RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	204521580	A	G	0.00469	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	19633555	G	A	0.00219	AKR7A2	-	FALSE
chr2	128952015	A	G	0.00086	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr1	110912873	T	C	0.00116	SLC16A4	-	FALSE
chr14	62262587	T	C	0.00153	SNAPC1	+	FALSE	FLAM_C	SINE,Alu
chr1	32661600	C	T	0.00584	TXLNA	+	FALSE	(T)n	SINE,Alu
chr3	183889337	A	T	3.46641E-05	DVL3	+	FALSE
chr2	47399601	A	G	0.00102	CALM2	-	FALSE
chr2	9630248	G	T	0.00764	ADAM17	-	FALSE
chr1	28826118	A	G	0.00175	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr4	39551018	T	C	0.00224	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr3	156258319	T	C	0.00012	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	10520331	C	T	0.00816		.	FALSE	AluSx1	SINE,Alu
chr1	223967953	C	T	0.00341	TP53BP2	-	FALSE
chr1	67874705	T	C	0.00015	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr5	79923424	T	C	0.00054	DHFR	-	TRUE	AluJr	SINE,Alu
chr2	24223159	A	G	0.00717	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr14	23794557	T	A	0.00983	BCL2L2-PABPN1,PABPN1	+	FALSE	A-rich	SINE,Alu
chr1	1431295	T	C	3.55878E-05	ATAD3B	+	FALSE
chr2	72968438	G	T	0.00147	EXOC6B	-	FALSE
chr1	16717888	G	A	0.00206	SZRD1	+	FALSE
chr1	148595665	A	G	0.00378	NBPF15	+	TRUE	L1MC4	SINE,Alu
chr10	99504630	G	T	0.00544	ZFYVE27	+	FALSE
chr1	38155698	G	T	0.00368	C1orf109	-	FALSE	AluSx1	SINE,Alu
chr1	76253041	T	A	0.00646	RABGGTB	+	FALSE
chr2	70452146	T	G	0.00192	TIA1	-	FALSE
chr2	38522141	G	T	0.00147	ATL2	-	FALSE
chr1	36642420	T	C	0.00358	MAP7D1	+	FALSE
chr19	9672981	T	C	0.00041		.	FALSE	AluSx3	SINE,Alu
chr1	38174665	G	A	0.00475	CDCA8	+	FALSE
chr1	19665566	A	C	0.00028	CAPZB	-	FALSE
chr5	37289051	T	C	0.00014		.	FALSE	AluSp	SINE,Alu
chr10	70502288	G	A	0.00347	CCAR1	+	FALSE
chr22	36677549	C	T	0.00040	MYH9	-	FALSE
chr12	27953266	G	T	0.00198	KLHL42	+	FALSE
chr1	45244421	G	A	0.00925		.	FALSE
chr7	44841933	A	G	0.00192	PPIA	+	TRUE	AluSx	SINE,Alu
chr1	10519951	T	C	0.00499		.	FALSE	AluJr	SINE,Alu
chr5	40826638	C	A	0.00749	LOC100506548	-	FALSE	LTR78	SINE,Alu
chr1	40539213	A	G	0.00693	PPT1	-	FALSE
chr1	228880135	C	T	0.00026	RHOU	+	FALSE
chr6	158505088	A	G	0.00083	SYNJ2	+	FALSE
chr1	161559407	A	G	0.00376	FCGR2C	+	FALSE
chr5	130729522	T	G	0.00506	CDC42SE2	+	FALSE	(T)n	SINE,Alu
chr1	19953120	G	A	0.00027	MINOS1,MINOS1-NBL1	+	FALSE
chr1	226352498	T	G	0.00636	ACBD3	-	FALSE
chr3	105258861	A	G	0.00030	ALCAM	+	FALSE
chr1	25169201	G	T	0.00341	CLIC4	+	FALSE
chr1	32706126	G	A	0.00932	MTMR9LP	-	FALSE
chr12	124146095	A	G	0.00431	GTF2H3	+	TRUE	AluSx4	SINE,Alu
chr1	54354935	G	C	0.00831	YIPF1	-	FALSE
chr1	46521559	A	T	0.00177	PIK3R3	-	FALSE
chr10	89004545	T	C	0.00192	NUTM2A-AS1	-	FALSE	MSTA	SINE,Alu
chr1	28564252	A	G	0.00986	ATPIF1	+	FALSE
chr1	20977748	T	G	0.00474	PINK1,PINK1-AS	+,-	FALSE
chr7	75115154	C	T	0.00405	POM121C	-	FALSE
chr6	53363500	G	T	0.00684	GCLC	-	FALSE
chr10	16554732	T	A	0.00706	PTER	+	FALSE
chr1	1595604	A	T	0.00233	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr1	28661831	A	G	9.37902E-09	MED18	+	TRUE	AluSg	SINE,Alu
chr5	79923361	T	C	0.00050	DHFR	-	TRUE	AluJr	SINE,Alu
chr1	28826130	A	G	1.79185E-05	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	36067821	T	C	1.12344E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr17	41144250	G	T	0.00025	RUNDC1	+	FALSE
chr10	71647223	A	C	0.00114	COL13A1	+	FALSE
chr2	65496075	C	T	0.00972	ACTR2	+	FALSE
chr2	74686329	C	T	0.00640	INO80B-WBP1,WBP1	+	FALSE
chr6	111591610	A	G	0.00105		.	FALSE	FLAM_A	SINE,Alu
chr17	79476999	G	T	6.09622E-06	ACTG1	-	FALSE
chr3	121351287	A	G	0.00656	HCLS1	-	FALSE
chr1	41972198	A	T	0.00276	HIVEP3	-	FALSE
chr7	44918728	T	C	0.00192	PURB	-	TRUE	AluSg	SINE,Alu
chr2	9630247	T	G	0.00638	ADAM17	-	FALSE
chr1	67874731	T	C	0.00817	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	183112505	T	C	0.00525	LAMC1	+	FALSE
chr6	34231288	A	G	0.00143		.	FALSE
chr1	62627128	A	G	0.00087	PATJ	+	TRUE	AluSx	SINE,Alu
chr3	121382204	C	T	0.00309	GOLGB1	-	FALSE
chrX	2825119	T	C	0.00670	ARSD	-	TRUE	AluSx1	SINE,Alu
chr1	19545144	G	T	0.00071	LOC101927895,EMC1	+,-	FALSE
chr1	145826918	G	C	0.00829	NBPF20,NBPF10,GPR89A	+,-	FALSE
chr1	10517513	T	C	0.00982		.	FALSE	AluSx1	SINE,Alu
chr15	43698008	C	T	0.00175	TUBGCP4	+	FALSE	AluSp	SINE,Alu
chrX	54587196	A	G	0.00392	GNL3L	+	TRUE	AluSq2	SINE,Alu
chr1	6583109	T	C	6.65543E-05	NOL9	-	TRUE	AluSx4	SINE,Alu
chr12	27955296	C	T	3.87648E-07	KLHL42	+	FALSE
chr1	237065583	G	T	0.00959	MTR	+	FALSE
chr5	115165591	T	C	0.00407	ATG12	-	TRUE	AluSq2	SINE,Alu
chr1	236716959	C	T	0.00727	HEATR1	-	FALSE
chr1	28825337	A	G	0.00313	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr4	190883001	C	G	0.00859	FRG1	+	FALSE
chr1	10519932	T	C	0.00012		.	FALSE	AluJr	SINE,Alu
chr1	16529004	A	C	3.00007E-07	ARHGEF19	-	FALSE
chr1	145289875	T	C	0.00160	NBPF20	+	FALSE	MIR	SINE,Alu
chr1	184675814	G	A	0.00048	EDEM3	-	FALSE
chr15	85184816	T	C	3.05793E-06	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr1	179813613	T	C	0.00595	TOR1AIP2	-	FALSE
chr6	42857058	A	G	3.29248E-05	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	53288862	A	G	0.00155	ZYG11B	+	TRUE	AluJo	SINE,Alu
chrM	8859	G	A	0.00929		.	FALSE
chr1	118409491	A	T	0.00471	GDAP2	-	FALSE	(A)n	SINE,Alu
chr6	13788200	T	C	0.00879	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	201846616	C	G	0.00209	IPO9	+	FALSE	(CA)n	SINE,Alu
chr1	138156	G	T	0.00413	LOC729737	-	FALSE
chr2	217366821	A	G	0.00510		.	FALSE	AluSz6	SINE,Alu
chr1	42925688	T	G	0.00637	PPCS	+	FALSE
chr1	24865333	A	G	0.00087		.	FALSE	FLAM_A	SINE,Alu
chr1	70718278	C	G	0.00663		.	FALSE
chr5	79279310	T	A	0.00167	MTX3	-	FALSE
chr1	6282383	T	C	0.00130	ICMT	-	TRUE	AluSz	SINE,Alu
chr2	37329300	T	C	0.00050		.	FALSE	AluJr4	SINE,Alu
chr1	16918502	A	G	0.00098	NBPF1	-	FALSE
chr1	156565057	T	C	0.00423	GPATCH4	-	FALSE
chr11	118620064	A	G	0.00192	DDX6	-	FALSE	(A)n	SINE,Alu
chr10	60157509	T	G	0.00296	TFAM	+	FALSE
chr1	32669918	G	A	0.00639	CCDC28B	+	FALSE
chr4	2940085	T	C	8.20099E-05	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr7	29962282	G	C	0.00023	SCRN1	-	FALSE
chr2	232319499	T	A	0.00165	NCL	-	FALSE
chr1	121134169	A	T	0.00660	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	(TTTCCT)n	SINE,Alu
chr19	48753070	T	C	0.00214	CARD8	-	TRUE
chr1	74665493	G	A	0.00128	FPGT-TNNI3K,FPGT	+	FALSE
chr1	109475706	T	C	0.00375	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr12	125511960	A	G	6.81205E-06	THRIL	-	FALSE	AluSx1	SINE,Alu
chrX	77083645	T	C	4.59952E-07	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr1	220231959	T	C	0.00028	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	9416151	G	A	0.00292	SPSB1	+	FALSE
chr1	160990875	T	C	9.42851E-06	F11R	-	FALSE
chr1	86049364	A	G	0.00207	CYR61	+	FALSE
chr10	101992793	T	C	0.00407	CWF19L1	-	TRUE	AluJb	SINE,Alu
chr1	10517314	T	C	0.00288		.	FALSE	AluJr	SINE,Alu
chr1	27205871	G	T	0.00931		.	FALSE
chr3	32567573	G	A	0.00320	DYNC1LI1	-	FALSE	(AT)n	SINE,Alu
chr1	213069783	A	G	0.00600	FLVCR1	+	FALSE
chr1	3697137	G	T	0.00250	LRRC47	-	FALSE
chr1	67874270	G	A	0.00019	SERBP1	-	FALSE
chr3	197400501	C	G	0.00270	RUBCN	-	FALSE
chr1	45975574	A	G	0.00890	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	74672474	G	A	0.00441	FPGT-TNNI3K,FPGT	+	FALSE	X12_DNA	SINE,Alu
chrX	77083981	T	C	0.00647	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	161160460	T	A	0.00298	ADAMTS4	-	FALSE	(CA)n	SINE,Alu
chr1	145293566	G	A	0.00103	NBPF20,NBPF10	+	FALSE
chr9	96438967	G	C	0.00648	PHF2	+	FALSE	(CTCCAC)n	SINE,Alu
chr2	128602366	T	C	0.00236		.	FALSE	AluSq2	SINE,Alu
chr2	204294497	C	T	0.00203	ABI2	+	FALSE
chr2	37331627	T	C	0.00030		.	FALSE	AluJb	SINE,Alu
chr1	10520154	T	C	0.00124		.	FALSE	AluSx	SINE,Alu
chr2	39212567	T	G	0.00546	SOS1	-	FALSE
chr1	153917621	G	C	0.00020	DENND4B	-	FALSE
chr7	29962665	C	T	0.00059	SCRN1	-	FALSE
chr12	133298355	A	G	0.00024	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	159946779	G	A	0.00019	LINC01133	+	FALSE	(GAAA)n	SINE,Alu
chrX	16781156	A	G	0.00061		.	FALSE	AluJo	SINE,Alu
chr5	79276281	A	G	0.00026	MTX3	-	FALSE
chr4	83351845	G	T	0.00422	ENOPH1	+	FALSE
chr1	16892275	C	T	0.00087	NBPF1	-	FALSE
chr1	155403823	A	G	0.00850	ASH1L,POU5F1P4	+,-	FALSE
chr1	59121036	A	C	0.00467	MYSM1	-	FALSE
chr1	24288529	T	C	0.00401	PNRC2	+	FALSE
chr3	42592874	T	C	9.28376E-05	SEC22C	-	FALSE	AluJr	SINE,Alu
chr1	33071146	A	G	0.00899	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr2	3592674	C	A	0.00011	RNASEH1	-	FALSE
chr1	46830110	A	G	0.00283	NSUN4	+	TRUE	AluSx1	SINE,Alu
chr1	46078630	A	G	4.65755E-11	NASP	+	FALSE
chr1	206579798	T	C	0.00883	SRGAP2	+	FALSE
chr5	32404176	C	T	0.00342	ZFR	-	FALSE
chr2	214182561	C	T	0.00703	SPAG16	+	FALSE	L1MC1	SINE,Alu
chr5	176026131	A	T	0.00979	GPRIN1	-	FALSE
chr7	94060363	T	G	2.98576E-06	COL1A2	+	FALSE
chr21	34728144	A	G	2.75061E-05	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr1	118502684	G	A	0.00682	WDR3,SPAG17	+,-	FALSE
chr1	110949720	C	T	0.00666	LAMTOR5	-	FALSE	L1ME4b	SINE,Alu
chr1	168212509	A	G	0.00765		.	FALSE
chr4	128958127	A	G	0.00556	ABHD18	+	TRUE	AluSx3	SINE,Alu
chr1	146650091	C	A	0.00361	PDIA3P1	+	FALSE
chr1	31732677	G	A	0.00030	SNRNP40	-	FALSE	A-rich	SINE,Alu
chr1	26143697	G	C	0.00778	SEPN1	+	FALSE
chr8	146280802	C	T	0.00492	C8orf33	+	FALSE	LTR13	SINE,Alu
chr9	116022893	C	A	0.00060	SLC31A1	+	FALSE
chr3	53319203	C	G	0.00453	DCP1A	-	FALSE
chr1	1622754	A	G	0.00426	CDK11B,SLC35E2B	-	FALSE	MLT1F2	SINE,Alu
chr1	74665493	G	A	7.81871E-05	FPGT-TNNI3K,FPGT	+	FALSE
chr1	26161108	A	C	7.55238E-06	AUNIP	-	FALSE	AluSc8	SINE,Alu
chr3	16301148	T	C	0.00050	DPH3	-	FALSE
chr3	156259340	T	C	0.00070	SSR3	-	TRUE	AluSq2	SINE,Alu
chr1	8045343	C	A	0.00162		.	FALSE
chr1	1571802	G	A	0.00067	CDK11B	-	FALSE
chr2	206986972	T	C	0.00462		.	FALSE	AluJr	SINE,Alu
chr16	19715518	T	C	0.00502		.	FALSE	AluSg	SINE,Alu
chr1	33145989	A	T	0.00548	SYNC,RBBP4	+,-	FALSE
chr1	6283306	T	C	0.00275	ICMT	-	TRUE	AluSx3	SINE,Alu
chr11	65179818	C	T	0.00799	FRMD8	+	FALSE
chr1	109465171	T	A	0.00989	GPSM2	+	FALSE
chr1	143135240	C	T	0.00391	LOC102723769	-	FALSE
chr2	201774341	T	C	0.00010		.	FALSE	AluSz	SINE,Alu
chr19	59095456	A	G	0.00125	CENPBD1P1	+	TRUE	AluJb	SINE,Alu
chr1	87573331	T	C	0.00699	HS2ST1	+	FALSE	(AT)n	SINE,Alu
chr1	26131654	G	A	0.00149	SEPN1	+	FALSE
chr1	9643873	A	G	0.00064		.	FALSE	AluY	SINE,Alu
chr1	16890598	T	A	0.00375	NBPF1	-	FALSE
chr5	149823799	A	T	0.00672	RPS14	-	FALSE
chr8	38829839	A	G	0.00184	PLEKHA2	+	TRUE	AluJr4	SINE,Alu
chr1	19934679	G	A	0.00354	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr16	81064534	A	G	0.00480	CENPN	+	TRUE	AluSg	SINE,Alu
chr3	196670094	G	C	0.00017	NCBP2-AS2	+	FALSE
chr1	16933658	G	A	0.00699	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr17	421034	T	C	0.00998	VPS53	-	TRUE	AluSx1	SINE,Alu
chr5	139931631	G	C	0.00138	SRA1	-	FALSE
chr7	158719116	A	G	0.00824	WDR60	+	FALSE
chr1	27204865	T	C	0.00042		.	FALSE	AluSx	SINE,Alu
chr1	6640640	T	G	0.00982	ZBTB48	+	FALSE
chr1	16953672	C	T	0.00243	CROCCP2	-	FALSE
chr3	15113519	C	T	0.00108	RBSN	-	FALSE
chr6	33384325	G	T	0.00456		.	FALSE
chr1	144931330	C	T	0.00066	NBPF20,PDE4DIP	+,-	FALSE
chr2	85773376	T	C	0.00607	GGCX	-	TRUE	AluY	SINE,Alu
chr1	118066459	A	G	1.18472E-05	MAN1A2	+	FALSE
chr2	201774244	T	C	0.00332		.	FALSE	AluSz	SINE,Alu
chr5	125961661	A	G	4.29043E-06	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	22400702	T	C	0.00883	CDC42	+	FALSE	AluSc8	SINE,Alu
chr1	16893691	C	A	0.00141	NBPF1	-	FALSE
chr5	64016339	C	T	6.96791E-06	SREK1IP1	-	FALSE
chr1	179055020	C	T	0.00738	TOR3A	+	FALSE
chr1	151846854	T	G	0.00626	THEM4	-	FALSE	AluSx	SINE,Alu
chr1	16912014	A	C	0.00704	NBPF1	-	FALSE
chr15	63356574	G	A	0.00845	TPM1	+	FALSE
chr6	26095454	A	G	0.00284	HFE	+	TRUE	AluY	SINE,Alu
chr6	29857113	C	A	0.00582		.	FALSE
chr1	87569223	G	C	0.00436	HS2ST1	+	FALSE
chr1	118502732	C	T	0.00151	WDR3,SPAG17	+,-	FALSE

RBP	ILF2
Knock-Method	shRNA
RBP Family	DZF
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR126ARZ
Platform	HiSeq
Pubmed ID	32252787

ILF2 - Target Gene Network