RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr14	53243394	T	C	0.00957	GNPNAT1	-	TRUE	AluSx3	SINE,Alu
chr9	131872862	C	G	0.00131	CRAT	-	FALSE
chr1	100657416	C	T	0.00058	DBT	-	FALSE	AluJb	SINE,Alu
chr11	20101744	C	A	0.00540	NAV2	+	FALSE
chr1	32096265	A	G	0.00208	PEF1	-	FALSE
chr10	75009651	T	C	0.00558	DNAJC9-AS1,MRPS16	+,-	FALSE	AluSc	SINE,Alu
chr1	31732677	G	A	0.00030	SNRNP40	-	FALSE	A-rich	SINE,Alu
chr1	179843781	T	C	0.00888	TOR1AIP2	-	TRUE	AluJb	SINE,Alu
chr1	24934236	A	G	0.00596	NCMAP	+	TRUE	AluSz6	SINE,Alu
chr17	77807105	C	A	4.63827E-05	CBX4	-	FALSE
chr1	44088117	G	T	0.00731	PTPRF	+	FALSE	(T)n	SINE,Alu
chr2	197000455	T	C	0.00426	STK17B	-	FALSE	AluSz	SINE,Alu
chr1	204526713	A	G	0.00078	MDM4	+	TRUE	AluSx	SINE,Alu
chr2	198416722	A	T	0.00970	HSPE1-MOB4,MOB4	+	FALSE
chr4	57326291	A	G	0.00415	PAICS	+	TRUE	AluJr	SINE,Alu
chr2	73460315	C	T	0.00315	PRADC1	-	FALSE	(CGGCGC)n	SINE,Alu
chr8	41400022	A	G	0.00148	LOC102723729,GINS4	+,-	FALSE	AluY	SINE,Alu
chr1	36068281	T	C	0.00026	PSMB2	-	TRUE	AluSc	SINE,Alu
chr16	29454288	T	C	9.60363E-06	SMG1P6,BOLA2-SMG1P6	-	FALSE	Tigger4a	SINE,Alu
chr15	78841543	T	A	0.00438	PSMA4	+	FALSE
chr1	144014068	T	C	0.00118		.	FALSE
chr2	86249961	T	C	0.00173	LOC90784	-	TRUE	AluJr	SINE,Alu
chr1	150621090	G	A	0.00212	GOLPH3L	-	FALSE
chr10	47221465	T	C	0.00201		.	FALSE	AluJb	SINE,Alu
chr2	220416967	C	T	0.00300	OBSL1	-	FALSE
chr4	24578019	G	A	0.00000	DHX15	-	FALSE
chr1	226352498	T	G	0.00636	ACBD3	-	FALSE
chr4	17803537	T	C	0.00366	DCAF16	-	TRUE	AluY	SINE,Alu
chr2	128605225	G	A	0.00401	POLR2D	-	FALSE
chr1	35648840	G	T	0.00049	SFPQ	-	FALSE	AluSx3	SINE,Alu
chr1	94703005	C	G	0.00180	ARHGAP29	-	FALSE
chr19	37236432	T	C	0.00333	ZNF850	-	TRUE	AluSp	SINE,Alu
chr1	33148214	A	G	0.00295	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr12	69237509	A	G	1.55617E-05	MDM2	+	TRUE
chr2	171608711	T	A	0.00492	LOC101926913	-	FALSE
chr10	102121601	A	G	0.00000	SCD	+	TRUE	MLT1L	SINE,Alu
chr16	88789702	G	A	0.00125	PIEZO1	-	FALSE
chr1	162752670	G	A	0.00594		.	FALSE
chr19	3467756	C	T	0.00485	NFIC	+	FALSE	(TA)n	SINE,Alu
chr4	84525986	G	T	0.00081	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr1	142688506	T	C	4.54862E-05		.	FALSE
chr12	69237507	A	G	0.00889	MDM2	+	TRUE
chr1	45975345	A	G	9.37661E-05	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	40537944	C	A	2.58277E-05	CAP1	+	FALSE
chr1	40219280	T	C	8.82951E-05	PPIE	+	FALSE
chr1	179084080	T	G	0.00926	ABL2	-	FALSE
chr1	206579936	A	G	0.00424	SRGAP2	+	FALSE
chr3	49051841	C	A	0.00132	WDR6	+	FALSE
chr1	713710	G	C	0.00448	LOC100288069	-	FALSE	FRAM	SINE,Alu
chr1	33148365	G	C	0.00062	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	65692498	T	C	0.00356	AK4	+	FALSE	(T)n	SINE,Alu
chr1	12082926	A	G	0.00594	MIIP	+	FALSE
chr1	110566210	T	A	0.00832	AHCYL1	+	FALSE
chr2	131104524	G	A	0.00912	IMP4	+	FALSE	L1MA9	SINE,Alu
chr1	209605646	A	C	0.00478	MIR205HG	+	FALSE	(AGC)n	SINE,Alu
chr1	38326661	T	C	0.00023	INPP5B	-	TRUE	AluJr	SINE,Alu
chr12	27953267	T	G	0.00233	KLHL42	+	FALSE
chr2	24494671	T	C	0.00244	ITSN2	-	FALSE	(TATCCT)n	SINE,Alu
chr1	162497663	G	A	0.00365	UHMK1	+	FALSE
chr1	210025751	G	A	4.42687E-05	DIEXF	+	FALSE	Tigger4a	SINE,Alu
chr1	40537940	A	C	0.00015	CAP1	+	FALSE	(A)n	SINE,Alu
chr6	13790822	T	C	0.00885	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr1	26606589	C	G	0.00420	SH3BGRL3	+	FALSE
chr4	53364	G	A	0.00714	ZNF718,ZNF595	+	FALSE
chr1	86049390	A	G	0.00918	CYR61	+	FALSE
chr2	101010082	G	C	0.00965	CHST10	-	FALSE
chr1	89447839	C	G	3.35704E-05	KYAT3,RBMXL1	-	FALSE
chr8	61655619	C	T	0.00475	CHD7	+	FALSE
chr16	75479377	T	C	0.00639	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr1	145283718	G	A	0.00897	NBPF20,NOTCH2NL	+	FALSE
chr1	19542631	T	C	0.00176	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr14	74524774	T	C	0.00906	BBOF1,ALDH6A1	+,-	FALSE	AluSc8	SINE,Alu
chr1	85742155	G	A	0.00813	BCL10,LOC646626	+,-	FALSE
chr1	32953214	A	G	0.00837	ZBTB8B	+	TRUE	AluSz	SINE,Alu
chr15	52202957	G	T	0.00094	TMOD3	+	FALSE	(T)n	SINE,Alu
chr1	153521525	G	A	0.00013	LOC101928034,S100A3	+,-	FALSE
chr8	42884422	A	G	0.00768	HOOK3	+	TRUE	AluSc	SINE,Alu
chr1	145303971	A	G	0.00060	NBPF20,NBPF10	+	FALSE
chr12	109039869	T	C	0.00795	CORO1C	-	FALSE
chr1	6283434	T	C	0.00285	ICMT	-	TRUE	AluSx3	SINE,Alu
chr4	190873405	C	T	0.00325	FRG1	+	FALSE
chr1	12072783	C	A	0.00914	MFN2	+	FALSE
chr1	16889563	C	A	0.00090	NBPF1	-	FALSE
chr3	57612623	T	C	3.38108E-06	DENND6A,PDE12	+,-	FALSE
chr4	57327087	A	G	0.00047	PAICS	+	TRUE	AluSx1	SINE,Alu
chr19	46053393	T	C	0.00514	OPA3	-	TRUE	AluSx1	SINE,Alu
chr1	19665566	A	C	0.00028	CAPZB	-	FALSE
chr17	57279258	A	G	0.00095	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	36067886	T	C	0.00925	PSMB2	-	TRUE	AluSz	SINE,Alu
chr6	42981526	C	G	0.00129	MEA1	-	FALSE
chr1	229795330	T	C	0.00334	URB2	+	FALSE
chr16	88789699	A	C	0.00936	PIEZO1	-	FALSE
chr8	41401571	T	A	0.00240	LOC102723729,GINS4	+,-	FALSE
chr1	118068558	G	A	0.00876		.	FALSE
chr1	33086876	T	C	0.00672	ZBTB8OS	-	TRUE	AluY	SINE,Alu
chr7	22983890	T	C	0.00097	FAM126A	-	FALSE
chr2	20424655	G	A	0.00193	SDC1	-	FALSE
chr2	128602507	T	C	4.02376E-05		.	FALSE	AluSq2	SINE,Alu
chr3	58306686	A	G	0.00970		.	FALSE	AluSz	SINE,Alu
chr4	17804847	T	C	0.00512	DCAF16	-	TRUE	AluSx	SINE,Alu
chr2	85776621	T	C	0.00194	GGCX	-	TRUE	AluSz6	SINE,Alu
chr7	152343700	T	C	0.00061	XRCC2	-	TRUE	AluSx3	SINE,Alu
chr19	17535871	A	C	0.00948	MVB12A	+	FALSE
chr1	110136328	T	A	0.00577	GNAI3	+	FALSE
chr1	10517659	T	C	0.00679		.	FALSE	AluSx1	SINE,Alu
chr1	206566904	T	C	0.00322	SRGAP2	+	FALSE
chr19	53155625	T	C	0.00074	ZNF83	-	TRUE	AluSg	SINE,Alu
chr1	89477559	C	T	0.00044	GBP3	-	FALSE
chr3	124948047	C	G	0.00285	ZNF148	-	FALSE
chr1	230461079	G	A	9.74527E-05	PGBD5	-	FALSE
chr5	64964623	T	C	1.14652E-05	SGTB	-	TRUE	AluSx1	SINE,Alu
chr3	15113783	T	C	0.00127	RBSN	-	FALSE	AluSz6	SINE,Alu
chr1	28939803	C	T	1.27013E-09	TAF12	-	FALSE
chr4	57327092	A	G	0.00091	PAICS	+	TRUE	AluSx1	SINE,Alu
chrX	123046598	A	G	0.00371	XIAP	+	TRUE	AluSz	SINE,Alu
chr1	32661600	C	T	0.00235	TXLNA	+	FALSE	(T)n	SINE,Alu
chr1	33148623	A	G	0.00078	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr7	44841237	T	A	0.00599	PPIA	+	FALSE
chr1	150704418	T	C	0.00420	CTSS	-	TRUE	AluJo	SINE,Alu
chr1	10438014	A	C	0.00046	KIF1B	+	FALSE
chr8	30536450	T	C	8.74573E-07	GSR	-	TRUE	AluSp	SINE,Alu
chr2	196600548	G	T	0.00036	SLC39A10	+	FALSE
chr1	26604691	G	C	0.00043	CEP85	+	FALSE
chr1	38174583	A	C	0.00644	CDCA8	+	FALSE
chr2	98388810	G	T	6.24900E-05	TMEM131	-	FALSE
chr1	230979207	C	A	0.00643	C1orf198	-	FALSE
chr1	26143731	A	G	0.00337	SEPN1	+	FALSE	AluSx	SINE,Alu
chr2	69685864	A	C	0.00610	AAK1	-	FALSE	(CA)n	SINE,Alu
chr1	19586135	C	T	0.00063	MRTO4	+	FALSE
chr4	39551018	T	C	0.00224	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr3	17199207	T	A	0.00075	TBC1D5	-	FALSE	A-rich	SINE,Alu
chr9	116022893	C	A	0.00060	SLC31A1	+	FALSE
chr1	207942509	A	G	0.00177	CD46	+	TRUE	AluSg4	SINE,Alu
chr14	74526952	T	C	0.00019	BBOF1,ALDH6A1	+,-	FALSE	AluJo	SINE,Alu
chr6	42856156	A	G	0.00190	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr2	11323276	T	C	0.00219	ROCK2	-	FALSE
chr1	35652608	A	G	0.00026	SFPQ	-	FALSE
chr1	6282237	T	C	0.00372	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	16910172	G	A	0.00085	NBPF1	-	FALSE
chr1	28661657	A	G	0.00011	MED18	+	TRUE	AluSg	SINE,Alu
chr3	44485914	T	C	0.00920	ZNF445	-	FALSE	MIRb	SINE,Alu
chr1	74672474	G	A	0.00441	FPGT-TNNI3K,FPGT	+	FALSE	X12_DNA	SINE,Alu
chr2	10908893	A	G	0.00087	ATP6V1C2	+	FALSE
chr2	74442407	A	G	0.00122	MTHFD2	+	FALSE
chr8	30536015	T	C	6.64592E-05	GSR	-	TRUE	AluJr	SINE,Alu
chr1	153920564	A	G	0.00747	CRTC2	-	FALSE
chr5	52250837	C	T	0.00017		.	FALSE
chr2	191829133	G	A	0.00097	GLS	+	FALSE
chr17	43364293	C	G	0.00144	MAP3K14	-	FALSE
chr14	75202856	A	G	3.12821E-09	FCF1	+	TRUE	AluSx	SINE,Alu
chr4	2940243	T	A	0.00028	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr3	33185036	G	A	0.00573	CRTAP	+	FALSE	L2a	SINE,Alu
chr1	11982580	G	A	2.06927E-05	KIAA2013	-	FALSE
chr9	37503313	A	G	0.00584	POLR1E	+	TRUE	AluJb	SINE,Alu
chr1	55317685	G	A	0.00121	DHCR24	-	FALSE	MIRb	SINE,Alu
chr1	92862862	A	G	0.00024		.	FALSE	AluJr	SINE,Alu
chr2	56150885	G	A	0.00624	EFEMP1	-	FALSE
chr1	46075709	A	G	0.00431	NASP	+	TRUE	AluSx4	SINE,Alu
chr4	17803673	T	C	0.00206	DCAF16	-	TRUE	AluY	SINE,Alu
chr1	10240685	C	T	0.00422	UBE4B	+	FALSE
chr6	96054540	G	T	0.00358	MANEA	+	FALSE
chr16	66923393	A	G	0.00228	PDP2	+	TRUE	AluSz	SINE,Alu
chr2	277314	G	A	0.00867	ACP1	+	FALSE
chr3	196769982	C	G	0.00131	DLG1	-	FALSE
chr2	161130868	A	C	0.00297	RBMS1	-	FALSE
chr6	160100926	T	C	0.00028	SOD2	-	TRUE	AluSz	SINE,Alu
chr2	37328013	T	C	1.05952E-05		.	FALSE
chr15	86288387	C	T	0.00809	AKAP13	+	FALSE
chr3	196079305	T	C	0.00161		.	FALSE	AluSx	SINE,Alu
chr3	138121198	C	T	0.00076	MRAS	+	FALSE
chrX	123046779	A	G	0.00629	XIAP	+	TRUE	AluSz	SINE,Alu
chr6	8014786	T	C	0.00086	BLOC1S5-TXNDC5,BLOC1S5,EEF1E1-BLOC1S5	-	TRUE	AluSz	SINE,Alu
chr3	5258236	G	C	3.37681E-06	EDEM1	+	FALSE
chr17	46024807	C	T	0.00295	PNPO	+	FALSE
chr1	6582701	T	C	1.54245E-05	NOL9	-	TRUE	AluSg	SINE,Alu
chr9	19373160	A	G	0.00404	DENND4C	+	FALSE	MADE1	SINE,Alu
chr1	201488143	A	G	0.00492		.	FALSE	AluSz	SINE,Alu
chr1	36068243	T	C	0.00217	PSMB2	-	TRUE	AluSc	SINE,Alu
chr15	63363384	C	A	0.00161	TPM1	+	FALSE
chr15	41590972	A	G	2.40282E-05	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr2	232319524	T	A	0.00245	NCL	-	FALSE
chr15	90820104	A	G	4.84304E-05		.	FALSE	AluY	SINE,Alu
chr3	185009713	G	T	0.00106	MAP3K13	+	FALSE
chr1	26802401	T	G	4.43852E-05	HMGN2	+	FALSE
chr5	68858545	C	G	0.00034	GTF2H2C,GTF2H2C_2	+	FALSE	AluSz	SINE,Alu
chr1	27205359	T	C	0.00301		.	FALSE	AluSc	SINE,Alu
chr6	1395043	T	C	0.00055	FOXF2	+	FALSE
chr1	23636275	G	T	0.00185	HNRNPR	-	FALSE
chr1	179042482	A	G	0.00079	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	10521238	T	C	0.00173	DFFA	-	TRUE	AluY	SINE,Alu
chr11	64084160	C	T	0.00895	ESRRA,TRMT112	+,-	FALSE
chr5	93018883	A	T	0.00393	FAM172A	-	FALSE	(TCA)n	SINE,Alu
chr1	19586532	A	G	0.00166	MRTO4	+	TRUE	AluSz	SINE,Alu
chr4	17802819	T	C	0.00316	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	143189486	A	G	0.00122	LOC102723769	-	FALSE
chr5	36143392	C	T	0.00151	LMBRD2	-	FALSE
chr1	16889596	T	C	0.00905	NBPF1	-	TRUE
chr1	114443475	A	G	0.00538	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	20977856	T	C	0.00232	PINK1,PINK1-AS	+,-	FALSE
chr8	57872143	C	T	0.00037	IMPAD1	-	FALSE
chr2	11323079	T	A	0.00586	ROCK2	-	FALSE	(TA)n	SINE,Alu
chr1	204521616	A	G	4.81420E-06	MDM4	+	TRUE	AluSg	SINE,Alu
chr8	144940327	G	A	0.00989	EPPK1	-	FALSE
chr4	17802819	T	C	0.00747	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	197070442	G	T	0.00468	ASPM	-	FALSE
chr1	10519947	T	C	0.00184		.	FALSE	AluJr	SINE,Alu
chr3	45125417	G	A	0.00024	CDCP1	-	FALSE	AluJb	SINE,Alu
chr1	44818525	T	C	0.00235	ERI3	-	FALSE
chr1	55319888	T	G	0.00000	DHCR24	-	FALSE
chr4	40138676	A	G	0.00157	N4BP2	+	FALSE
chr7	128142833	A	G	6.82570E-05	METTL2B	+	TRUE	AluSx1	SINE,Alu
chr1	46164493	T	C	0.00977	IPP	-	TRUE	AluJb	SINE,Alu
chr1	16787985	A	G	0.00053		.	FALSE	AluSz	SINE,Alu
chr1	19543465	T	C	0.00709	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	117945040	G	A	0.00181	MAN1A2	+	FALSE
chr1	1345006	A	G	1.26297E-06		.	FALSE	AluSg	SINE,Alu
chr1	100490000	A	G	0.00066	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr16	29454295	T	C	0.00019	SMG1P6,BOLA2-SMG1P6	-	TRUE	Tigger4a	SINE,Alu
chr1	16889866	G	A	0.00051	NBPF1	-	FALSE
chr2	25042625	C	G	0.00766	CENPO,ADCY3	+,-	FALSE
chr1	179876988	C	G	0.00045	TOR1AIP1	+	FALSE
chr2	37327685	T	C	0.00057		.	FALSE
chr1	569803	G	A	0.00695		.	FALSE
chr2	191556847	G	T	9.96724E-06	NAB1	+	FALSE
chr1	566933	A	G	3.50078E-05		.	FALSE
chr12	125511242	A	G	0.00015	THRIL	-	FALSE	AluSx1	SINE,Alu
chr10	77807027	T	C	0.00089	C10orf11	+	FALSE
chr14	75202288	C	T	0.00706	FCF1	+	FALSE	AluSc	SINE,Alu
chr1	179044181	A	G	0.00083	FAM20B	+	TRUE	AluSx	SINE,Alu
chr4	103718454	T	A	0.00446	LOC102723704,UBE2D3	+,-	FALSE
chr1	114940209	G	T	5.13716E-05	TRIM33	-	FALSE	(T)n	SINE,Alu
chr16	747231	T	G	0.00269	FBXL16	-	FALSE
chr1	10240859	G	T	0.00312	UBE4B	+	FALSE
chr2	9629955	G	T	0.00866	ADAM17	-	FALSE
chr2	101623533	C	T	0.00784	RPL31	+	FALSE
chr6	132780768	G	A	0.00668	STX7	-	FALSE
chr1	10520072	T	C	0.00529		.	FALSE	AluSx	SINE,Alu
chr7	2274209	T	C	0.00578	MRM2	-	FALSE	AluJr	SINE,Alu
chr1	10520331	C	T	0.00043		.	FALSE	AluSx1	SINE,Alu
chr12	56510696	A	T	0.00767	RPL41	+	FALSE
chr6	13788297	T	C	0.00077	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	24022909	T	A	0.00177	RPL11	+	FALSE
chr2	201774185	T	C	0.00932		.	FALSE	AluSz	SINE,Alu
chrX	123046306	A	G	0.00016	XIAP	+	TRUE	AluJb	SINE,Alu
chr2	101622881	C	A	1.48865E-05	RPL31	+	FALSE
chr3	5257981	T	A	3.55991E-06	EDEM1	+	FALSE	(ATTTT)n	SINE,Alu
chr1	25894472	C	G	0.00063	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	19198414	G	A	0.00028	ALDH4A1	-	FALSE
chr14	74526976	T	C	1.13179E-06	BBOF1,ALDH6A1	+,-	FALSE	AluJo	SINE,Alu
chr1	154916602	C	A	0.00475	PBXIP1	-	FALSE	MIRb	SINE,Alu
chr17	45761108	G	T	0.00127		.	FALSE
chr2	206862015	G	A	0.00026	INO80D	-	FALSE
chr3	15114288	T	C	7.51597E-05	RBSN	-	TRUE	AluY	SINE,Alu
chr1	160967856	T	C	0.00491	F11R	-	TRUE	AluSp	SINE,Alu

RBP	SRSF7
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR017PRS
Platform	HiSeq
Pubmed ID	32252787

SRSF7 - Target Gene Network