.00699	ZYG11A	+	TRUE	AluSx	SINE,Alu
chr1	158631171	A	C	0.00815	SPTA1	-	FALSE
chr1	182568729	C	G	0.00012	RGS16	-	FALSE
chr9	80888613	A	G	0.00904		.	FALSE	AluSx	SINE,Alu
chr1	27202963	C	T	0.00106		.	FALSE	AluSq2	SINE,Alu
chr1	1421186	C	T	0.00834	ATAD3B	+	FALSE
chr1	179852074	T	C	0.00338	TOR1AIP1	+	FALSE
chr1	1666834	G	A	0.00037	SLC35E2	-	FALSE	L1MEg	SINE,Alu
chr1	31732603	A	C	0.00148	SNRNP40	-	FALSE
chr1	145284883	A	G	0.00329	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr3	101405563	A	G	0.00511	RPL24	-	FALSE
chr1	148003749	T	C	0.00114	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr4	5830393	C	T	0.00220	CRMP1	-	FALSE
chr1	10518591	A	T	0.00545		.	FALSE
chr1	183218870	G	T	0.00338	NMNAT2	-	FALSE
chr3	191114266	T	C	0.00258	CCDC50	+	FALSE
chr5	149363392	A	G	0.00531	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr5	41919747	C	T	0.00814	C5orf51	+	FALSE	L2c	SINE,Alu
chr4	38945689	C	T	1.01800E-05	FAM114A1	+	FALSE	AluSc	SINE,Alu
chr3	49395695	A	C	0.00159	GPX1	-	FALSE
chr1	145512024	A	G	0.00247	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	9162933	C	T	0.00088		.	FALSE
chr1	11084103	T	A	0.00146	TARDBP	+	FALSE
chr5	125962528	A	G	0.00924	PHAX	+	TRUE	AluSz	SINE,Alu
chr7	65619243	A	G	9.04168E-05	CRCP	+	TRUE	AluSz6	SINE,Alu
chr2	37328034	T	C	0.00380		.	FALSE
chr1	45975574	A	G	0.00890	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	113455441	C	A	0.00020	SLC16A1	-	FALSE	(A)n	SINE,Alu
chr6	150047423	T	C	0.00688	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	91990445	A	G	5.21972E-05	CDC7	+	FALSE	LFSINE_Vert	SINE,Alu
chr1	150448374	T	A	0.00607	RPRD2	+	FALSE
chr1	40537944	C	A	0.00371	CAP1	+	FALSE
chr2	201676441	G	A	0.00140	LOC101927795,BZW1	+,-	FALSE
chr7	100739267	G	A	0.00654		.	FALSE	AluSx	SINE,Alu
chr4	124237063	A	G	0.00876	SPATA5	+	TRUE	AluJr	SINE,Alu
chr17	1684352	T	C	0.00793	SMYD4	-	TRUE	AluSx1	SINE,Alu
chr1	78414329	G	A	0.00635	FUBP1	-	FALSE	A-rich	SINE,Alu
chr1	6694226	C	T	0.00742	THAP3	+	FALSE
chr4	39551975	T	C	5.31269E-07	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr10	75009781	T	C	9.15447E-06	DNAJC9-AS1,MRPS16	+,-	FALSE	AluY	SINE,Alu
chr1	41326886	C	G	0.00085	CITED4	-	FALSE
chr2	127826533	A	G	0.00942	BIN1	-	FALSE
chr10	82192266	A	G	0.00391	FAM213A	+	TRUE	AluSx1	SINE,Alu
chr3	32567573	G	A	0.00320	DYNC1LI1	-	FALSE	(AT)n	SINE,Alu
chr1	9160975	T	C	0.00347		.	FALSE	AluJb	SINE,Alu
chr1	16912099	G	C	0.00450	NBPF1	-	FALSE
chr1	203771852	G	T	0.00883	ZC3H11A	+	FALSE	(T)n	SINE,Alu
chr2	192699639	A	G	0.00017	SDPR	-	FALSE
chr1	65298791	A	T	0.00242	RAVER2	+	FALSE
chr14	50053315	G	A	0.00150		.	FALSE	7SLRNA	SINE,Alu
chr1	24798068	C	A	0.00686	NIPAL3	+	FALSE	AluJr	SINE,Alu
chr7	4809089	A	G	0.00552	FOXK1	+	TRUE	AluSx1	SINE,Alu
chr17	1486543	G	C	0.00452	SLC43A2	-	FALSE
chr1	227845283	C	A	0.00809	ZNF678	+	FALSE
chr1	95362514	G	T	0.00279	CNN3	-	FALSE
chr4	119952955	C	T	0.00278	SYNPO2	+	FALSE
chr8	17796338	G	T	4.50000E-10	PCM1	+	FALSE
chr3	195963397	G	A	0.00037		.	FALSE
chr1	1231173	C	T	1.33148E-07	ACAP3	-	FALSE
chr4	152020782	C	T	0.00989	RPS3A	+	FALSE
chr1	2336210	C	T	0.00509	RER1	+	FALSE
chr1	24798089	G	A	0.00815	NIPAL3	+	FALSE
chr1	10520532	T	C	0.00142		.	FALSE	AluSx1	SINE,Alu
chr1	31905906	T	A	0.00092	SERINC2	+	FALSE
chr1	143399333	T	A	0.00339		.	FALSE	L1MC4	SINE,Alu
chr4	165996789	T	C	0.00939		.	FALSE	AluSg4	SINE,Alu
chr1	114306374	G	A	0.00124	RSBN1	-	FALSE
chr2	217366197	T	A	0.00018		.	FALSE
chr1	1622754	A	G	0.00221	CDK11B,SLC35E2B	-	FALSE	MLT1F2	SINE,Alu
chr4	2940486	T	C	7.87098E-05	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr17	73886212	T	C	0.00724	TRIM65	-	TRUE	FRAM	SINE,Alu
chr1	25570562	T	A	0.00028	RSRP1	-	FALSE	Alu	SINE,Alu
chr1	144833405	C	A	0.00345	NBPF20	+	FALSE	L1MEc	SINE,Alu
chr14	24661020	C	T	0.00504	TM9SF1	-	FALSE	AluJb	SINE,Alu
chr11	68523338	T	C	0.00817	CPT1A	-	TRUE	AluSq	SINE,Alu
chr1	1595006	T	C	0.00156	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	15899345	T	C	0.00300	AGMAT	-	TRUE	AluSx3	SINE,Alu
chr1	1650797	A	G	0.00798	CDK11B,CDK11A	-	FALSE
chr3	112299732	A	G	0.00189	SLC35A5	+	FALSE
chr2	73460299	G	C	0.00180	PRADC1	-	FALSE	(CGGCGC)n	SINE,Alu
chr1	175914284	A	G	0.00036	RFWD2	-	FALSE
chr1	29519736	T	C	0.00610	MECR	-	TRUE	AluJb	SINE,Alu
chr10	73994158	A	G	0.00110	ANAPC16	+	TRUE	AluJr	SINE,Alu
chr2	136541072	T	C	0.00496	UBXN4	+	FALSE
chr17	61502458	T	A	0.00317	TANC2	+	FALSE
chr5	180663940	A	G	0.00331	RACK1	-	FALSE
chr17	78091513	G	A	0.00810	GAA	+	FALSE
chr1	11089869	A	G	0.00839	MASP2	-	FALSE	AluSp	SINE,Alu
chr19	42375549	A	G	4.56329E-05		.	FALSE	AluSx	SINE,Alu
chr6	44417159	A	G	0.00959	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr10	102308803	G	C	0.00324	HIF1AN	+	FALSE	(GT)n	SINE,Alu
chr3	33481400	G	C	1.12603E-05	UBP1	-	FALSE
chr7	138730361	T	C	0.00316	ZC3HAV1	-	FALSE	L2-1_AMi	SINE,Alu
chr7	129472333	C	T	0.00670	UBE2H	-	FALSE	(CA)n	SINE,Alu
chr1	46075720	A	G	0.00105	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	68168152	C	T	0.00258	GNG12	-	FALSE
chr6	25600772	A	G	0.00269	CARMIL1	+	FALSE
chr21	34728175	A	G	6.62284E-07	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr2	37329261	T	C	0.00123		.	FALSE	AluJr4	SINE,Alu
chr1	212277616	C	T	0.00248	DTL	+	FALSE
chr7	127941334	C	T	0.00440	MGC27345	-	FALSE	MIR3	SINE,Alu
chr1	40219280	T	C	8.82951E-05	PPIE	+	FALSE
chr1	52253845	T	C	0.00889	OSBPL9	+	FALSE	(AT)n	SINE,Alu
chr1	36770065	C	T	0.00131	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	45110404	C	T	0.00230	RNF220	+	FALSE
chr2	71411975	A	C	0.00463	PAIP2B	-	FALSE
chr1	19984461	C	T	0.00090	MINOS1-NBL1,NBL1	+	FALSE
chr4	128756738	A	G	0.00408		.	FALSE	AluSx	SINE,Alu
chr19	18476176	A	G	0.00452	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr1	46827871	G	A	0.00014	NSUN4	+	FALSE
chr1	114443618	A	G	0.00910	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	10520331	C	T	0.00060		.	FALSE	AluSx1	SINE,Alu
chr8	27632073	T	G	0.00013	ESCO2	+	FALSE
chr1	19542310	T	C	0.00510	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr11	8707395	C	A	9.51875E-07	RPL27A	+	FALSE
chr1	6582425	T	C	0.00039	NOL9	-	TRUE	AluSx1	SINE,Alu
chr1	212277581	C	T	4.20326E-05	DTL	+	FALSE
chr1	144014068	T	C	0.00118		.	FALSE
chr1	28566320	T	C	0.00309		.	FALSE	AluSx1	SINE,Alu
chr4	5710647	A	G	5.78692E-06	EVC2	-	FALSE
chr1	94343023	A	G	0.00363	DNTTIP2	-	FALSE
chr19	58356524	A	G	0.00026	ZNF587B	+	TRUE	AluSx	SINE,Alu
chr5	65453894	T	A	0.00211	SREK1	+	FALSE
chr6	134492482	A	C	0.00108	SGK1	-	FALSE
chr1	11347155	C	T	0.00366	UBIAD1	+	FALSE
chr6	160526905	C	A	0.00268	IGF2R	+	FALSE
chr2	61277443	A	G	0.00362	PEX13	+	TRUE	AluSx	SINE,Alu
chr17	74555106	T	C	0.00164	SNHG16	+	FALSE
chr2	187544230	T	A	0.00930	ITGAV	+	FALSE
chr1	1650832	A	G	0.00407	CDK11B,CDK11A	-	FALSE
chr1	16890598	T	A	0.00375	NBPF1	-	FALSE
chr1	53708530	T	C	9.40494E-05	LRP8	-	FALSE	(TA)n	SINE,Alu
chr2	234203547	T	C	0.00476	ATG16L1	+	FALSE
chr1	138266	C	T	0.00802	LOC729737	-	FALSE
chr3	191111160	A	G	4.43846E-07	CCDC50	+	FALSE
chr19	9672989	T	C	0.00044		.	FALSE	AluSx3	SINE,Alu
chr3	48787118	T	C	0.00359	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	53291435	A	G	0.00790	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr3	193334991	G	A	0.00473	OPA1	+	FALSE
chr1	11710798	T	G	0.00328	FBXO2	-	FALSE	(CCT)n	SINE,Alu
chr1	95362514	G	T	0.00658	CNN3	-	FALSE
chr1	10519951	T	C	0.00378		.	FALSE	AluJr	SINE,Alu
chr3	53263333	G	A	0.00329	TKT	-	FALSE
chr3	73117835	C	T	2.08399E-05	PPP4R2	+	FALSE
chr1	45244413	T	A	0.00750		.	FALSE
chr1	16933631	G	A	0.00927	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	16889639	T	C	0.00350	NBPF1	-	TRUE
chr3	148748257	C	G	0.00989	HLTF	-	FALSE
chr1	6282361	T	C	0.00634	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	21070971	G	A	0.00944	HP1BP3	-	FALSE
chr1	53708528	T	C	0.00057	LRP8	-	FALSE	(TA)n	SINE,Alu
chr1	1337736	C	G	0.00012	MRPL20	-	FALSE
chr1	19542679	T	C	0.00575	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr1	68167217	G	T	0.00036	GNG12	-	FALSE
chr1	16889414	T	C	0.00858	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr5	37291482	T	C	0.00146		.	FALSE	AluSx3	SINE,Alu
chr16	24807247	G	A	0.00417	TNRC6A	+	FALSE
chr6	31324705	A	C	0.00179		.	FALSE
chr2	58316814	A	G	0.00257	VRK2	+	FALSE
chr4	40138676	A	G	0.00157	N4BP2	+	FALSE
chr14	74526154	T	C	0.00030	BBOF1,ALDH6A1	+,-	FALSE	AluSp	SINE,Alu
chr1	16576295	G	A	0.00231	FBXO42	-	FALSE	A-rich	SINE,Alu
chr1	53288862	A	G	0.00155	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	23240255	G	A	0.00873	EPHB2	+	FALSE
chr16	10623543	T	C	0.00025	EMP2	-	TRUE	AluSp	SINE,Alu
chr19	16661431	T	C	0.00017	SLC35E1	-	TRUE	AluSz	SINE,Alu
chr6	42857028	A	G	0.00064	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	109240641	T	A	0.00090	PRPF38B	+	FALSE
chr2	37330435	T	C	0.00401		.	FALSE	AluSq2	SINE,Alu
chr1	183187603	C	T	0.00357	LAMC2	+	FALSE
chr1	32373858	A	T	0.00100	PTP4A2	-	FALSE
chr1	32799510	T	G	0.00048	MARCKSL1	-	FALSE
chr20	25427756	A	G	0.00396	GINS1	+	TRUE	AluSz	SINE,Alu
chr4	56295161	T	A	0.00075	CLOCK	-	FALSE	(T)n	SINE,Alu
chr3	44790781	T	C	0.00060	KIAA1143	-	TRUE	AluY	SINE,Alu
chr1	40537941	A	C	0.00216	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	206566195	C	T	0.00706	SRGAP2	+	FALSE
chr2	72403405	A	C	0.00227	EXOC6B	-	FALSE	GA-rich	SINE,Alu
chr1	116609833	G	A	0.00012	SLC22A15	+	FALSE
chr1	47903063	G	C	0.00292	FOXD2	+	FALSE
chr3	98307696	T	G	3.25383E-09	CPOX	-	FALSE
chr1	3745924	G	A	0.00612	CEP104	-	FALSE
chr2	37872508	G	A	5.12140E-05	CDC42EP3	-	FALSE
chr2	174090331	A	C	0.00901	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr2	204055626	G	T	0.00130	NBEAL1	+	FALSE
chr11	62557871	G	C	0.00273	TMEM179B,TMEM223	+,-	FALSE
chr1	68167935	A	G	0.00390	GNG12	-	FALSE
chr1	119574537	G	A	0.00935	WARS2	-	FALSE
chr16	10624953	T	C	0.00056	EMP2	-	TRUE	AluSx3	SINE,Alu
chr14	70838268	T	C	0.00365	SYNJ2BP-COX16,SYNJ2BP	-	TRUE	AluSg	SINE,Alu
chr1	20978024	C	A	0.00175	PINK1-AS	-	FALSE
chr17	42113064	A	G	0.00014	LSM12	-	FALSE	(A)n	SINE,Alu
chr7	29962586	G	A	0.00051	SCRN1	-	FALSE
chr3	47036756	C	G	0.00091	NBEAL2	+	FALSE
chr1	146740502	C	G	0.00692	CHD1L	+	FALSE
chr1	16889563	C	A	0.00090	NBPF1	-	FALSE
chr1	28800380	C	A	0.00186	PHACTR4	+	FALSE
chr9	137332311	T	G	0.00036	RXRA	+	FALSE
chr1	51822219	G	A	0.00017	EPS15	-	FALSE
chr1	16889413	T	C	8.21040E-06	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr3	45960557	C	T	1.72644E-06	FYCO1	-	FALSE
chr1	19984100	G	C	0.00563	MINOS1-NBL1,NBL1	+	FALSE
chr1	3654747	C	A	0.00691	TP73-AS1	-	FALSE
chr14	74431191	A	G	0.00670	ENTPD5	-	FALSE

RBP	PABPC4
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR455VZH
Platform	HiSeq
Pubmed ID	32252787

PABPC4 - Target Gene Network