Dataset Overview
RBP
RBM17
Knock-Method
shRNA
RBP Family
G-patch
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR385TMY
Platform
HiSeq
Pubmed ID
32252787
RBM17 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of RBM17
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
11.1
4.27
-1.57172
4.90924E-10
8.90999E-09
A2M
3527.82
2403.65
-0.97792
1.16474E-18
8.45572E-17
AACS
10.62
7.51
-0.48895
0.00018
0.00092
AADAT
9.24
12.04
0.40358
0.01199
0.03302
AAGAB
10.36
11.77
0.48354
0.00333
0.01128
AAK1
4.32
6.82
0.75471
4.34478E-07
4.37677E-06
AARS
74.14
42.47
-0.72718
1.26147E-09
2.15979E-08
AARS2
4.14
5.36
0.39236
0.01641
0.04286
AATF
20.53
29.48
0.63150
1.08525E-06
9.95961E-06
ABCA2
17.71
17.14
-0.60264
3.97199E-07
4.04515E-06
Showing 1 to 10 of 6,114 entries
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Function Analysis of Target Genes of RBM17
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC6
16249648_16249711_16248729_16248888_16251519_16251666
0.00019
0.287
DataSet_01_405
View details
ACAA1
38175442_38175560_38173416_38173496_38178082_38178176
0.00995
-0.192
DataSet_01_405
View details
ACSL4
108939372_108939425_108926364_108926601_108976367_108976531
0.00035
0.083
DataSet_01_405
View details
ADD1
2928365_2928402_2927740_2927839_2929897_2931054
0.00296
0.064
DataSet_01_405
View details
ADD1
2928368_2928402_2927740_2927839_2929897_2931789
0.00840
0.063
DataSet_01_405
View details
ADH6
100131238_100131455_100129824_100130085_100131571_100131659
0.00284
-0.098
DataSet_01_405
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ADRM1
60883423_60883526_60883076_60883234_60883710_60883918
0.00519
0.029
DataSet_01_405
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AHSA2
61413114_61413216_61412636_61412753_61413580_61413632
0.00876
0.28
DataSet_01_405
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AHSG
186337645_186337729_186336300_186336426_186338374_186339089
0.00000
0.01
DataSet_01_405
View details
ANAPC4
25419237_25419361_25418046_25418220_25419776_25420111
0.00215
-0.158
DataSet_01_405
View details
Showing 1 to 10 of 151 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9231839_9231927_9232234_9232411_9230296_9230453
0.00144
-0.057
DataSet_01_405
View details
ACADVL
7126451_7126556_7126962_7127049_7126078_7126184
0.00000
-0.1
DataSet_01_405
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ACAP3
1229781_1230008_1230097_1230196_1229469_1229579
0.00021
-0.294
DataSet_01_405
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ACP1
272036_272150_272191_272305_271865_271939
0.00241
0.047
DataSet_01_405
View details
ADD1
2910241_2910331_2916610_2916767_2909469_2909571
0.00000
0.134
DataSet_01_405
View details
AHSG
186336300_186336426_186337645_186337729_186334975_186335139
0.00000
-0.011
DataSet_01_405
View details
AHSG
186336285_186336426_186337645_186337729_186334975_186335139
0.00000
-0.008
DataSet_01_405
View details
AHSG
186336079_186336280_186336285_186336426_186334975_186335139
0.00100
-0.007
DataSet_01_405
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ALDH7A1
125891622_125891707_125894931_125895026_125889978_125890085
0.00000
-0.103
DataSet_01_405
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ALG8
77820487_77820627_77824931_77825035_77817852_77817992
0.00003
0.283
DataSet_01_405
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Showing 1 to 10 of 223 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
APEX1
20923423_20923535_20923423_20923429_20923736_20923831
0.00730
-0.101
DataSet_01_405
View details
ARHGEF7
111932884_111933092_111932884_111933024_111935485_111935710
0.00341
-0.1
DataSet_01_405
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CCNK
99969091_99969321_99969091_99969306_99969947_99969981
0.00815
-0.504
DataSet_01_405
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CLEC2D
9840497_9840757_9840497_9840682_9845423_9845527
0.00323
-0.169
DataSet_01_405
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CLSTN3
7303139_7303358_7303139_7303285_7303523_7303659
0.00886
0.024
DataSet_01_405
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FDPS
155287959_155288123_155287959_155288082_155288455_155288544
0.00021
0.083
DataSet_01_405
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GNAS
57466814_57466905_57466814_57466886_57470666_57470739
0.00000
-0.828
DataSet_01_405
View details
KIF22
29809913_29810156_29809913_29810068_29810295_29810505
0.00988
0.199
DataSet_01_405
View details
MERTK
112779834_112780082_112779834_112779971_112785927_112786870
0.00807
0.046
DataSet_01_405
View details
MYL6
56553370_56553489_56553370_56553406_56553758_56553932
0.00371
0.04
DataSet_01_405
View details
Showing 1 to 10 of 17 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABLIM1
116207638_116207811_116207638_116207779_116211382_116211430
0.00005
-0.183
DataSet_01_405
View details
ACAA2
47311566_47311742_47311566_47311697_47313660_47313731
0.00091
-0.245
DataSet_01_405
View details
ACAD11
132297639_132297900_132297639_132297725_132298335_132298402
0.00000
0.238
DataSet_01_405
View details
ACIN1
23533313_23533466_23533313_23533430_23533563_23533694
0.00428
-0.109
DataSet_01_405
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AKT2
40740951_40741086_40740951_40741030_40741169_40741374
0.00515
-0.202
DataSet_01_405
View details
C17orf76-AS1
16342841_16343017_16342973_16343017_16342640_16342728
0.00324
-0.087
DataSet_01_405
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CBX3
26248012_26248175_26248085_26248175_26245987_26246130
0.00983
-0.05
DataSet_01_405
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CENPE
104059507_104059609_104059507_104059606_104061412_104061571
0.00668
-0.495
DataSet_01_405
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CPSF3L
1254760_1255223_1254760_1254904_1255835_1255876
0.00055
-0.032
DataSet_01_405
View details
CPSF6
69663257_69663353_69663291_69663353_69656149_69656342
0.00319
0.08
DataSet_01_405
View details
Showing 1 to 10 of 41 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACAD11
132297639_132298402_132297639_132297725_132298335_132298402
0.00001
0.224
DataSet_01_405
View details
AP1G2
24034814_24035369_24034814_24034910_24035024_24035369
0.00282
-0.044
DataSet_01_405
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B4GALNT4
375638_375956_375638_375773_375846_375956
0.00859
-0.079
DataSet_01_405
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DHRS2
24109002_24112428_24109002_24109104_24110874_24112428
0.00055
-0.08
DataSet_01_405
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DPP9
4684674_4685783_4684674_4684821_4685637_4685783
0.00680
-0.098
DataSet_01_405
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EPB41L2
131190991_131191266_131190991_131191084_131191178_131191266
0.00060
0.062
DataSet_01_405
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FBXO9
52957531_52958359_52957531_52957622_52958263_52958359
0.00007
-0.173
DataSet_01_405
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FTH1
61734783_61735103_61734783_61734843_61734929_61735103
0.00001
0.057
DataSet_01_405
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GSDMD
144643171_144643593_144643171_144643274_144643539_144643593
0.00616
-0.175
DataSet_01_405
View details
HNRNPH1
179043908_179044111_179043908_179043959_179044051_179044111
0.00000
-0.072
DataSet_01_405
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
10519936
T
C
0.00029
.
FALSE
AluJr
SINE,Alu
chr1
1255412
C
A
0.00751
CPSF3L
-
FALSE
(GCAGG)n
SINE,Alu
chr1
44463185
T
G
0.00397
SLC6A9
-
FALSE
chr1
19234134
A
G
0.00027
IFFO2
-
FALSE
chr1
237065583
G
T
0.00959
MTR
+
FALSE
chr1
20977599
C
G
0.00489
PINK1,PINK1-AS
+,-
FALSE
chr1
201488143
A
G
0.00492
.
FALSE
AluSz
SINE,Alu
chr1
161488402
T
A
0.00083
FCGR2A
+
FALSE
chr1
67874697
T
C
0.00190
SERBP1
-
TRUE
AluSx3
SINE,Alu
chr1
52498140
G
A
0.00044
TXNDC12,KTI12
-
FALSE
Showing 1 to 10 of 208 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression