Dataset Overview
RBPAGGF1
Knock-MethodshRNA
RBP FamilyG-patch
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR812TLY
PlatformHiSeq
Pubmed ID32252787

AGGF1 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of AGGF1
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of AGGF1


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr1120839681CA0.00125FAM72B+FALSE
chr12115914GT0.00970PRKCZ,FAAP20+,-FALSE
chr145279900TC0.00073.FALSE(TCTT)nSINE,Alu
chr291805928TC0.00000.FALSEMLT1H1SINE,Alu
chr1115313039AG0.00895SIKE1-FALSE
chr210586904CT0.00041ODC1,SNORA80B-FALSE
chr1461112736TG0.00418SIX1-FALSE(T)nSINE,Alu
chr12133635613TC0.00024.FALSE
chr2025427801AG0.00300GINS1+TRUEAluSzSINE,Alu
chr136067677TC0.00017PSMB2-TRUEAluSzSINE,Alu
chr195658342AT0.00123TMEM56-RWDD3,LOC101928118,TMEM56+,-FALSE
chr136924851TC0.00493MRPS15-TRUEAluJbSINE,Alu
chr1453242639TC1.43651E-05GNPNAT1-TRUEAluJrSINE,Alu
chr1098278593AT0.00792TM9SF3-FALSE
chr18045340CA0.00059PARK7+FALSE
chr76442891GA0.00134RAC1+FALSE
chr136531942AG0.00042.FALSEAluSq2SINE,Alu
chr4248996AG0.00123ZNF876P+TRUEAluYk3SINE,Alu
chr1530781885CT0.00380.FALSE
chr654805688AC0.00220FAM83B+FALSE
chr540832557GT5.89786E-05RPL37-FALSE
chr2223436459AT1.48017E-05FARSB-FALSE
chr237429627AG0.00027CEBPZOS,CEBPZ+,-FALSEAluSzSINE,Alu
chr1206566948GA0.00228SRGAP2+FALSE
chr1919792345AG0.00272ZNF101+TRUEAluJbSINE,Alu
chr35258236GC3.37681E-06EDEM1+FALSE
chr3196079691TC0.00507.FALSEAluScSINE,Alu
chr139317318CA1.55431E-15RRAGC-FALSE
chr1201846616CG0.00209IPO9+FALSE(CA)nSINE,Alu
chr1565442483TC0.00523CLPX-TRUEAluSg4SINE,Alu
chr3124948047CG0.00285ZNF148-FALSE
chr2146935076TG0.00164SLC19A1-FALSE
chr1206566948GA0.00879SRGAP2+FALSE
chr186117191TC1.34616E-06ZNHIT6-TRUEAluSgSINE,Alu
chr116921146TC0.00835NBPF1-FALSE
chr19644587AG0.00022.FALSEAluSxSINE,Alu
chr799649179AG0.00360ZSCAN21+TRUEAluYSINE,Alu
chr9132575836AC0.00546TOR1A-FALSE
chr333458266TC0.00035UBP1-FALSE
chr3183529603GA0.00219YEATS2+FALSE
chr299812447AG0.00525MRPL30+TRUEAluSxSINE,Alu
chr538904482GA0.00048OSMR+FALSE
chr2208619699AG0.00741CCNYL1+TRUEAluJbSINE,Alu
chr119545145AT0.00510LOC101927895,EMC1+,-FALSE
chr1144828857CG4.37583E-07NBPF20,NBPF9+FALSE
chr125169201GT0.00341CLIC4+FALSE
chr274690039GA0.00412MOGS-FALSE
chr117326540GA0.00120ATP13A2-FALSE
chr128825427AG0.00484PHACTR4+TRUEAluSgSINE,Alu
chr119984100GC0.00037MINOS1-NBL1,NBL1+FALSE
chr3101284940TC1.85568E-05TRMT10C+FALSE
chr1144595935GA0.00860NBPF20+FALSEAluJbSINE,Alu
chr1959093997AG0.00047CENPBD1P1+TRUEAluYSINE,Alu
chr247398328GA0.00434CALM2-FALSE
chr473922981TC0.00491COX18-TRUEAluSzSINE,Alu
chr5171533782TC0.00039STK10-FALSE
chr41380585AG0.00644UVSSA+TRUEAluJrSINE,Alu
chr11663957CT0.00345SLC35E2-FALSE
chr373117835CT2.08399E-05PPP4R2+FALSE
chr1145293515AG4.09953E-06NBPF20,NBPF10+FALSE
chr1179326882AG1.03454E-05SOAT1+TRUEAluJoSINE,Alu
chr5179041779CT0.00430HNRNPH1-FALSE
chr1212911836TC0.00675NSL1-FALSE
chr344790781TC0.00158KIAA1143-TRUEAluYSINE,Alu
chr1179070646TC0.00283ABL2-TRUEAluSzSINE,Alu
chr1118502087CT0.00585WDR3,SPAG17+,-FALSE
chr119585207GA0.00672MRTO4+FALSE
chr16282301TC0.00290ICMT-TRUEAluSzSINE,Alu
chr1158424898GA0.00153.FALSE
chr568463014GT0.00011CCNB1+FALSE
chr9131872862CG0.00131CRAT-FALSE
chr140537942AC0.00955CAP1+FALSE(A)nSINE,Alu
chr145975673AG0.00242MMACHC+TRUEAluSx4SINE,Alu
chr1204521239AG0.00095MDM4+TRUEAluSpSINE,Alu
chr17263417CT0.00675LOC105371430,C17orf97+,-FALSE
chr1165544342TC3.74920E-05AP5B1-TRUEAluJbSINE,Alu
chr153378536TC0.00075ECHDC2-TRUEAluSpSINE,Alu
chr1234744480GA0.00409IRF2BP2-FALSE
chr192862888AG0.00029.FALSEAluJrSINE,Alu
chr128865502GA0.00531RCC1+FALSE
chr425749192CT0.00642SEL1L3-FALSE
chr47761211CT8.70555E-11AFAP1,AFAP1-AS1+,-FALSE
chrX135300016TC0.00358MAP7D3-TRUEAluSzSINE,Alu
chr1220310158AC0.00159IARS2+FALSE
chr254887287CT7.50624E-05SPTBN1+FALSE
chr1145512944AG0.00171NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr117248500AG0.00866CROCC+FALSE
chr1542503336CT0.00916TMEM87A-FALSE(T)nSINE,Alu
chr1115119377AT0.00157BCAS2-FALSE
chr189649522TC0.00358GBP4-TRUEAluJbSINE,Alu
chr1114306369AT0.00341RSBN1-FALSE
chr1118071289AG0.00023.FALSE
chr126755536AG0.00515LIN28A+TRUEAluScSINE,Alu
chr8144827207AT0.00038FAM83H-AS1+FALSEERVL-B4-intSINE,Alu
chr3194369580CA0.00042LSG1-FALSE
chr167874270GA0.00019SERBP1-FALSE
chr310192747AG0.00065VHL+TRUEAluSx1SINE,Alu
chr299812857AG0.00040MRPL30+TRUEAluJbSINE,Alu
chr1100489619AG0.00319SLC35A3+TRUE
chr136068243TC0.00217PSMB2-TRUEAluScSINE,Alu
chr1117945049GA0.00030MAN1A2+FALSE
chr139500293TA0.00552NDUFS5+FALSE
chr1112003957GA0.01000ATP5F1+FALSEHelitron2Na_MamSINE,Alu
chr1913054924AC0.00982CALR+FALSE
chr299216531AG0.00049COA5-FALSEMLT1KSINE,Alu
chr153291434AG0.00545ZYG11B+TRUEAluJrSINE,Alu
chr116889596TC0.00093NBPF1-TRUE
chr274349080AG0.00094.FALSEAluSzSINE,Alu
chr1945406538CG0.00119TOMM40+FALSE
chr357549504AG0.00384PDE12+TRUEAluJbSINE,Alu
chr386992161CG0.00050VGLL3-FALSE(GT)nSINE,Alu
chr190152146CT1.61967E-05LRRC8C+FALSE
chr919376249GT5.55883E-05.FALSE
chr1668962CT0.00852.FALSE
chr1179042555AG0.00922FAM20B+TRUEAluSx1SINE,Alu
chr116160968CT0.00524FLJ37453-FALSE(T)nSINE,Alu
chr47764017TC0.00028AFAP1,AFAP1-AS1+,-FALSE
chr39829171GA0.00730TADA3-FALSE
chr110521254TC0.00041DFFA-TRUEAluYSINE,Alu
chr111783295GA0.00977.FALSEMER58BSINE,Alu
chr9116812614AG0.00674ZNF618+FALSE
chr1201845881AC0.00032IPO9+FALSE
chr158946773CT0.00037OMA1-FALSE
chr17827697GC0.00760CAMTA1+FALSE
chr1226171400TC0.00359SDE2-TRUEBC200SINE,Alu
chr7131241085GA0.00600PODXL-FALSE(GCA)nSINE,Alu
chr119984461CT0.00090MINOS1-NBL1,NBL1+FALSE
chr1726672364CG0.00645TNFAIP1+FALSE
chr2238253065CT0.00914COL6A3-FALSE
chr11345006AG1.26297E-06.FALSEAluSgSINE,Alu
chr1213069114CA0.00681FLVCR1+FALSE
chr2172412008CG0.00982CYBRD1+FALSE
chr131732602CA0.00336SNRNP40-FALSE
chr448854139TC0.00133OCIAD1+FALSEL2cSINE,Alu
chr154571380AG0.00332TCEANC2+TRUEAluScSINE,Alu
chr244115183TA0.00914LRPPRC-FALSE
chr457326329AG0.00077PAICS+TRUEAluJrSINE,Alu
chr1726672363GA0.00599TNFAIP1+FALSE
chrX77084001TC1.05736E-07MAGT1-TRUEAluSzSINE,Alu
chr775958147TA0.00917YWHAG-FALSE
chr1145694022AG0.00708NBPF20,NBPF10+TRUEAluSzSINE,Alu
chr1160967855TC0.00042F11R-TRUEAluSpSINE,Alu
chr1120166681GA0.00879ZNF697-FALSE
chr136068231TC0.00121PSMB2-TRUEAluScSINE,Alu
chr2136542434AT0.00606UBXN4+FALSEL1ME4bSINE,Alu
chr1200375837TG0.00490ZNF281-FALSE(T)nSINE,Alu
chr2101186088CT0.00817PDCL3+FALSE
chr1772206017TA6.66319E-05RPL38+FALSE
chr3156259229TC0.00225SSR3-TRUEAluSq2SINE,Alu
chr12125511960AG6.81205E-06THRIL-FALSEAluSx1SINE,Alu
chr159004766GT0.00213OMA1-FALSE
chr21652354GA0.00114PXDN-FALSE
chr812286546AG0.00400FAM86B2-FALSE
chr116918486CT0.00415NBPF1-FALSE
chr121810575TC0.00827NBPF3+FALSE
chr2242512159AG0.00243BOK+FALSE
chr812880299AG1.70760E-05KIAA1456+TRUEAluJoSINE,Alu
chr366428450GA0.00355SLC25A26+FALSE
chr117313654CT0.00886ATP13A2-FALSE
chr5159829024GC0.00400SLU7-FALSE
chr1156256064CT0.00619SMG5,TMEM79+,-FALSE
chr1272096335AG1.07858E-05TMEM19+FALSEAluSz6SINE,Alu
chr1179326847AG0.00846SOAT1+TRUEAluJoSINE,Alu
chr3100467676AT0.00067TFG+FALSE
chr766038472GA0.00964GS1-124K5.11-FALSE
chr110520487TC0.00257.FALSEAluSx1SINE,Alu
chr195123291GC0.00040LINC01057-FALSELTR7YSINE,Alu
chr7128143289AG0.00082.FALSEAluSc8SINE,Alu
chr116909220TC0.00029NBPF1-FALSE
chr2176789478TC0.00219LNPK-TRUEMSTB1SINE,Alu
chr553841238GT0.00267SNX18+FALSE
chr1148561090GA0.00087NBPF15+FALSE
chr5133738270TC0.00067CDKN2AIPNL-TRUEFRAMSINE,Alu
chr1778294253AG0.00031RNF213+TRUEAluSpSINE,Alu
chr765844562TC0.00695LINC00174-FALSE
chr1241796948TC0.00082OPN3,CHML-FALSE
chr5131715011AG0.00761SLC22A5+FALSE
chr116952481AG5.15865E-05CROCCP2-FALSE
chr129644328CT0.00014PTPRU+FALSE
chr1919791273AG0.00121ZNF101+TRUEAluSq2SINE,Alu
chr779848337GA0.00037GNAI1+FALSE
chr122357435AC0.00454LINC00339+FALSE
chr1220231455TC0.00274RNU5F-1,BPNT1+,-FALSEAluYSINE,Alu
chr544826677GT0.00941.FALSE(T)nSINE,Alu
chr25837878GA7.66453E-07SOX11+FALSE
chr133148691AG0.00032SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr1148251079TC0.00880NBPF8,NBPF14,NBPF9-FALSEL1MC4SINE,Alu
chr1213244381GA0.00345RPS6KC1+FALSE
chr1075008846TC0.00135DNAJC9-AS1,MRPS16+,-FALSEAluJrSINE,Alu
chr1200558363TC1.35174E-05KIF14-FALSE
chr132801745AG0.00357MARCKSL1-FALSE
chr136068295TC0.00910PSMB2-TRUEAluScSINE,Alu
chr1156692054AT0.00471ISG20L2-FALSEAluYSINE,Alu
chr16283306TC0.00609ICMT-TRUEAluSx3SINE,Alu
chr199672919TC0.00097.FALSEAluSx3SINE,Alu
chr1942731991AG0.00598.FALSEAluJrSINE,Alu
chr439289308GC0.00509RFC1-FALSE
chr919376250AT0.00706.FALSE
chr128858860CT0.00213RCC1+FALSE
chr1246829616TC0.00139CNST+FALSE
chr587566382TA0.00997TMEM161B-AS1+FALSE
chr3195243003AC0.00301PPP1R2-FALSE
chr186815303TC0.00571ODF2L-FALSE
chr42940164TC2.22609E-06NOP14-AS1,NOP14+,-FALSEAluSpSINE,Alu
chr825272447AT0.00770DOCK5+FALSE
chr1953914411AG8.16883E-05ZNF765+TRUEAluSxSINE,Alu
chr1610623660TC0.00074EMP2-TRUEAluSpSINE,Alu
chr1256510697GA0.00055RPL41+FALSE
chr517276742GA0.00320BASP1+FALSE
chr633385535AG0.00671.FALSE
chr489179595TC0.00752PPM1K-TRUEAluScSINE,Alu
chr16583457TC9.96562E-05NOL9-TRUEAluSqSINE,Alu
chr142693597AG0.00106FOXJ3-FALSE
chr310193743TC0.00456VHL+FALSEAluJrSINE,Alu
chr1206579936AG0.00747SRGAP2+FALSE
chr1179042905AG0.00034FAM20B+TRUE
chr286272758GA0.00023POLR1A-FALSE
chr4165998654TC0.00953TMEM192-TRUEAluSgSINE,Alu
chr1064911911AG0.00908NRBF2+FALSE
chr729962664AC0.00077SCRN1-FALSE
chr366430378TA0.00326LRIG1-FALSE
chr237506939AG0.00119PRKD3-FALSE
chr1569803GA0.00166.FALSE
chr19328242AG0.00018H6PD+TRUEAluJrSINE,Alu
chr154692358GA0.00195SSBP3-FALSE
chr330733403AT0.00110TGFBR2+FALSE(TA)nSINE,Alu
chr3119545349TC0.00805GSK3B-FALSE
chr342826041TG0.00019HIGD1A-FALSE
chr121101368TC0.00031HP1BP3-TRUEAluScSINE,Alu
chr1201489569GA0.00145RPS10P7+FALSE
chr128661657AG0.00910MED18+TRUEAluSgSINE,Alu
chr7116339672CT0.00876MET+FALSE
chr357126614CT0.00358IL17RD-FALSEAluYSINE,Alu
chr136068281TC0.00201PSMB2-TRUEAluScSINE,Alu
chr13730400TC0.00894CEP104-TRUEAluSx3SINE,Alu
chr127202812TC0.00353.FALSEAluSq2SINE,Alu
chr110519148TC0.00611.FALSEAluSx3SINE,Alu
chr2222050366TC0.00449PPIL2+FALSEMER5ASINE,Alu
chr5149013587GA0.00102ARHGEF37+FALSEL2dSINE,Alu
chr1156675377GC0.00935CRABP2-FALSE
chr153712215GT0.00458LRP8-FALSE
chr1341635235CT0.00400.FALSE
chr1921302035AG5.57890E-05ZNF714+TRUEAluSg4SINE,Alu
chr777409288AG7.47972E-05.FALSEAluScSINE,Alu
chr1154317153CT0.00483ATP8B2+FALSE
chr270316226AC0.00426PCBP1+FALSE
chr16614230GA0.00509NOL9-FALSE
chr535058802TC0.00152PRLR-FALSE
chr344772983CT0.00795ZNF501+FALSE
chr124022910GA0.00702RPL11+FALSE
chr642854739AC0.00671RPL7L1+FALSEAluScSINE,Alu
chr1688891240CA0.00826GALNS-FALSE
chr1765334867TC1.03096E-06PSMD12-TRUEAluSqSINE,Alu
chr337407769AT0.00406GOLGA4+FALSE
chr19643054AG5.80579E-05.FALSEAluSxSINE,Alu
chr2232325426AT0.00547NCL-FALSE(TCA)nSINE,Alu
chr457326917AG5.41162E-06PAICS+TRUEAluSx1SINE,Alu
chr1061548856TC0.00067CCDC6-FALSE
chr116945027TC0.00819CROCCP2-FALSEL1ME3CzSINE,Alu
chr1109475543AG0.00325GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr11595586TC0.00108CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr489181451TC8.32748E-05PPM1K-TRUEAluSx1SINE,Alu
chr1148004475CG7.81276E-06NBPF8-FALSE
chr16583457TC0.00075NOL9-TRUEAluSqSINE,Alu
chr6111348022AT2.41155E-06RPF2+FALSE
chr9115447534TC0.00203INIP-TRUEAluJbSINE,Alu
chr1109475706TC0.00375GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr2102484205TA0.00434MAP4K4+FALSE
chr5179665201CT0.00037MAPK9-FALSEAluSx4SINE,Alu
chr16695423TG9.25675E-05THAP3,DNAJC11+,-FALSE
chr128832533GA0.00761SNHG3,RCC1+FALSE
chr1206637133CT0.00909SRGAP2+FALSE
chr514696117TC0.00807OTULIN+FALSE
chr110519912TC0.00750.FALSEAluJrSINE,Alu
chr629910586GA1.69263E-05.FALSE
chr116933629AG0.00299NBPF1-FALSEGA-richSINE,Alu
chr1160966351TC4.07282E-11F11R-TRUEAluSgSINE,Alu
chr349460407CT0.00080NICN1-FALSEL2cSINE,Alu
chr16314822TC0.00300GPR153-FALSE
chr344839350AC0.00837KIF15+FALSE
chr126673076GA0.00465AIM1L-FALSE
chr133086876TC0.00672ZBTB8OS-TRUEAluYSINE,Alu
chr120977913TG0.00201PINK1,PINK1-AS+,-FALSE
chr1144595935GA0.00359NBPF20+FALSEAluJbSINE,Alu
chr1168218522AG9.71811E-05.FALSEAluSzSINE,Alu
chr119953130TA0.00595MINOS1,MINOS1-NBL1+FALSE
chr5118174733TC0.00037DTWD2-TRUEAluYSINE,Alu
chr2178406763TC0.00452AGPS+FALSE
chr1756049829TC5.66836E-08VEZF1-TRUE
chr3156258308TC9.02162E-07SSR3-TRUEAluYk3SINE,Alu
chr255516090CT0.00643CCDC88A-FALSE

Differential Expression Gene Analysis