RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr15	74319092	A	G	0.00029	PML	+	TRUE	AluSz6	SINE,Alu
chr6	42855967	A	G	0.00151	RPL7L1	+	TRUE	AluSz	SINE,Alu
chrX	3526615	G	T	0.00820	PRKX	-	FALSE
chr1	144014068	T	C	0.00029		.	FALSE
chr10	117823566	G	T	0.00433	GFRA1	-	FALSE	(ATC)n	SINE,Alu
chr1	67874849	T	C	0.00169	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	10517688	T	C	0.00020		.	FALSE	AluSx1	SINE,Alu
chr5	125961447	A	G	0.00242	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	1337737	G	C	2.51903E-05	MRPL20	-	FALSE
chr1	27202981	T	C	0.00660		.	FALSE	AluSq2	SINE,Alu
chr2	128950515	A	G	0.00208	UGGT1	+	TRUE	AluSc	SINE,Alu
chr19	47278340	A	G	0.00449	SLC1A5	-	FALSE	(AC)n	SINE,Alu
chr2	96915238	T	C	2.48142E-05		.	FALSE	AluJr	SINE,Alu
chr1	20977380	T	C	0.00429	PINK1,PINK1-AS	+,-	FALSE
chr17	62541203	G	A	0.00660	SMURF2	-	FALSE
chr1	148752615	C	A	0.00042		.	FALSE
chr17	41144581	A	C	0.00806	RUNDC1	+	FALSE	AluSx	SINE,Alu
chr1	117530213	G	T	0.00256	PTGFRN	+	FALSE
chr17	45761108	G	T	0.00127		.	FALSE
chr1	10520180	T	C	0.00959		.	FALSE	AluSx	SINE,Alu
chr1	11084103	T	A	0.00044	TARDBP	+	FALSE
chr3	183861243	A	G	0.00049	EIF2B5	+	FALSE
chr6	13790888	T	C	0.00442	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr1	226171340	T	C	0.00462	SDE2	-	TRUE	BC200	SINE,Alu
chr1	111489903	A	C	0.00666	LRIF1	-	FALSE
chr18	10691357	G	A	0.00082	PIEZO2	-	FALSE
chr1	214529320	T	G	0.00365	PTPN14	-	FALSE	AluJb	SINE,Alu
chr2	128061053	A	G	0.00184	MAP3K2	-	FALSE
chr8	37613073	A	C	0.00394	ERLIN2	+	FALSE	(CCCCCAC)n	SINE,Alu
chr1	182358196	C	G	0.00929	GLUL	-	FALSE
chr1	206566195	C	T	0.00334	SRGAP2	+	FALSE
chr1	109351501	A	G	0.00921	STXBP3	+	FALSE
chr1	40537944	C	A	0.00371	CAP1	+	FALSE
chr6	160526904	T	G	0.00027	IGF2R	+	FALSE
chr1	31345785	T	A	0.00962	SDC3	-	FALSE
chr17	48771488	C	A	0.00148	ANKRD40	-	FALSE	AluSz	SINE,Alu
chr1	3545194	C	G	0.00176	TPRG1L	+	FALSE
chr19	11256689	T	C	9.47404E-06	SPC24	-	TRUE	AluJr4	SINE,Alu
chr1	10517314	T	C	0.00286		.	FALSE	AluJr	SINE,Alu
chr1	6282318	T	C	0.00418	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	2113565	T	G	0.00429	PRKCZ	+	FALSE
chr2	202030111	A	G	0.00983	CFLAR	+	TRUE	AluSx1	SINE,Alu
chr1	119427687	G	C	0.00823	TBX15	-	FALSE
chr1	22852880	G	C	0.00247	ZBTB40	+	FALSE
chr4	95586725	T	A	0.00743	PDLIM5	+	FALSE
chr2	70316299	C	A	0.00650	PCBP1	+	FALSE
chr1	19934838	C	T	2.17786E-05	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr6	150047362	T	C	0.00076	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	155217438	A	T	0.00610	FAM189B	-	FALSE
chr16	10625414	T	C	0.00015	EMP2	-	TRUE	AluSx	SINE,Alu
chr2	203742141	T	C	0.00044		.	FALSE	AluJb	SINE,Alu
chr1	2125114	C	T	8.70493E-12	FAAP20	-	FALSE
chr2	198572083	T	A	0.00272	MARS2	+	FALSE
chr19	13884084	A	G	0.00843	MRI1	+	TRUE	AluSz	SINE,Alu
chr1	24086807	T	C	0.00352	TCEB3	+	FALSE	(T)n	SINE,Alu
chr1	35652608	A	G	0.00026	SFPQ	-	FALSE
chr17	57281098	A	G	0.00181	PRR11	+	TRUE	AluSz	SINE,Alu
chr3	122283290	G	C	0.00029	DTX3L,PARP9	+,-	FALSE
chr9	37503490	A	G	0.00612	POLR1E	+	TRUE	AluJb	SINE,Alu
chr1	10520683	T	C	0.00457	DFFA	-	TRUE	AluSc8	SINE,Alu
chr2	10567337	G	C	0.00940	HPCAL1	+	FALSE
chr2	132275343	G	T	0.00334	LOC150776	+	FALSE
chr6	150046601	T	C	0.00073	NUP43	-	TRUE	AluSq2	SINE,Alu
chr2	61764922	G	C	0.00679	XPO1	-	FALSE
chr3	42253664	C	T	0.00065	TRAK1	+	FALSE
chr2	118854086	G	C	0.00066	INSIG2	+	FALSE
chr16	10623544	T	C	2.29348E-06	EMP2	-	TRUE	AluSp	SINE,Alu
chr10	75008876	T	C	0.00255	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	203711876	G	A	0.00444	ATP2B4	+	FALSE
chr1	16974666	C	T	0.00131	MST1P2	+	FALSE
chr1	246829873	G	A	0.00342	CNST	+	FALSE
chrX	2824979	T	C	0.00049	ARSD	-	TRUE	AluSx1	SINE,Alu
chr1	3550061	A	C	0.00000	WRAP73	-	FALSE
chr1	184761350	T	C	0.00754	FAM129A	-	TRUE	AluJo	SINE,Alu
chr1	145689717	A	G	3.41980E-05	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr6	44222158	T	A	0.00781	SLC35B2	-	FALSE
chr1	11979815	A	C	0.00072	KIAA2013	-	FALSE
chr10	1086801	G	C	0.00421	IDI2-AS1,IDI1	+,-	FALSE
chr1	93827764	A	G	0.00056	DR1	+	FALSE
chr1	28920944	A	G	0.00446	RAB42	+	TRUE	AluSx	SINE,Alu
chr1	28832533	G	A	0.00761	SNHG3,RCC1	+	FALSE
chr12	123346997	G	C	0.00275	HIP1R	+	FALSE
chr1	26900708	G	A	0.00349	RPS6KA1	+	FALSE
chr3	10290515	G	A	0.00904	TATDN2	+	FALSE
chr1	1417974	C	T	0.00677	ATAD3B	+	FALSE
chr12	25360463	A	T	0.00118	KRAS	-	FALSE
chr1	145369589	T	C	0.00128	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	19543282	T	C	0.00020	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	203741065	T	C	2.92684E-06		.	FALSE
chr1	204526710	A	G	0.00082	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	46828653	T	A	0.00920	NSUN4	+	FALSE
chr10	89004545	T	C	0.00057	NUTM2A-AS1	-	FALSE	MSTA	SINE,Alu
chr1	32372387	A	C	0.00757	PTP4A2	-	FALSE	(CA)n	SINE,Alu
chr13	46530764	T	G	0.00385		.	FALSE
chr2	20401855	G	A	0.00107	SDC1	-	FALSE
chr1	44423703	C	T	1.17684E-14	IPO13	+	FALSE
chr1	11785182	A	G	0.00262		.	FALSE	AluJr	SINE,Alu
chr1	6257826	T	C	0.00560	RPL22	-	FALSE
chr3	44790624	T	C	0.00150	KIAA1143	-	TRUE	AluY	SINE,Alu
chr2	37331531	T	C	0.00063		.	FALSE	AluJb	SINE,Alu
chr15	85185205	T	C	0.00459	WDR73,SCAND2P	+,-	FALSE	FLAM_C	SINE,Alu
chr21	33974092	G	C	0.00865	C21orf59	-	FALSE
chr3	15113655	T	C	6.08503E-07	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	145116027	T	C	1.71852E-07	NBPF20,SEC22B	+	FALSE
chr6	42855962	A	G	0.00781	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr5	56177872	A	G	0.00618	MAP3K1	+	TRUE	(CAA)n	SINE,Alu
chr5	140798639	G	C	3.89156E-05	PCDHGA1,PCDHGA2,PCDHGA3,PCDHGB1,PCDHGA4,PCDHGB2,PCDHGA5,PCDHGB3,PCDHGA6,PCDHGA7,PCDHGB4,PCDHGA8,PCDHGB5,PCDHGA9,PCDHGB6,PCDHGA10,PCDHGB7	+	FALSE
chr2	54896391	C	T	0.00162	SPTBN1	+	FALSE
chr2	27315252	G	A	0.00377	KHK	+	FALSE
chr6	3021492	A	G	0.00613	HTATSF1P2	-	FALSE	Tigger3a	SINE,Alu
chr1	19585917	T	A	0.00308	MRTO4	+	FALSE	AluJr	SINE,Alu
chrX	123045103	A	G	0.00996	XIAP	+	TRUE	AluSp	SINE,Alu
chr1	226333556	C	A	0.00977	ACBD3	-	FALSE	(CAAAA)n	SINE,Alu
chr5	68850966	G	T	0.00134	OCLN	+	FALSE	AluSx4	SINE,Alu
chr2	206983267	T	C	0.00133		.	FALSE	AluJb	SINE,Alu
chr2	201842323	T	C	0.00254	FAM126B	-	TRUE	AluJb	SINE,Alu
chr1	38423205	A	G	0.00923	SF3A3	-	FALSE	AluJo	SINE,Alu
chr1	1152631	C	A	0.00517	SDF4	-	FALSE
chr1	67874696	T	C	0.00839	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr8	71550832	T	C	0.00725	LACTB2-AS1,LACTB2	+,-	FALSE
chr1	24989266	A	T	0.00392	SRRM1	+	FALSE
chr1	160966299	T	C	0.00033	F11R	-	TRUE	AluSg	SINE,Alu
chr17	57279167	A	G	0.00071	PRR11	+	TRUE	AluSq2	SINE,Alu
chr7	102119322	T	C	0.00834	POLR2J	-	FALSE
chr2	189877304	A	T	0.00612	COL3A1	+	FALSE
chr12	133298019	A	G	2.77684E-05	PGAM5	+	TRUE	AluJo	SINE,Alu
chr14	50053350	T	A	0.00071		.	FALSE	7SLRNA	SINE,Alu
chr9	131872853	C	G	0.00108	CRAT	-	FALSE
chr1	789232	C	T	0.00335	LINC01128	+	FALSE
chr1	46075171	A	C	0.00280	NASP	+	FALSE	A-rich	SINE,Alu
chr14	53109677	T	C	5.62031E-05	ERO1A	-	FALSE
chr2	37329300	T	C	0.00590		.	FALSE	AluJr4	SINE,Alu
chr1	53366673	A	G	0.00243	ECHDC2	-	FALSE	AluJb	SINE,Alu
chr1	87213177	C	A	0.00020	SH3GLB1	+	FALSE
chr1	110136321	T	A	0.00721	GNAI3	+	FALSE
chr1	33147722	G	A	1.17176E-11	SYNC,RBBP4	+,-	FALSE
chr1	28835937	A	G	0.00121	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	32697063	T	C	0.00035	EIF3I	+	FALSE	AluSp	SINE,Alu
chr2	203744629	T	C	0.00363		.	FALSE	AluSx1	SINE,Alu
chr1	182569291	A	T	0.00979	RGS16	-	FALSE
chr5	121362874	A	G	0.00607	SRFBP1	+	TRUE	FRAM	SINE,Alu
chr1	212910930	G	A	2.01027E-05	NSL1	-	FALSE
chr12	9848629	A	G	0.00027	CLEC2D	+	FALSE
chr21	46353985	A	G	0.00985	LINC01547	-	FALSE	MER5A	SINE,Alu
chr2	151326173	A	C	0.00143	RND3	-	FALSE
chr5	170832637	C	T	0.00071	NPM1	+	FALSE
chr6	13788222	T	C	0.00490	MCUR1	-	TRUE	AluSx	SINE,Alu
chr2	128603087	T	C	0.00036		.	FALSE	AluSp	SINE,Alu
chr2	37331019	T	C	0.00597		.	FALSE	AluSx1	SINE,Alu
chr3	148863151	A	G	0.00062	HPS3	+	FALSE
chr3	195461463	A	G	0.00609		.	FALSE	AluJb	SINE,Alu
chr12	133297934	A	G	9.03426E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	218617543	G	A	0.00291	TGFB2	+	FALSE
chr5	179020622	T	C	2.11448E-05	RUFY1	+	FALSE
chr1	145283733	A	G	0.00458	NBPF20,NOTCH2NL	+	FALSE
chr6	116256595	C	A	5.71236E-05		.	FALSE
chr1	931935	T	C	0.00796		.	FALSE
chr9	111779229	T	C	0.00269	TMEM245	-	FALSE
chr2	217366896	A	G	0.00457		.	FALSE	AluSz6	SINE,Alu
chr7	65844062	T	A	0.00733	LINC00174	-	FALSE
chr6	90344605	T	C	0.00013	LYRM2	-	TRUE	AluSz6	SINE,Alu
chr1	45975628	A	G	0.00465	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr8	25272364	C	G	0.00693	DOCK5	+	FALSE
chr1	19543973	T	C	0.00236	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr6	74134744	T	C	0.00214		.	FALSE	AluSz	SINE,Alu
chr3	10065426	C	T	0.00776	CIDECP	-	FALSE
chr2	37331525	T	C	0.00020		.	FALSE	AluJb	SINE,Alu
chr1	53680090	G	A	0.00321	C1orf123	-	FALSE
chr1	224302047	C	T	3.20569E-05	FBXO28	+	FALSE
chr1	6282400	T	C	0.00601	ICMT	-	TRUE	AluSz	SINE,Alu
chr5	43700242	A	G	0.00932	NNT	+	FALSE
chr1	12071680	A	G	5.54475E-07	MFN2	+	FALSE
chr15	41590287	A	G	0.00319	OIP5-AS1	+	FALSE
chr2	37328008	T	C	0.00733		.	FALSE
chr1	93297605	C	G	0.00319	RPL5	+	FALSE
chr2	152334421	A	G	0.00464		.	FALSE	AluSq	SINE,Alu
chr20	43996145	T	A	0.00611	SYS1-DBNDD2,SYS1	+	FALSE
chr3	33138549	G	A	0.00612	GLB1	-	FALSE
chr1	3730400	T	C	0.00894	CEP104	-	TRUE	AluSx3	SINE,Alu
chr10	15120179	T	C	3.12210E-06	ACBD7	-	FALSE	L1PA7	SINE,Alu
chr1	8412989	A	G	0.00225	RERE	-	FALSE
chr1	46828700	A	G	0.00273	NSUN4	+	FALSE
chr1	211921702	T	C	0.00014	LPGAT1	-	FALSE
chr2	183643241	C	A	0.00108	DNAJC10	+	FALSE
chr1	117644949	C	G	0.00440	TTF2	+	FALSE
chr16	19715588	T	C	0.00063		.	FALSE	AluSg	SINE,Alu
chr1	97144750	T	C	0.00262		.	FALSE
chr1	15899630	T	C	0.00082	AGMAT	-	TRUE	AluSq2	SINE,Alu
chr1	32833540	T	C	0.00381	BSDC1	-	TRUE
chr17	79674375	C	T	0.00129	MRPL12	+	FALSE
chr1	19542631	T	C	0.00176	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr2	32532809	A	G	0.00255		.	FALSE	AluSx1	SINE,Alu
chr1	10517613	T	C	0.00375		.	FALSE	AluSx1	SINE,Alu
chr15	33064791	G	A	0.00203	FMN1	-	FALSE
chr1	214524531	T	C	0.00753	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	179327008	A	G	0.00168	SOAT1	+	TRUE
chr1	1573181	C	A	0.00038	CDK11B	-	FALSE
chr5	40832553	A	T	9.00390E-07	RPL37	-	FALSE
chr12	125511226	A	G	0.00205	THRIL	-	FALSE	AluSx1	SINE,Alu
chr7	22981942	G	A	0.00041	FAM126A	-	FALSE
chr1	190234133	A	C	5.13910E-06	BRINP3	-	FALSE
chr1	85787118	G	C	0.00104	DDAH1	-	FALSE
chr1	26161104	C	A	0.00030	AUNIP	-	FALSE	AluSc8	SINE,Alu
chr1	10042955	A	G	0.00131	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr4	57326262	A	G	2.33397E-05	PAICS	+	TRUE	AluJr	SINE,Alu
chr11	18552269	T	A	0.00066		.	FALSE	AluJr	SINE,Alu
chr15	90819418	A	G	0.00516		.	FALSE	AluSx	SINE,Alu
chr1	200521412	G	A	0.00110	KIF14	-	FALSE
chr7	156764350	G	C	0.00415	NOM1	+	FALSE
chr1	203821865	C	T	0.00222	ZC3H11A	+	FALSE
chr1	85785550	C	A	0.00134	DDAH1	-	FALSE
chr15	83659311	C	T	0.00858	FAM103A1,C15orf40	+,-	FALSE
chr1	6583593	T	C	0.00088	NOL9	-	TRUE	AluSq	SINE,Alu
chr10	120795222	A	T	0.00193	EIF3A	-	FALSE
chr1	44088117	G	T	0.00731	PTPRF	+	FALSE	(T)n	SINE,Alu
chr9	19373161	A	G	0.00647	DENND4C	+	TRUE	MADE1	SINE,Alu
chr1	109967951	A	C	0.00095	PSMA5	-	FALSE
chr4	2517223	A	G	2.74855E-08	RNF4	+	FALSE
chr16	10623706	T	C	0.00064	EMP2	-	TRUE	AluSp	SINE,Alu
chr17	73940094	T	C	0.00557	ACOX1	-	TRUE	AluJb	SINE,Alu
chr17	73940077	T	C	0.00146	ACOX1	-	TRUE	AluJb	SINE,Alu
chr4	38945689	C	T	1.01800E-05	FAM114A1	+	FALSE	AluSc	SINE,Alu
chr5	14696117	T	C	0.00807	OTULIN	+	FALSE
chr1	183094547	T	C	0.00277	LAMC1	+	FALSE
chr1	19543797	T	C	0.00754	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr2	64687665	C	A	0.00976	LGALSL	+	FALSE
chr1	9732611	T	C	0.00321	PIK3CD,PIK3CD-AS2	+,-	FALSE	AluJo	SINE,Alu
chr12	133298417	A	G	6.66134E-16	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	36067838	T	C	0.00081	PSMB2	-	TRUE	AluSz	SINE,Alu
chr4	248783	A	G	0.00901	ZNF876P	+	FALSE	L1MA3	SINE,Alu
chr2	65496144	A	G	0.00883	ACTR2	+	FALSE
chr1	145368665	G	A	0.00031	NBPF20,NBPF10	+	FALSE
chr1	144931392	G	A	0.00241	NBPF20,PDE4DIP	+,-	FALSE
chr1	237064432	C	G	0.00019	MTR	+	FALSE
chr1	78414285	T	A	0.00256	FUBP1	-	FALSE
chr17	421931	T	C	0.00260	VPS53	-	TRUE	AluSx	SINE,Alu
chr5	74072648	T	A	0.00036	NSA2	+	FALSE
chr1	10517659	T	C	0.00010		.	FALSE	AluSx1	SINE,Alu
chr3	15296357	A	T	3.39714E-05	SH3BP5,SH3BP5-AS1	+,-	FALSE
chr1	10520672	T	C	0.00584	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	36068278	T	C	0.00068	PSMB2	-	TRUE	AluSc	SINE,Alu

RBP	UPF1
Knock-Method	shRNA
RBP Family	UPF1_Zn_bind
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR251ABP
Platform	HiSeq
Pubmed ID	32252787

UPF1 - Target Gene Network