RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr15	32820880	C	G	0.00672	WHAMMP1	-	FALSE
chr1	10519936	T	C	0.00029		.	FALSE	AluJr	SINE,Alu
chr1	1255412	C	A	0.00751	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr1	44463185	T	G	0.00397	SLC6A9	-	FALSE
chr20	25427823	A	G	0.00054	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	19234134	A	G	0.00027	IFFO2	-	FALSE
chr1	237065583	G	T	0.00959	MTR	+	FALSE
chr5	9546451	G	A	0.00030	SNHG18	+	FALSE
chr1	20977599	C	G	0.00489	PINK1,PINK1-AS	+,-	FALSE
chr1	201488143	A	G	0.00492		.	FALSE	AluSz	SINE,Alu
chr1	161488402	T	A	0.00083	FCGR2A	+	FALSE
chr1	67874697	T	C	0.00190	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	52498140	G	A	0.00044	TXNDC12,KTI12	-	FALSE
chr1	179044181	A	G	0.00660	FAM20B	+	TRUE	AluSx	SINE,Alu
chr7	117832138	G	A	0.00885	LSM8	+	FALSE
chr1	6653508	G	A	0.00320	KLHL21	-	FALSE
chr1	92862888	A	G	0.00029		.	FALSE	AluJr	SINE,Alu
chr4	17804852	T	C	0.00600	DCAF16	-	TRUE	AluSx	SINE,Alu
chr11	94801637	T	C	0.00726	SRSF8	+	FALSE
chr1	114438951	A	G	0.00017	AP4B1-AS1,AP4B1	+,-	FALSE
chr1	142688599	A	G	0.00860		.	FALSE
chr1	10519982	T	C	0.00129		.	FALSE	AluJr	SINE,Alu
chr2	99812465	A	G	2.16984E-05	MRPL30	+	TRUE	AluSx	SINE,Alu
chr1	6282400	T	C	0.00385	ICMT	-	TRUE	AluSz	SINE,Alu
chr14	93712365	A	G	0.00210	BTBD7	-	FALSE
chr7	94297301	G	T	0.00145	PEG10	+	FALSE
chr1	28826085	A	G	0.00212	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr4	165998078	T	C	0.00407	TMEM192	-	TRUE	AluSx	SINE,Alu
chr1	46076462	A	G	0.00730	NASP	+	TRUE	AluSx	SINE,Alu
chr4	144475142	T	A	0.00375	SMARCA5	+	FALSE
chr1	179813613	T	C	7.15786E-05	TOR1AIP2	-	FALSE
chr8	41401571	T	A	0.00240	LOC102723729,GINS4	+,-	FALSE
chr1	113455441	C	A	0.00047	SLC16A1	-	FALSE	(A)n	SINE,Alu
chr1	226172221	T	C	0.00118	SDE2	-	FALSE	L1MEf	SINE,Alu
chr8	11701343	T	C	0.00280	CTSB	-	TRUE	AluSx1	SINE,Alu
chr9	138798859	C	A	0.00291	CAMSAP1	-	FALSE
chr16	81064656	A	G	0.00120	CENPN	+	TRUE	AluSg	SINE,Alu
chr1	10517635	T	C	0.00124		.	FALSE	AluSx1	SINE,Alu
chr8	56985607	C	T	0.00085	RPS20	-	FALSE
chr1	9162362	T	C	0.00526		.	FALSE	AluSx	SINE,Alu
chr1	36642420	T	C	0.00358	MAP7D1	+	FALSE
chr1	36642420	T	C	0.00162	MAP7D1	+	FALSE
chr3	120128940	A	G	0.00434	FSTL1	-	FALSE
chr1	16889502	T	C	0.00516	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	6583109	T	C	6.65543E-05	NOL9	-	TRUE	AluSx4	SINE,Alu
chr2	128952006	A	G	0.00701	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr14	53242417	T	C	0.00423	GNPNAT1	-	TRUE	AluJo	SINE,Alu
chr1	154315369	C	T	0.00022	ATP8B2	+	FALSE
chr10	116603648	A	G	0.00267	FAM160B1	+	FALSE
chr15	86288387	C	T	0.00809	AKAP13	+	FALSE
chr1	67874689	T	C	1.72813E-06	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	10520117	T	C	0.00188		.	FALSE	AluSx	SINE,Alu
chr1	55060362	G	A	0.00246	ACOT11	+	FALSE
chr19	18047216	C	A	0.00113	CCDC124	+	FALSE
chr1	1650801	T	C	0.00359	CDK11B,CDK11A	-	FALSE
chr7	138732191	T	C	0.00746	ZC3HAV1	-	TRUE	MER5B	SINE,Alu
chr1	35646125	C	T	0.00027	SFPQ	-	FALSE
chr1	21100860	C	A	0.00445	HP1BP3	-	FALSE	(AC)n	SINE,Alu
chr4	2940438	T	C	0.00151	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	54636689	A	G	0.00268		.	FALSE
chr1	16912029	C	G	0.00831	NBPF1	-	FALSE
chr3	10028294	G	A	1.35555E-07	EMC3	-	FALSE
chr15	65442506	T	C	0.00088	CLPX	-	TRUE	AluSg4	SINE,Alu
chr1	19670860	A	G	0.00419	CAPZB	-	FALSE
chr5	115165731	T	C	0.00410	ATG12	-	TRUE	AluSq2	SINE,Alu
chr2	91805816	G	A	2.75786E-10		.	FALSE
chr1	6282371	T	C	0.00897	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	33148282	A	G	0.00825	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr3	156259299	T	C	0.00097	SSR3	-	TRUE	AluSq2	SINE,Alu
chr2	64687665	C	A	0.00976	LGALSL	+	FALSE
chr1	9160900	T	C	0.00893		.	FALSE	AluJb	SINE,Alu
chr3	56703746	A	C	0.00017	FAM208A	-	FALSE
chr7	26708303	G	T	0.00095	SKAP2	-	FALSE	AluSx3	SINE,Alu
chr3	12877522	A	T	0.00956	RPL32	-	FALSE
chr1	36642420	T	C	9.55653E-06	MAP7D1	+	FALSE
chr8	41401497	A	G	0.00051	LOC102723729,GINS4	+,-	FALSE	AluSq2	SINE,Alu
chr2	216300795	C	G	0.00641		.	FALSE
chr14	19684445	A	G	0.00351	DUXAP10	+	FALSE
chr12	133297966	A	G	0.00000	PGAM5	+	FALSE	AluJo	SINE,Alu
chr1	100489835	A	G	0.00230	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr1	100658578	G	A	0.00382	DBT	-	FALSE
chr11	19245854	T	C	0.00078	E2F8	-	FALSE
chr2	37331065	T	C	0.00527		.	FALSE	AluSx1	SINE,Alu
chr5	125961649	A	G	3.29658E-05	PHAX	+	TRUE	AluSz6	SINE,Alu
chr5	74324902	C	T	0.00574	GCNT4	-	FALSE
chr20	25428588	A	G	0.00068	GINS1	+	TRUE	AluJb	SINE,Alu
chr1	1647814	T	C	0.00123	CDK11B,CDK11A	-	FALSE
chr2	29135468	C	G	0.00217	WDR43	+	FALSE
chr2	192555178	C	T	0.00112	LOC105747689	+	FALSE
chr1	145512073	A	G	0.00066	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	67874697	T	C	0.00186	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	10043043	A	G	0.00529	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	9642830	T	A	0.00059	SLC25A33	+	FALSE
chr1	16954981	C	A	0.00876	CROCCP2	-	FALSE
chr3	49762662	G	T	6.99764E-06	IP6K1	-	FALSE
chr10	75534488	C	T	0.00025	FUT11	+	FALSE
chr1	10520378	T	C	0.00895		.	FALSE	AluSx1	SINE,Alu
chr1	149819554	T	C	0.00137		.	FALSE	MLT1C2	SINE,Alu
chr3	15113733	T	C	0.00228	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	44685732	T	C	9.79150E-12	DMAP1	+	FALSE
chr2	62095566	C	T	0.00471	CCT4	-	FALSE
chr19	19791270	A	G	0.00732	ZNF101	+	TRUE	AluSq2	SINE,Alu
chr1	109746728	A	G	0.00171	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	45976259	A	C	0.00015	MMACHC	+	FALSE
chr3	10192596	A	G	9.40892E-06	VHL	+	TRUE	AluSx1	SINE,Alu
chr3	124948049	T	C	0.00069	ZNF148	-	TRUE
chr1	75175797	G	A	0.00203	CRYZ	-	FALSE
chr16	10623531	T	C	1.32618E-09	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	1595540	T	C	0.00048	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	6283264	T	C	0.00073	ICMT	-	TRUE	AluSx3	SINE,Alu
chr2	200792307	G	A	0.00596	C2orf69	+	FALSE
chr1	45242978	A	G	0.00604	RPS8	+	TRUE	AluSz	SINE,Alu
chr1	112170157	C	G	0.00335	RAP1A	+	FALSE	L1ME4a	SINE,Alu
chr1	169824104	G	A	0.00744	SCYL3	-	FALSE
chr11	111930765	T	C	0.00764	DLAT	+	FALSE
chr1	53288924	A	G	0.00099	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr2	47137976	T	C	0.00398	MCFD2	-	TRUE	AluJr	SINE,Alu
chr1	26801762	G	T	0.00762	HMGN2	+	FALSE
chr1	23419855	T	C	0.00555	LUZP1	-	FALSE
chr14	19687172	C	T	0.00389	DUXAP10	+	FALSE
chr9	17829	G	A	0.00142	WASH1	-	FALSE
chr1	109181304	C	A	0.00592	FAM102B	+	FALSE
chr1	19499560	T	C	0.00226	UBR4	-	FALSE
chr1	16893841	C	T	0.00272	NBPF1	-	FALSE
chr3	197612430	A	G	0.00052		.	FALSE	AluSp	SINE,Alu
chr3	178954055	T	C	0.00308	PIK3CA	+	FALSE
chr1	53289759	A	G	0.00582	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr2	8996323	G	A	0.00159	MBOAT2	-	FALSE
chr1	114939633	G	A	0.00188	TRIM33	-	FALSE
chr1	8412989	A	G	0.00190	RERE	-	FALSE
chr1	229762054	T	A	0.00535	URB2	+	FALSE
chr11	6411935	T	C	0.00905	SMPD1	+	FALSE	(CTGGCG)n	SINE,Alu
chr1	46075664	A	G	0.00842	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	59122056	G	C	1.57132E-06	MYSM1	-	FALSE
chr1	158424898	G	A	0.00153		.	FALSE
chr14	23794557	T	A	0.00983	BCL2L2-PABPN1,PABPN1	+	FALSE	A-rich	SINE,Alu
chr10	53456599	A	G	0.00339	PRKG1,CSTF2T	+,-	FALSE
chr1	145283980	C	T	0.00113	NBPF20,NOTCH2NL	+	FALSE
chr1	24796069	A	C	0.00403	NIPAL3	+	FALSE
chr14	75202372	A	G	8.84130E-05	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	87213182	A	T	0.00072	SH3GLB1	+	FALSE
chr2	85776644	T	C	0.00127	GGCX	-	TRUE	AluSz6	SINE,Alu
chr1	67874689	T	C	1.54545E-05	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr7	2294401	A	G	0.00035	SNX8	-	FALSE
chr1	145688983	A	G	0.00101	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr15	72635903	C	T	0.00334	HEXA	-	FALSE
chr15	65442647	T	C	2.02205E-07	CLPX	-	TRUE	AluSg4	SINE,Alu
chr1	21544601	C	T	0.00196	ECE1	-	FALSE
chr2	233199107	C	T	0.00675	DIS3L2	+	FALSE
chr2	206987731	T	C	0.00731		.	FALSE	AluJb	SINE,Alu
chr19	19792403	A	G	1.20818E-05	ZNF101	+	TRUE	AluJb	SINE,Alu
chr1	10517659	T	C	0.00010		.	FALSE	AluSx1	SINE,Alu
chr1	24786	G	A	0.00285	WASH7P	-	FALSE
chr6	42854664	A	G	5.02680E-07	RPL7L1	+	TRUE	AluSc	SINE,Alu
chr1	114940211	G	T	0.00925	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	200589813	C	A	0.00034	KIF14	-	FALSE
chr1	19984100	G	C	0.00037	MINOS1-NBL1,NBL1	+	FALSE
chr1	33148214	A	G	0.00295	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	6283273	T	C	0.00109	ICMT	-	TRUE	AluSx3	SINE,Alu
chr2	27887286	G	A	0.00404	SLC4A1AP	+	FALSE
chr1	118503786	A	G	0.00135	SPAG17	-	FALSE	AluSx3	SINE,Alu
chr17	28506279	G	A	0.00634	NSRP1	+	FALSE
chr3	46007823	G	T	6.71801E-06	FYCO1	-	FALSE
chr1	117618067	C	T	0.00118	TTF2	+	FALSE
chr2	172413267	G	C	0.00938	CYBRD1	+	FALSE
chr11	8709315	A	G	0.00307	RPL27A	+	TRUE	AluYk2	SINE,Alu
chr9	137330709	G	T	0.00965	RXRA	+	FALSE	(GCTG)n	SINE,Alu
chr1	230416038	G	A	0.00626	GALNT2	+	FALSE
chr1	1650787	T	C	0.00590	CDK11B,CDK11A	-	FALSE
chr12	57923211	A	C	0.00071	MBD6	+	FALSE	(C)n	SINE,Alu
chr17	65334868	T	C	0.00096	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	155058663	G	A	0.00300	EFNA3	+	FALSE
chr9	136209400	A	G	0.00328	MED22	-	FALSE
chr1	3550061	A	C	0.00000	WRAP73	-	FALSE
chr8	87485483	G	C	0.00554	RMDN1	-	FALSE
chr1	47074462	A	G	0.00011	MOB3C	-	FALSE
chr1	78414310	C	A	0.00131	FUBP1	-	FALSE
chr1	3545194	C	G	0.00176	TPRG1L	+	FALSE
chr1	14150032	C	T	0.00163	PRDM2	+	FALSE
chr3	86993604	G	T	0.00195	VGLL3	-	FALSE	AluJo	SINE,Alu
chr1	109475572	A	G	0.00096	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr3	32524229	G	T	0.00359	CMTM6	-	FALSE
chr1	92862904	A	G	0.00279		.	FALSE	AluJr	SINE,Alu
chr2	172179003	T	C	0.00192	METTL8	-	TRUE	AluY	SINE,Alu
chr15	85185045	T	C	0.00210	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr1	3545194	C	G	0.00254	TPRG1L	+	FALSE
chr2	128064446	G	T	0.00652	MAP3K2	-	FALSE	(GT)n	SINE,Alu
chr1	177977067	A	G	0.00030	LOC730102	-	FALSE
chr1	36067925	T	C	4.53272E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	16933753	G	A	0.00740	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr12	44182706	A	G	0.00788	IRAK4	+	FALSE	MSTB-int	SINE,Alu
chr1	33148213	A	G	0.00958	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr11	118965479	G	A	0.00682	H2AFX	-	FALSE	G-rich	SINE,Alu
chr6	26096636	A	G	0.00531		.	FALSE	AluSg	SINE,Alu
chr1	16889414	T	C	0.00858	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	93308168	T	A	0.00314	FAM69A	-	FALSE
chr1	54354935	G	C	0.00831	YIPF1	-	FALSE
chr1	100615003	G	A	0.00046	TRMT13,LRRC39	+,-	FALSE
chr1	145512166	T	A	0.00736	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	143399333	T	A	0.00339		.	FALSE	L1MC4	SINE,Alu
chr1	32372360	C	T	0.00697	PTP4A2	-	FALSE	(CA)n	SINE,Alu
chr2	206987636	T	C	0.00093		.	FALSE	AluJb	SINE,Alu
chr2	84670484	T	C	0.00324	SUCLG1	-	TRUE
chr15	33064148	T	C	1.59288E-05	FMN1	-	FALSE
chr1	28661657	A	G	0.00910	MED18	+	TRUE	AluSg	SINE,Alu
chr7	144060286	A	G	0.00674	ARHGEF5	+	FALSE
chr15	91044377	T	C	0.00440	IQGAP1	+	FALSE
chr2	39210398	A	T	0.00180	SOS1	-	FALSE

RBP	RBM17
Knock-Method	shRNA
RBP Family	G-patch
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR385TMY
Platform	HiSeq
Pubmed ID	32252787

RBM17 - Target Gene Network