RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	36534736	A	G	0.00016		.	FALSE	AluJo	SINE,Alu
chr11	76733946	A	G	0.00725	ACER3	+	FALSE	A-rich	SINE,Alu
chr14	74526976	T	C	0.00469	BBOF1,ALDH6A1	+,-	FALSE	AluJo	SINE,Alu
chr1	145512073	A	G	0.00285	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr10	1086810	T	A	0.00245	IDI2-AS1,IDI1	+,-	FALSE
chr2	203430456	T	G	0.00162	BMPR2	+	FALSE
chr5	177019207	T	G	0.00584	TMED9	+	FALSE
chr2	204301754	C	G	0.00012	RAPH1	-	FALSE
chr1	46521559	A	T	0.00177	PIK3R3	-	FALSE
chr1	10518831	T	C	0.00213		.	FALSE	AluSx1	SINE,Alu
chr1	16927419	G	A	0.00493	NBPF1	-	FALSE
chr7	6501820	A	T	0.00531	KDELR2	-	FALSE
chr10	63852210	C	T	0.00324	ARID5B	+	FALSE
chr1	36068237	T	C	0.00291	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	208620129	A	G	0.00061	CCNYL1	+	TRUE	EutTc1-N1	SINE,Alu
chr1	92977228	T	C	0.00206	EVI5	-	TRUE	AluJr	SINE,Alu
chr1	118472382	G	T	0.00029	WDR3	+	FALSE
chr1	145284883	A	G	0.00062	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr1	17313654	C	T	0.00886	ATP13A2	-	FALSE
chr1	2520435	G	C	0.00041	FAM213B	+	FALSE
chr1	26774224	A	G	0.00295	DHDDS	+	TRUE	AluSz6	SINE,Alu
chrX	3526613	C	T	0.00930	PRKX	-	FALSE
chr3	45722381	A	G	0.00996	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr1	145513098	A	G	0.00171	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	39470979	C	A	0.00160	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr2	130900880	C	T	0.00044	CCDC74B	-	FALSE
chr1	144833382	C	T	0.00325	NBPF20	+	FALSE	L1MEc	SINE,Alu
chr17	55761035	G	A	0.00125	MSI2	+	FALSE
chr1	26608009	T	A	0.00496	SH3BGRL3	+	FALSE
chr19	19793168	A	G	0.00481	ZNF101	+	TRUE	AluSz	SINE,Alu
chr1	6282371	T	C	0.00054	ICMT	-	TRUE	AluSz	SINE,Alu
chr3	150345451	A	G	2.37481E-05	SELT	+	TRUE
chr5	177019196	G	C	0.00509	TMED9	+	FALSE	(GCG)n	SINE,Alu
chr1	207247477	T	C	0.00078	PFKFB2	+	FALSE	MER5B	SINE,Alu
chr2	44459528	G	A	0.00126	PPM1B	+	FALSE
chr2	10942687	C	T	0.00082	PDIA6	-	FALSE
chr1	6583138	T	C	0.00010	NOL9	-	TRUE	AluSx4	SINE,Alu
chr2	9629306	G	T	0.00255	ADAM17	-	FALSE
chr1	8045340	C	A	0.00217	PARK7	+	FALSE
chr5	34906156	T	C	2.52494E-05	RAD1	-	TRUE	AluSx1	SINE,Alu
chr1	36794250	A	G	0.00324		.	FALSE	AluJb	SINE,Alu
chr6	138734422	C	T	0.00447	HEBP2	+	FALSE
chr3	39452945	T	A	0.00462	RPSA	+	FALSE	MER5B	SINE,Alu
chr1	153609268	G	A	0.00263	CHTOP	+	FALSE
chr5	85916592	G	A	0.00018		.	FALSE
chr2	8823956	A	G	2.51922E-06	ID2	+	FALSE
chr1	108113839	T	C	1.78857E-05	VAV3	-	FALSE
chr16	80636805	T	G	0.00766	CDYL2	-	FALSE
chr1	145500925	T	A	0.00997	NBPF20,NBPF10,LIX1L	+	FALSE
chr3	15483019	G	T	0.00751	EAF1	+	FALSE
chr5	70503890	A	T	0.00188		.	FALSE
chr1	47843356	A	T	0.00556	CMPK1	+	FALSE
chr1	16912029	C	G	0.00699	NBPF1	-	FALSE
chrX	77083673	T	C	0.00090	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr11	93474585	T	G	0.00531	TAF1D	-	FALSE
chr1	9294903	C	G	0.00353	H6PD	+	FALSE
chr1	92941357	A	G	0.00296	GFI1	-	FALSE
chr1	142805281	C	T	0.00242		.	FALSE
chr1	28661656	A	G	0.00026	MED18	+	TRUE	AluSg	SINE,Alu
chr1	16529004	A	C	3.00007E-07	ARHGEF19	-	FALSE
chr1	145369709	A	G	0.00258	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	10043363	A	G	0.00429	NMNAT1	+	TRUE	AluSx3	SINE,Alu
chr1	16841972	G	A	1.76809E-05		.	FALSE	MER41E	SINE,Alu
chr8	38829839	A	G	0.00184	PLEKHA2	+	TRUE	AluJr4	SINE,Alu
chr1	144917546	A	G	0.00614	NBPF20,PDE4DIP	+,-	FALSE
chr3	196670090	G	A	0.00059	NCBP2-AS2	+	FALSE
chr8	141530799	G	A	0.00525		.	FALSE
chr1	31905886	C	A	0.00335	SERINC2	+	FALSE
chr10	71909957	G	T	0.00853		.	FALSE
chr1	16893686	G	C	0.00171	NBPF1	-	FALSE
chr17	57281058	A	G	0.00061	PRR11	+	TRUE	AluSz	SINE,Alu
chr1	160966353	T	C	0.00011	F11R	-	TRUE	AluSg	SINE,Alu
chr3	14986098	T	C	3.23580E-05	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr2	74686329	C	T	0.00640	INO80B-WBP1,WBP1	+	FALSE
chr1	19586458	A	G	1.61978E-09	MRTO4	+	TRUE	AluSz	SINE,Alu
chr3	122283290	G	C	0.00029	DTX3L,PARP9	+,-	FALSE
chr2	242176182	G	A	2.43141E-09	HDLBP	-	FALSE
chr20	18468404	T	C	0.00301	RBBP9	-	TRUE	AluSz6	SINE,Alu
chr1	19542463	T	C	0.00182	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	52289709	G	C	4.88711E-11	WDR82	-	FALSE	MIR	SINE,Alu
chr2	114220055	T	C	9.23000E-05	CBWD2	+	FALSE
chr6	47501448	T	C	0.00017	CD2AP	+	FALSE
chr2	37330620	T	C	0.00216		.	FALSE	AluSq2	SINE,Alu
chr5	37291446	T	C	6.87884E-05		.	FALSE	AluSx3	SINE,Alu
chr1	6653508	G	A	0.00320	KLHL21	-	FALSE
chr17	65334886	T	C	8.05380E-09	PSMD12	-	TRUE	AluSq	SINE,Alu
chr4	71682341	T	C	0.00584	GRSF1	-	TRUE	AluSz6	SINE,Alu
chr1	36067749	T	C	0.00748	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	36068237	T	C	0.00054	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	40537924	G	A	0.00404	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	10521237	T	C	0.00200	DFFA	-	TRUE	AluY	SINE,Alu
chr5	25415881	T	C	0.00911		.	FALSE
chr5	125962354	A	G	3.71532E-05	PHAX	+	TRUE	AluSc	SINE,Alu
chr1	120164252	G	A	0.00139	ZNF697	-	FALSE
chr1	23689522	G	T	0.00570	ZNF436	-	FALSE
chr6	134492485	C	T	0.00245	SGK1	-	FALSE
chr14	69704553	G	T	7.62587E-05	EXD2	+	FALSE
chr19	1457883	C	G	2.74690E-05	APC2	+	FALSE
chr2	8823941	G	A	0.00053	ID2	+	FALSE
chr1	144599819	C	T	0.00682	NBPF20	+	FALSE
chr3	179117242	T	C	0.00011	GNB4	-	TRUE	AluSz	SINE,Alu
chr1	19585554	A	G	0.00117	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr3	148748339	G	T	0.00666	HLTF	-	FALSE
chr1	94335330	A	T	0.00366	DNTTIP2	-	FALSE
chr16	74655596	T	G	0.00028	RFWD3	-	FALSE	AluSx	SINE,Alu
chr12	1611798	C	T	0.00338	LINC00942	+	FALSE
chr2	201676441	G	A	0.00140	LOC101927795,BZW1	+,-	FALSE
chr2	61764920	C	A	0.00662	XPO1	-	FALSE
chr1	10438006	A	T	6.81521E-05	KIF1B	+	FALSE	AluSg	SINE,Alu
chr13	76378459	T	C	0.00239	LMO7	+	FALSE
chr16	10623553	T	C	0.00024	EMP2	-	TRUE	AluSp	SINE,Alu
chr7	44800040	C	A	0.00565	ZMIZ2	+	FALSE
chr1	19238556	G	A	6.03260E-07	IFFO2	-	FALSE
chr1	19542401	T	C	0.00071	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr19	46053393	T	C	0.00514	OPA3	-	TRUE	AluSx1	SINE,Alu
chr18	47014856	T	A	0.00722	RPL17-C18orf32,RPL17	-	FALSE
chr5	79277950	C	A	0.00037	MTX3	-	FALSE	(AC)n	SINE,Alu
chr1	211836207	T	A	0.00432	NEK2	-	FALSE
chrX	3526615	G	T	0.00820	PRKX	-	FALSE
chr2	32235359	A	C	0.00664	MEMO1	-	FALSE
chr1	206637133	C	T	0.00909	SRGAP2	+	FALSE
chr1	179044242	A	G	0.00335	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	121133392	T	C	0.00651	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr5	149363214	A	G	0.00040	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr19	33470874	A	G	0.00119	RHPN2	-	FALSE
chr1	58999651	T	G	0.00332	OMA1	-	FALSE
chr1	10520331	C	T	0.00060		.	FALSE	AluSx1	SINE,Alu
chr1	1252248	A	G	0.00503	CPSF3L	-	FALSE	AluSx	SINE,Alu
chr10	62554474	T	G	6.65730E-05	CDK1	+	FALSE
chr1	45975358	A	G	0.00089	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	6282315	T	C	0.00508	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	149581866	C	G	0.00774	LINC00623,LINC00869,LOC103091866	+	FALSE	L2b	SINE,Alu
chr1	28261662	A	G	0.01000	SMPDL3B	+	FALSE
chrX	16781186	A	G	0.00220		.	FALSE	AluJo	SINE,Alu
chr1	93308168	T	A	0.00314	FAM69A	-	FALSE
chr3	45748599	T	A	0.00470	SACM1L	+	FALSE
chr16	68962	C	T	0.00852		.	FALSE
chr1	23240263	G	A	5.22984E-05	EPHB2	+	FALSE
chr1	45975670	A	G	0.00530	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	229631734	T	C	0.00611	NUP133	-	FALSE
chr1	6283264	T	C	0.00479	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	1344893	A	G	7.94078E-08		.	FALSE	AluSg	SINE,Alu
chr1	26755291	A	G	0.00044	LIN28A	+	TRUE	AluSx1	SINE,Alu
chr1	1647871	T	C	0.00906	CDK11B,CDK11A	-	FALSE
chr1	205272926	C	T	0.00690	NUAK2	-	FALSE
chr1	38423182	G	C	0.00664	SF3A3	-	FALSE	AluJo	SINE,Alu
chr3	58306802	G	A	4.03384E-05		.	FALSE	AluSz	SINE,Alu
chr2	61277835	A	G	0.00105	PEX13	+	TRUE	AluY	SINE,Alu
chr4	83351845	G	T	0.00422	ENOPH1	+	FALSE
chr5	137891109	C	G	0.00031	HSPA9	-	FALSE
chr1	53291420	A	G	0.00011	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	33149375	A	G	0.00148	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	6257826	T	C	0.00192	RPL22	-	FALSE
chr1	20978324	T	G	0.00153	PINK1-AS,DDOST	-	FALSE	AluY	SINE,Alu
chr4	17803009	T	C	0.00062	DCAF16	-	TRUE	AluSz	SINE,Alu
chr19	19793729	A	G	0.00124	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr4	17628548	A	G	0.00991		.	FALSE	AluSz	SINE,Alu
chr1	53708530	T	C	9.40494E-05	LRP8	-	FALSE	(TA)n	SINE,Alu
chr2	202031806	A	T	0.00543	CFLAR	+	FALSE
chr1	144014068	T	C	0.00029		.	FALSE
chr1	101442570	A	T	0.00377	SLC30A7	+	FALSE
chr2	20648140	A	C	6.93182E-06	RHOB	+	FALSE
chr1	19585493	A	G	3.52757E-05	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr6	44417159	A	G	0.00959	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr1	10517623	T	C	0.00348		.	FALSE	AluSx1	SINE,Alu
chr3	197682718	T	C	0.00163	IQCG,RPL35A	+,-	FALSE
chr1	17735300	C	A	0.00128	RCC2	-	FALSE
chr6	33385535	A	G	0.00671		.	FALSE
chr2	101622884	C	A	0.00387	RPL31	+	FALSE
chr3	10285030	G	A	0.00384	IRAK2	+	FALSE
chr9	96438974	C	G	0.00303	PHF2	+	FALSE	(CTCCAC)n	SINE,Alu
chr1	24128467	C	T	0.00481	HMGCL	-	FALSE
chr3	73116347	T	A	0.00109	PPP4R2	+	FALSE
chr12	123253723	A	G	0.00371	DENR	+	TRUE	(AT)n	SINE,Alu
chr1	41972198	A	T	0.00276	HIVEP3	-	FALSE
chr2	86252198	T	C	0.00076	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr1	42881767	G	C	0.00437	RIMKLA	+	FALSE
chr1	205687213	T	A	0.00950	NUCKS1	-	FALSE
chr1	120839682	A	G	0.00764	FAM72B	+	FALSE
chr1	101443701	A	G	0.00406	SLC30A7	+	FALSE
chr2	180810264	A	T	1.24157E-05	CWC22	-	FALSE
chr2	206980072	G	A	1.35396E-05		.	FALSE	MLT1A1	SINE,Alu
chr1	10517276	T	C	0.00039		.	FALSE	AluJr	SINE,Alu
chr5	170837890	C	A	0.00030		.	FALSE
chr3	10193358	A	G	1.11864E-10	VHL	+	TRUE	L1ME4a	SINE,Alu
chr19	24104018	A	G	0.00543	ZNF726	+	FALSE	AluSg4	SINE,Alu
chr1	1018144	T	C	0.00019	C1orf159	-	FALSE
chr1	145116142	A	T	0.00570	NBPF20,SEC22B	+	FALSE
chr1	44818529	T	C	0.00310	ERI3	-	FALSE
chr1	38327457	T	C	0.00305	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr3	15483744	A	G	0.00083	EAF1	+	FALSE
chr1	19543457	T	C	4.71011E-07	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr12	69237019	A	G	2.84819E-05	MDM2	+	TRUE
chr1	173862270	G	C	0.00197		.	FALSE	AluSz6	SINE,Alu
chr11	118880839	A	G	0.00922	CCDC84	+	TRUE	AluJb	SINE,Alu
chr17	78091513	G	A	0.00810	GAA	+	FALSE
chr17	57279281	A	G	0.00918	PRR11	+	TRUE	AluSq2	SINE,Alu
chr5	122682348	A	G	0.00377	CEP120	-	FALSE
chr1	26755303	A	G	0.00129	LIN28A	+	TRUE	AluSx1	SINE,Alu
chrX	37699364	C	G	0.00695	DYNLT3	-	FALSE
chr1	236717926	T	C	0.00029	HEATR1	-	FALSE
chr5	149823795	A	T	0.00261	RPS14	-	FALSE
chr5	37290435	T	C	8.22232E-07		.	FALSE	AluSz	SINE,Alu
chr1	19543353	T	C	0.00081	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	86364709	G	T	0.00237	PTCD3	+	FALSE
chr6	42047426	A	G	0.00676	TAF8	+	TRUE	AluSz6	SINE,Alu
chr3	195411239	A	C	5.03065E-05	SDHAP2	+	FALSE
chr1	33149496	A	G	0.00308	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	156567496	C	T	0.00012	GPATCH4	-	FALSE	MIR3	SINE,Alu
chr1	36068369	T	C	5.31121E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	144606996	G	C	0.00107	NBPF20	+	FALSE
chr1	24934236	A	G	0.00596	NCMAP	+	TRUE	AluSz6	SINE,Alu
chr8	30643549	G	C	0.00257	PPP2CB	-	FALSE
chr2	189159003	G	A	0.00260	GULP1	+	FALSE
chr1	1337734	C	T	3.46713E-05	MRPL20	-	FALSE
chr1	19543457	T	C	0.00569	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr3	42594019	C	T	3.51223E-05	SEC22C	-	FALSE
chr2	158169499	A	G	0.00119	GALNT5	+	FALSE
chr5	141690819	G	A	0.00062	SPRY4	-	FALSE
chr1	19542631	T	C	0.00198	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr3	156258319	T	C	0.00012	SSR3	-	TRUE	AluYk3	SINE,Alu
chr6	31112484	C	T	0.00538		.	FALSE
chr1	52306082	A	T	0.00038	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr1	1593857	T	C	0.00424	CDK11B,SLC35E2B	-	FALSE
chr1	143189486	A	G	0.00122	LOC102723769	-	FALSE
chr12	125514120	A	G	0.00232		.	FALSE	(TA)n	SINE,Alu
chr3	62282908	C	T	0.00281	PTPRG-AS1	-	FALSE
chr3	44791343	T	C	0.00539	KIAA1143	-	FALSE	AluJr	SINE,Alu
chr2	143638994	G	A	0.00075	KYNU	+	FALSE
chr1	26143725	A	T	0.00116	SEPN1	+	FALSE	AluSx	SINE,Alu
chr3	121351287	A	G	0.00656	HCLS1	-	FALSE
chr1	117617705	A	G	0.00081	TTF2	+	FALSE
chr3	24163645	C	G	1.00972E-05	THRB	-	FALSE
chr1	220231963	T	C	0.00343	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr3	138121198	C	T	0.00076	MRAS	+	FALSE
chr1	143399181	T	G	0.00832		.	FALSE
chr3	18427924	G	T	0.00312	SATB1	-	FALSE
chr1	16913612	G	A	0.00581	NBPF1	-	FALSE
chr4	10443060	T	G	0.00167	ZNF518B	-	FALSE
chrX	150573750	A	T	0.00887	VMA21	+	FALSE

RBP	EIF4G1
Knock-Method	shRNA
RBP Family	MIF4G
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR509LIV
Platform	HiSeq
Pubmed ID	32252787

EIF4G1 - Target Gene Network