Dataset Overview
RBP
RBM25
Knock-Method
shRNA
RBP Family
PWI
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR610AEI
Platform
HiSeq
Pubmed ID
32252787
RBM25 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of RBM25
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
40.38
28.52
-0.70653
6.06386E-13
5.50751E-12
A2M
2827.98
1995.24
-0.62776
9.54632E-14
9.48642E-13
AAAS
21.26
21.18
-0.26914
0.00935
0.01793
AACS
17.52
11.63
-0.69853
7.25290E-13
6.51907E-12
AADAC
0.87
1.25
0.53418
0.04751
0.07681
AAGAB
4.83
6.8
0.51078
6.36328E-05
0.00019
AAK1
1.2
3.48
1.62477
2.26755E-22
5.24971E-21
AAMDC
27.35
19.29
-0.54654
0.00021
0.00057
AAMP
124.44
101.44
-0.45905
1.81291E-08
9.44485E-08
AAR2
22.2
13.74
-0.80252
9.42171E-17
1.29218E-15
Showing 1 to 10 of 8,078 entries
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Function Analysis of Target Genes of RBM25
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCA5
67247887_67248007_67246612_67246762_67249713_67249808
0.00436
0.226
DataSet_01_401
View details
ABCC2
101579193_101579299_101578845_101579026_101590063_101590190
0.00312
-0.031
DataSet_01_401
View details
ABCC2
101579184_101579299_101578845_101579026_101590063_101590190
0.00444
-0.034
DataSet_01_401
View details
ABI2
204276007_204276094_204267298_204267457_204281630_204281804
0.00763
-0.137
DataSet_01_401
View details
ACAA1
38167652_38167843_38167316_38167372_38168000_38168191
0.00215
0.052
DataSet_01_401
View details
ACAA1
38167652_38167832_38167316_38167372_38168000_38168191
0.00281
0.035
DataSet_01_401
View details
ADRM1
60879516_60879633_60878623_60878837_60881252_60881376
0.00002
0.06
DataSet_01_401
View details
ADRM1
60883423_60883526_60883076_60883234_60883710_60883918
0.00149
0.037
DataSet_01_401
View details
AFMID
76200736_76200822_76198783_76198832_76200908_76200981
0.00143
0.166
DataSet_01_401
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AGFG1
228401616_228401709_228401340_228401420_228416674_228416833
0.00601
-0.519
DataSet_01_401
View details
Showing 1 to 10 of 297 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC2
101579193_101579299_101581647_101581836_101578845_101579026
0.00612
-0.224
DataSet_01_401
View details
ACP1
272036_272150_272191_272305_271865_271939
0.00115
-0.092
DataSet_01_401
View details
AFP
74306318_74306530_74309067_74309161_74303842_74304023
0.00000
-0.118
DataSet_01_401
View details
AGAP1
236817381_236817550_236839408_236839567_236792038_236792093
0.00837
0.09
DataSet_01_401
View details
AHSG
186334975_186335139_186337645_186337729_186334231_186334316
0.00163
0.069
DataSet_01_401
View details
AHSG
186336079_186336280_186336324_186336426_186334975_186335139
0.00177
-0.009
DataSet_01_401
View details
AHSG
186333473_186333584_186334231_186334316_186330873_186331143
0.00179
-0.083
DataSet_01_401
View details
AHSG
186336324_186336426_186337645_186337729_186334972_186335139
0.00256
0.068
DataSet_01_401
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ALB
74272345_74272478_74274310_74274522_74270832_74270890
0.00000
0.174
DataSet_01_401
View details
AMT
49458924_49459005_49459536_49459704_49457643_49457775
0.00166
0.209
DataSet_01_401
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Showing 1 to 10 of 149 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC6P1
18584198_18584419_18584198_18584382_18585641_18585757
0.00038
0.536
DataSet_01_401
View details
ACAA1
38167652_38168191_38168000_38168191_38167316_38167372
0.00244
0.052
DataSet_01_401
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ACOT9
23724735_23724974_23724744_23724974_23723884_23723975
0.00240
0.252
DataSet_01_401
View details
AP2M1
183900544_183900743_183900544_183900656_183901269_183901450
0.00417
0.076
DataSet_01_401
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ARHGAP26
142586762_142587038_142586762_142586873_142593561_142593653
0.00852
-0.234
DataSet_01_401
View details
ARL6IP6
153574427_153575538_153574427_153574633_153577046_153577100
0.00084
-0.666
DataSet_01_401
View details
ATG4B
242590424_242590750_242590424_242590526_242592926_242593117
0.00311
-0.109
DataSet_01_401
View details
ATP1B3
141640818_141640983_141640818_141640905_141644372_141645356
0.00226
0.066
DataSet_01_401
View details
BCL2L2-PABPN1
23793374_23793537_23793374_23793498_23794455_23794578
0.00280
0.096
DataSet_01_401
View details
CANX
179125906_179126103_179125906_179126050_179132679_179132863
0.00010
-0.106
DataSet_01_401
View details
Showing 1 to 10 of 38 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACSL4
108926364_108926604_108926364_108926601_108939372_108939425
0.00592
0.176
DataSet_01_401
View details
AKT2
40741169_40741374_40741169_40741257_40741796_40742035
0.00215
0.06
DataSet_01_401
View details
APOA2
161192707_161193056_161192707_161192784_161193139_161193215
0.00001
-0.047
DataSet_01_401
View details
APOA2
161192707_161192840_161192707_161192784_161193139_161193215
0.00006
-0.015
DataSet_01_401
View details
APOA2
161192707_161192814_161192707_161192784_161193139_161193215
0.00237
-0.085
DataSet_01_401
View details
ASGR1
7081812_7081990_7081812_7081907_7082508_7082883
0.00067
0.041
DataSet_01_401
View details
ASGR1
7081812_7081990_7081812_7081952_7082508_7082883
0.00092
0.188
DataSet_01_401
View details
ASGR1
7081812_7081990_7081812_7081918_7082508_7082883
0.00202
0.06
DataSet_01_401
View details
ASGR1
7081812_7081930_7081812_7081907_7082508_7082883
0.00689
0.02
DataSet_01_401
View details
ASGR2
7017435_7017717_7017435_7017629_7017933_7018161
0.00029
-0.11
DataSet_01_401
View details
Showing 1 to 10 of 46 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCB6
220075102_220075545_220075102_220075197_220075432_220075545
0.00820
0.058
DataSet_01_401
View details
ACAA1
38167316_38168191_38167316_38167372_38168000_38168191
0.00071
0.257
DataSet_01_401
View details
ACADVL
7127131_7127388_7127131_7127194_7127286_7127388
0.00019
0.029
DataSet_01_401
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ACADVL
7127968_7128203_7127968_7128033_7128127_7128203
0.00425
0.054
DataSet_01_401
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AJUBA
23444047_23444279_23444047_23444099_23444182_23444279
0.00881
0.077
DataSet_01_401
View details
AKR1C1
5009118_5010578_5009118_5009235_5010500_5010578
0.00012
0.012
DataSet_01_401
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AKR1C2
5041391_5042858_5041391_5041469_5042741_5042858
0.00026
0.067
DataSet_01_401
View details
ANKZF1
220100731_220101373_220100731_220100817_220101043_220101373
0.00407
0.047
DataSet_01_401
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AP3D1
2109084_2109957_2109084_2109206_2109871_2109957
0.00329
0.071
DataSet_01_401
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ASPSCR1
79974675_79974989_79974675_79974745_79974816_79974989
0.00408
0.051
DataSet_01_401
View details
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
155214017
C
A
0.00946
GBA
-
FALSE
AluSx3
SINE,Alu
chr1
53679610
G
A
0.00119
CPT2
+
FALSE
AluSz
SINE,Alu
chr1
145689491
A
G
0.00701
NBPF20,NBPF10
+
TRUE
AluSg
SINE,Alu
chr1
145512925
A
G
0.00238
NBPF20,NBPF10,RBM8A,GNRHR2
+,-
FALSE
AluSz6
SINE,Alu
chr1
53291395
A
G
0.00323
ZYG11B
+
TRUE
AluJr
SINE,Alu
chr1
19953120
G
A
0.00027
MINOS1,MINOS1-NBL1
+
FALSE
chr1
109475543
A
G
0.00495
GPSM2,CLCC1
+,-
FALSE
AluJo
SINE,Alu
chr1
160967816
T
C
0.00162
F11R
-
TRUE
AluSp
SINE,Alu
chr1
160967899
T
C
0.00011
F11R
-
TRUE
AluSp
SINE,Alu
chr1
27107950
G
A
0.00249
ARID1A
+
FALSE
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression