RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr5	150578574	A	G	0.00447	CCDC69	-	FALSE
chr6	111591610	A	G	0.00105		.	FALSE	FLAM_A	SINE,Alu
chr3	63996262	C	T	0.00681	PSMD6-AS2,PSMD6	+,-	FALSE
chr8	26435509	T	C	0.00121	DPYSL2	+	FALSE	(TC)n	SINE,Alu
chr7	55433880	G	C	0.00115	LANCL2	+	FALSE
chr3	40503557	T	C	0.00746	RPL14	+	FALSE
chr3	57542173	C	T	0.00020	PDE12	+	FALSE
chr19	11560461	A	G	0.00034	PRKCSH	+	TRUE	AluSx	SINE,Alu
chr15	60678712	G	A	0.00801	ANXA2	-	FALSE
chr6	160113872	A	G	0.00863	SOD2	-	FALSE
chr1	36068184	T	C	0.00177	PSMB2	-	TRUE	AluSc	SINE,Alu
chr12	133389998	T	C	0.00829	GOLGA3	-	FALSE
chr5	37290400	T	C	0.00085		.	FALSE	AluSz	SINE,Alu
chr1	161141432	C	G	0.00508	B4GALT3	-	FALSE
chr10	22824829	T	C	0.00207	PIP4K2A	-	FALSE
chr12	120898553	A	G	0.00233	GATC	+	TRUE	AluY	SINE,Alu
chr1	95658344	G	A	0.00100	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr1	9162929	C	G	0.00584		.	FALSE
chr1	146495577	T	A	0.00072	LOC728989	-	FALSE
chr8	48890288	A	G	0.00210	MCM4	+	TRUE	AluJb	SINE,Alu
chrX	77083673	T	C	0.00090	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr15	52203664	A	C	0.01000	TMOD3	+	FALSE
chr1	16929327	C	T	0.00315	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr3	69154343	C	G	0.00408	ARL6IP5	+	FALSE
chr2	32534897	A	G	0.00111		.	FALSE	AluSx1	SINE,Alu
chr8	143763618	C	G	0.00421	PSCA	+	FALSE
chr7	120740103	G	T	0.00601	CPED1	+	FALSE
chr3	188597556	A	G	0.00309	LPP	+	FALSE
chr7	66105198	C	A	0.00456	KCTD7	+	FALSE
chr1	10517659	T	C	0.00679		.	FALSE	AluSx1	SINE,Alu
chr9	125866691	A	C	0.00177	RABGAP1	+	FALSE
chr3	15114395	T	C	0.00333	RBSN	-	TRUE	AluY	SINE,Alu
chr2	204162277	A	G	0.00097	CYP20A1	+	TRUE	AluSx	SINE,Alu
chr5	52388458	A	T	0.00152	ITGA2	+	FALSE
chr2	216908679	C	T	0.00988	PECR	-	FALSE
chr1	15736752	G	A	0.00170	EFHD2	+	FALSE
chr1	1469546	G	A	0.00766	ATAD3A	+	FALSE
chr1	9163290	T	C	0.00016		.	FALSE	AluSp	SINE,Alu
chr1	16889866	G	A	0.00051	NBPF1	-	FALSE
chr3	183476685	G	A	0.00032	YEATS2	+	FALSE
chr7	6066461	T	C	2.08606E-05	EIF2AK1	-	FALSE
chr1	233514975	G	T	0.00584	MLK4	+	FALSE
chr1	146627405	C	G	0.00074	PRKAB2	-	FALSE
chr1	15668319	G	A	0.00489	FHAD1	+	FALSE
chr4	3242100	G	A	0.00916	HTT	+	FALSE
chr14	75202402	A	G	0.00141	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	205739266	C	T	0.00069	RAB29	-	FALSE
chr1	33148210	A	G	0.00114	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	168220489	A	G	0.00126		.	FALSE	AluSz6	SINE,Alu
chr1	11783889	A	G	0.00746		.	FALSE	AluSq	SINE,Alu
chr3	57549504	A	G	0.00384	PDE12	+	TRUE	AluJb	SINE,Alu
chr1	182569318	G	T	0.00101	RGS16	-	FALSE
chr3	44790781	T	C	0.00887	KIAA1143	-	TRUE	AluY	SINE,Alu
chr1	31732599	T	G	0.00827	SNRNP40	-	FALSE
chr14	36784095	C	T	0.00866	MBIP	-	FALSE
chr1	150281017	A	G	0.00057	MRPS21	+	TRUE	AluSz	SINE,Alu
chr7	6501830	G	A	0.00217	KDELR2	-	FALSE
chr1	6283264	T	C	0.00095	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	33149375	A	G	0.00840	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	53711735	G	C	0.00884	LRP8	-	FALSE
chr1	17345246	A	T	0.00812	SDHB	-	FALSE
chr2	86249961	T	C	0.00368	LOC90784	-	TRUE	AluJr	SINE,Alu
chr1	204525669	A	G	0.00169	MDM4	+	TRUE	AluSz	SINE,Alu
chr2	178186556	G	A	0.00917	LOC100130691	-	FALSE
chr3	101369192	C	T	0.00761	ZBTB11	-	FALSE
chr1	36322433	G	A	0.00663	AGO4	+	FALSE
chr1	46077218	A	G	0.00543	NASP	+	TRUE	AluSc8	SINE,Alu
chr1	52816674	T	C	1.79626E-07	CC2D1B	-	TRUE	AluSx1	SINE,Alu
chr4	73922978	T	C	0.00079	COX18	-	TRUE	AluSz	SINE,Alu
chr9	89627066	A	G	0.00588	LOC440173	-	FALSE
chr6	150047376	T	C	0.00306	NUP43	-	TRUE	AluSc	SINE,Alu
chr2	99812450	A	G	7.07141E-05	MRPL30	+	TRUE	AluSx	SINE,Alu
chr3	119212009	G	A	0.00241	POGLUT1	+	FALSE
chr17	4929000	A	G	0.00214	KIF1C	+	TRUE	AluY	SINE,Alu
chr9	19373161	A	G	0.00647	DENND4C	+	TRUE	MADE1	SINE,Alu
chr2	187544230	T	A	0.00930	ITGAV	+	FALSE
chr1	150208462	A	C	9.89925E-05	ANP32E	-	FALSE
chr6	149912555	G	A	0.00551		.	FALSE
chr1	145441843	G	A	0.00744	NBPF20,NBPF10,TXNIP	+	FALSE
chr1	104097685	C	T	0.00721	RNPC3,AMY2B	+	FALSE
chr2	114352179	G	A	1.68965E-05	WASH2P	+	FALSE
chr21	34728113	A	G	0.00531	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr1	3546132	G	A	0.00113	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr6	42854681	A	G	0.00011	RPL7L1	+	TRUE	AluSc	SINE,Alu
chr1	53291425	A	G	0.00517	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	145513114	A	G	0.00033	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr10	12292344	A	G	0.00434	CDC123	+	FALSE
chr5	32586387	T	C	0.00569	SUB1	+	FALSE
chr14	74526154	T	C	0.00030	BBOF1,ALDH6A1	+,-	FALSE	AluSp	SINE,Alu
chr1	90470915	T	A	9.94810E-07	ZNF326	+	FALSE
chr19	21366997	A	G	0.00727	ZNF431	+	TRUE	AluSc	SINE,Alu
chr1	47142539	T	A	0.00066	EFCAB14-AS1,EFCAB14	+,-	FALSE
chr1	75196073	C	T	0.00159	CRYZ	-	FALSE
chr1	160990876	C	A	1.09997E-06	F11R	-	FALSE
chr1	6582527	T	C	0.00139	NOL9	-	TRUE	AluSx1	SINE,Alu
chr1	148251009	T	C	0.00065	NBPF8,NBPF14,NBPF9	-	TRUE
chr1	93827764	A	G	0.00098	DR1	+	FALSE
chr2	3504687	A	G	0.00755	ADI1	-	FALSE
chr1	156499969	T	C	8.53229E-06	IQGAP3	-	FALSE
chr15	52202957	G	T	0.00094	TMOD3	+	FALSE	(T)n	SINE,Alu
chr1	90493918	G	A	0.00166	ZNF326	+	FALSE
chr3	44487862	G	A	0.00262	ZNF445	-	FALSE
chr2	70452146	T	G	0.00192	TIA1	-	FALSE
chr3	121435624	C	T	0.00063	GOLGB1	-	FALSE
chrX	118672561	T	C	2.49155E-08	CXorf56	-	TRUE	AluSx	SINE,Alu
chr1	10521254	T	C	2.63330E-05	DFFA	-	TRUE	AluY	SINE,Alu
chr1	40923019	G	A	0.00019	ZFP69B	+	FALSE
chr1	20826788	A	T	6.12716E-05	MUL1	-	FALSE
chr7	24731065	C	T	0.00414	MPP6	+	FALSE	(TGTATG)n	SINE,Alu
chr5	139931630	A	T	0.00052	SRA1	-	FALSE
chr1	118068699	C	G	0.00191		.	FALSE
chr1	3545192	C	G	0.00011	TPRG1L	+	FALSE
chr15	41590288	G	T	0.00349	OIP5-AS1	+	FALSE
chr15	85190470	G	T	8.70862E-05	WDR73	-	FALSE
chr1	33148196	A	G	0.00303	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	19542310	T	C	0.00510	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	149582019	A	G	0.00082	LINC00623,LINC00869,LOC103091866	+	FALSE
chr2	197004439	A	G	0.00034	STK17B	-	FALSE
chr1	43272841	A	T	0.00029	SVBP	-	FALSE
chr3	112320485	T	C	0.00107	LINC01279	-	TRUE	AluJb	SINE,Alu
chr1	79003523	C	G	0.00036	PTGFR	+	FALSE
chr1	120163247	T	C	0.00010	ZNF697	-	FALSE
chr1	144868170	C	T	0.00750	NBPF20,PDE4DIP	+,-	FALSE
chr2	76672504	A	G	0.00010		.	FALSE	7SK	SINE,Alu
chr2	128620373	C	T	0.00553	AMMECR1L	-	FALSE
chr1	116235277	C	T	0.00396	VANGL1	+	FALSE
chr14	21928940	T	C	0.00212	RAB2B	-	TRUE	AluSp	SINE,Alu
chr1	145116141	G	A	0.00266	NBPF20,SEC22B	+	FALSE
chr1	28261662	A	G	0.01000	SMPDL3B	+	FALSE
chr1	67874270	G	A	0.00019	SERBP1	-	FALSE
chr1	46076599	A	G	0.00116	NASP	+	TRUE	AluSx	SINE,Alu
chr1	144851537	A	G	0.00275	NBPF20,PDE4DIP	+,-	FALSE
chr2	85548075	C	A	0.00932	TGOLN2	-	FALSE
chr1	40214261	A	G	0.00879	PPIE	+	TRUE	AluSq2	SINE,Alu
chr1	36068196	T	C	0.00376	PSMB2	-	TRUE	AluSc	SINE,Alu
chr15	39887848	G	A	0.00664	THBS1	+	FALSE
chr1	16112795	A	G	0.00145	FBLIM1	+	FALSE
chr1	45975498	A	G	0.00018	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	54691921	G	A	0.00010	SSBP3	-	FALSE
chr1	16160968	C	T	0.00524	FLJ37453	-	FALSE	(T)n	SINE,Alu
chr1	19543799	T	C	0.00076	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr2	24223251	A	G	0.00489	UBXN2A	+	TRUE	AluSc	SINE,Alu
chrX	54587218	A	G	0.00014	GNL3L	+	TRUE	AluSq2	SINE,Alu
chr1	26608019	T	A	3.63623E-05		.	FALSE
chr3	49397323	T	C	0.00000	RHOA	-	TRUE
chr9	114696428	G	T	0.00163	UGCG	+	FALSE	(TGTTTTT)n	SINE,Alu
chr1	145281408	C	T	0.00220	NBPF20,NOTCH2NL	+	FALSE
chr1	16912099	G	C	0.00450	NBPF1	-	FALSE
chr12	56510704	G	A	0.00042	RPL41	+	FALSE
chr20	35409839	T	C	0.00556	SOGA1	-	TRUE	AluSx	SINE,Alu
chr1	65692499	C	T	0.00235	AK4	+	FALSE	(T)n	SINE,Alu
chr6	42855972	A	G	3.93003E-05	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr4	39551179	T	C	0.00142	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr15	90820083	A	G	4.07036E-06		.	FALSE	AluY	SINE,Alu
chr1	28836912	A	G	3.63020E-05	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr6	57034840	T	G	0.00581	ZNF451,LOC101927211	+,-	FALSE
chr7	66421684	T	G	0.00042	TMEM248	+	FALSE	AluJr	SINE,Alu
chr3	10192672	G	A	5.82875E-07	VHL	+	FALSE	AluSx1	SINE,Alu
chr9	133579734	A	G	0.00129	EXOSC2	+	TRUE	AluSx3	SINE,Alu
chr1	1252443	T	C	0.00392	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr2	198368110	C	A	0.00053	HSPE1,HSPE1-MOB4	+	FALSE
chr2	75120159	C	T	0.00180	HK2	+	FALSE
chr1	1662694	T	C	0.00398	SLC35E2	-	TRUE	AluY	SINE,Alu
chr16	84778690	C	T	0.00799	USP10	+	FALSE
chr19	19791650	A	G	1.64958E-05	ZNF101	+	TRUE	AluSc	SINE,Alu
chr2	37331065	T	C	0.00585		.	FALSE	AluSx1	SINE,Alu
chr11	35017260	T	C	0.00224	PDHX	+	FALSE
chr1	205577901	G	A	0.00904	ELK4	-	FALSE
chr15	90820171	A	G	0.00185		.	FALSE
chr1	109465168	T	A	0.00246	GPSM2	+	FALSE
chr1	211920314	T	C	0.00938	LPGAT1	-	FALSE
chr1	16890421	G	A	0.00024	NBPF1	-	FALSE
chr1	9331227	A	G	0.00181	H6PD	+	TRUE	AluSx	SINE,Alu
chr13	100638107	A	T	0.00841	ZIC2	+	FALSE
chr4	17802956	T	C	0.00480	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	10042937	A	G	2.41028E-05	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	6283439	T	C	0.00786	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	32953296	A	G	5.26589E-05	ZBTB8B	+	TRUE	AluSz	SINE,Alu
chr1	54354935	G	C	0.00831	YIPF1	-	FALSE
chr4	10076658	T	C	6.66134E-16	WDR1	-	FALSE
chr1	16929327	C	T	5.08143E-05	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr3	101579158	A	G	0.00022	NFKBIZ	+	FALSE	AluJo	SINE,Alu
chr6	31657413	T	C	0.00066		.	FALSE
chr1	10518756	T	C	0.00937		.	FALSE	AluSx1	SINE,Alu
chr4	52888499	G	A	8.91315E-05	SGCB	-	FALSE
chr2	91805928	T	C	0.00000		.	FALSE	MLT1H1	SINE,Alu
chr1	52306079	T	A	0.00606	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr3	141164940	C	A	0.00194	ZBTB38	+	FALSE
chr1	97144750	T	C	0.00262		.	FALSE
chr3	20025662	T	G	0.00028	RAB5A,PP2D1	+,-	FALSE
chr1	12401868	A	C	0.00394	VPS13D	+	FALSE
chr11	86646405	C	A	9.05139E-05	PRSS23	+	FALSE	L2b	SINE,Alu
chr1	36067833	T	C	3.75622E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr5	145666109	A	T	0.00728	RBM27	+	FALSE
chr3	30733403	A	T	0.00840	TGFBR2	+	FALSE	(TA)n	SINE,Alu
chr17	5288078	A	G	0.00081	RABEP1	+	FALSE
chr1	224380498	A	G	6.58460E-05	DEGS1	+	TRUE	AluSx	SINE,Alu
chr17	28963296	A	G	0.00572	LOC107133515	+	TRUE	AluJr4	SINE,Alu
chr19	19791270	A	G	0.00732	ZNF101	+	TRUE	AluSq2	SINE,Alu
chr1	116235186	A	G	0.00054	VANGL1	+	FALSE
chr2	99813003	A	G	2.46688E-05	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	94351065	A	T	0.00142	GCLM	-	FALSE
chr1	12071680	A	G	5.54475E-07	MFN2	+	FALSE
chr6	52267967	A	C	0.00424	PAQR8	+	FALSE
chr1	200375404	T	G	0.00030	ZNF281	-	FALSE
chr1	36031860	G	T	0.00564	NCDN	+	FALSE
chr1	26799971	T	A	0.00713	HMGN2	+	FALSE
chr3	40578997	A	G	0.00094	ZNF621	+	TRUE	AluJr	SINE,Alu
chr1	10520649	T	C	0.00629	DFFA	-	TRUE	AluSc8	SINE,Alu
chr5	130494984	A	T	0.00018	HINT1	-	FALSE
chr5	6633042	C	T	0.00377	NSUN2	-	FALSE
chr1	77759578	A	G	0.00955	AK5	+	FALSE
chr1	156044222	G	T	0.00037	MEX3A	-	FALSE	(T)n	SINE,Alu
chr7	2290637	C	T	0.00956	NUDT1	+	FALSE
chr2	73460299	G	C	0.00180	PRADC1	-	FALSE	(CGGCGC)n	SINE,Alu
chr1	145323656	A	T	3.43611E-06	NBPF20,NBPF10	+	FALSE
chr1	1594835	C	G	0.00195	CDK11B,SLC35E2B	-	FALSE
chr1	38279666	C	T	0.00521	MTF1	-	FALSE	(T)n	SINE,Alu
chr1	45975348	T	C	0.00062	MMACHC	+	FALSE	AluSg7	SINE,Alu
chr1	179829093	T	C	0.00056	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr1	1593857	T	C	0.00217	CDK11B,SLC35E2B	-	FALSE
chr3	172115474	A	G	0.00012	FNDC3B	+	FALSE	(A)n	SINE,Alu
chr1	38275432	G	T	0.00057	MTF1	-	FALSE
chr1	16841561	G	A	0.00025		.	FALSE
chr2	37518045	G	C	0.00342	PRKD3	-	FALSE
chr17	61502459	T	A	0.00161	TANC2	+	FALSE
chr4	2940371	T	C	0.00150	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr4	153898334	A	G	0.00662	FHDC1	+	FALSE	AluJo	SINE,Alu
chr7	64023437	A	G	0.00073	ZNF680	-	FALSE
chr1	93308168	T	A	0.00314	FAM69A	-	FALSE
chr2	20449068	A	G	0.00014	PUM2	-	FALSE
chr2	206986978	T	C	0.00159		.	FALSE	AluJr	SINE,Alu
chr1	45975498	A	G	0.00064	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	153917621	G	C	0.00020	DENND4B	-	FALSE
chr2	128602455	T	C	0.00632		.	FALSE	AluSq2	SINE,Alu
chr11	118940957	C	G	0.00642	VPS11	+	FALSE
chr2	207174868	G	A	1.60070E-05	ZDBF2	+	FALSE
chr3	195963400	T	G	0.00155		.	FALSE
chr2	99812464	A	G	1.88485E-05	MRPL30	+	TRUE	AluSx	SINE,Alu
chr1	16841972	G	A	1.76809E-05		.	FALSE	MER41E	SINE,Alu
chr1	10043358	A	G	0.00982	NMNAT1	+	TRUE	AluSx3	SINE,Alu
chr1	12677549	T	A	1.84464E-05	DHRS3	-	FALSE	(A)n	SINE,Alu
chr2	127826533	A	G	0.00942	BIN1	-	FALSE
chr3	33909024	A	T	0.00134	PDCD6IP	+	FALSE
chr1	145499276	C	T	0.00581	NBPF20,NBPF10,LIX1L	+	FALSE
chr1	168220427	A	G	0.00670		.	FALSE	AluSz6	SINE,Alu
chr1	89518173	T	A	0.00465	GBP1	-	FALSE
chr20	25428617	A	G	0.00622	GINS1	+	FALSE	AluJb	SINE,Alu
chr1	16893691	C	A	0.00371	NBPF1	-	FALSE
chr1	36531942	A	G	0.00042		.	FALSE	AluSq2	SINE,Alu
chr2	272203	C	T	1.58440E-08	ACP1	+	FALSE
chr2	37328013	T	C	0.00401		.	FALSE
chr1	9328255	A	G	0.00729	H6PD	+	TRUE	AluJr	SINE,Alu
chr5	125962169	A	G	0.00013	PHAX	+	TRUE	AluSc	SINE,Alu
chr1	10520174	T	C	0.00163		.	FALSE	AluSx	SINE,Alu
chr19	57816261	A	G	0.00156		.	FALSE	AluY	SINE,Alu
chr4	108834529	G	T	1.01126E-06	SGMS2,LOC101929595	+,-	FALSE
chr20	43707842	A	G	0.00100	STK4	+	TRUE	AluJb	SINE,Alu
chr1	14150116	C	T	7.82303E-05	PRDM2	+	FALSE
chr7	128143606	A	G	4.95106E-06		.	FALSE	AluJr4	SINE,Alu
chr1	153782688	G	T	0.00032	GATAD2B	-	FALSE
chr2	128620436	C	T	0.00342	AMMECR1L	-	FALSE
chr1	101443701	A	G	0.00749	SLC30A7	+	FALSE
chr10	28971535	T	A	0.00169	BAMBI	+	FALSE
chr1	145509569	A	G	0.00777	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr5	180669695	T	C	0.00101	RACK1	-	TRUE	AluSx1	SINE,Alu
chr1	32799435	A	T	0.00515	MARCKSL1	-	FALSE
chr1	113240711	G	A	0.00454	MOV10	+	FALSE
chr1	36067677	T	C	5.01583E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	64327544	G	T	0.00340	PELI1	-	FALSE
chr7	25161424	T	C	0.00669	CYCS	-	TRUE	AluSz6	SINE,Alu
chr16	67715404	T	C	0.00102	GFOD2	-	TRUE	AluSz	SINE,Alu

RBP	KHSRP
Knock-Method	shRNA
RBP Family	KH_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR561CBC
Platform	HiSeq
Pubmed ID	32252787

KHSRP - Target Gene Network