RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	28906337	A	G	0.00810	SNHG12,SNORA61	-	FALSE
chr3	88104158	T	A	0.00971	CGGBP1	-	FALSE
chr2	183643905	A	T	0.00113	DNAJC10	+	FALSE
chr1	26158908	G	C	0.00181	MTFR1L,AUNIP	+,-	FALSE
chr1	179044206	A	G	0.00458	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	110049203	G	C	0.00209		.	FALSE
chr17	67538540	T	C	0.00295		.	FALSE
chr1	155106227	A	T	0.00214	EFNA1	+	FALSE
chr1	54691921	G	A	0.00010	SSBP3	-	FALSE
chr3	179117663	G	C	6.59793E-05	GNB4	-	FALSE
chr1	115259768	T	C	0.00156	CSDE1	-	FALSE
chr1	10520702	T	C	0.00883	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	67896025	G	A	5.77574E-06	SERBP1	-	FALSE
chr1	53288862	A	G	0.00503	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	10518037	T	C	0.00017		.	FALSE	AluJr	SINE,Alu
chr2	24223256	A	G	0.00711	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr3	66419942	A	G	0.00284	SLC25A26	+	FALSE
chr1	161488402	T	A	0.00083	FCGR2A	+	FALSE
chr8	11172477	C	T	0.00805	MTMR9	+	FALSE
chr3	195412864	G	A	0.00725	SDHAP2	+	FALSE
chr2	228421461	G	C	0.00069	AGFG1	+	FALSE
chr4	42091668	A	G	0.00430		.	FALSE	AluSp	SINE,Alu
chr3	133538762	A	T	0.00804	SRPRB	+	FALSE
chr1	44415424	A	G	0.00213	IPO13	+	FALSE
chr1	26755303	A	G	0.00129	LIN28A	+	TRUE	AluSx1	SINE,Alu
chr17	5288079	A	C	0.00085	RABEP1	+	FALSE
chr3	137787192	T	C	0.00764	DZIP1L	-	FALSE
chr2	202242616	G	A	0.00880	TRAK2	-	FALSE
chr19	58375157	A	G	0.00408	ZNF587	+	TRUE	AluSx4	SINE,Alu
chr1	6283306	T	C	0.00275	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	3545200	G	A	0.00676	TPRG1L	+	FALSE
chr1	19586520	A	G	0.00659	MRTO4	+	TRUE	AluSz	SINE,Alu
chr2	20449068	A	G	0.00014	PUM2	-	FALSE
chr12	7045885	A	C	0.00473	ATN1	+	FALSE	(CAG)n	SINE,Alu
chr4	39549701	T	C	0.00269	UGDH-AS1,SMIM14	+,-	FALSE	AluSp	SINE,Alu
chr1	28858860	C	T	0.00213	RCC1	+	FALSE
chr5	79923360	T	C	0.00727	DHFR	-	TRUE	AluJr	SINE,Alu
chr2	176790393	C	T	0.00282	LNPK	-	FALSE	AluSp	SINE,Alu
chr2	37331627	T	C	0.00910		.	FALSE	AluJb	SINE,Alu
chr1	9642827	G	A	0.00521	SLC25A33	+	FALSE
chr15	91044383	G	T	0.00440	IQGAP1	+	FALSE
chr17	65334828	T	C	0.00160	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	25894471	G	A	0.00778	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr2	8996878	A	T	9.26766E-05	MBOAT2	-	FALSE	AluSz	SINE,Alu
chr1	23636274	G	T	0.00165	HNRNPR	-	FALSE
chr1	33148096	A	G	0.00404	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr19	39926509	A	C	0.00986	RPS16	-	FALSE
chr19	1863170	G	A	0.00204	KLF16	-	FALSE
chr3	56763328	T	C	0.00546	ARHGEF3	-	FALSE
chr1	33068221	A	G	0.00448	ZBTB8A	+	TRUE	AluY	SINE,Alu
chr1	120611964	G	C	0.00130	NOTCH2	-	FALSE
chr1	169824104	G	A	0.00744	SCYL3	-	FALSE
chr8	144357992	A	G	0.00780	GLI4	+	FALSE
chr3	156259317	T	C	0.00189	SSR3	-	TRUE	AluSq2	SINE,Alu
chr1	9643054	A	G	5.80579E-05		.	FALSE	AluSx	SINE,Alu
chr3	167727417	C	T	2.31470E-08	GOLIM4	-	FALSE
chr2	232319583	C	A	0.00801	NCL	-	FALSE	A-rich	SINE,Alu
chr3	124948049	T	C	0.00709	ZNF148	-	TRUE
chr13	99056476	A	T	0.00535	FARP1	+	FALSE
chr2	37429737	A	G	0.00549	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	182356399	A	G	0.00740	GLUL	-	FALSE
chr1	11347150	C	A	0.00016	UBIAD1	+	FALSE
chr7	11148863	T	A	0.00455	PHF14	+	FALSE
chr19	9673113	T	C	0.00330		.	FALSE	AluSx3	SINE,Alu
chr1	16893721	A	C	0.00043	NBPF1	-	FALSE
chr1	92862836	A	G	0.00430		.	FALSE	AluJr	SINE,Alu
chr2	204301754	C	G	0.00012	RAPH1	-	FALSE
chr1	10221287	A	G	0.00961	UBE4B	+	FALSE
chr13	21547676	T	C	0.00403	LATS2	-	FALSE
chr2	24225006	A	G	0.00277		.	FALSE	AluSx	SINE,Alu
chr1	16921146	T	C	0.00353	NBPF1	-	FALSE
chr2	204162277	A	G	0.00097	CYP20A1	+	TRUE	AluSx	SINE,Alu
chr2	128602455	T	C	0.00632		.	FALSE	AluSq2	SINE,Alu
chr6	26368938	C	T	0.00121	BTN3A2	+	FALSE
chr3	196728813	C	T	0.00068	MELTF	-	FALSE
chr1	179041705	A	T	0.00068	FAM20B	+	FALSE
chr1	10042988	A	G	0.00095	NMNAT1	+	TRUE	AluSc	SINE,Alu
chrX	102613351	A	G	0.00969	TCEAL9	+	FALSE	L1ME4a	SINE,Alu
chr7	17384440	A	G	0.00271	AHR	+	TRUE	AluSx	SINE,Alu
chr13	32973012	A	C	0.00231	BRCA2	+	FALSE
chr7	2473761	T	C	0.00126	CHST12	+	FALSE	(CCGC)n	SINE,Alu
chr1	24864008	A	G	0.00601		.	FALSE
chr4	2517223	A	G	2.74855E-08	RNF4	+	FALSE
chr5	180663940	A	G	0.00331	RACK1	-	FALSE
chr1	44171144	T	A	0.00108	KDM4A-AS1,KDM4A	+,-	FALSE
chr1	92975244	T	A	0.00220	EVI5	-	FALSE
chr1	138156	G	T	0.00413	LOC729737	-	FALSE
chr1	234744480	G	A	0.00237	IRF2BP2	-	FALSE
chr2	37429733	A	G	0.00381	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	173863209	G	A	0.00156		.	FALSE
chr4	39551087	T	C	0.00263	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr5	178986978	C	G	0.00341	RUFY1	+	FALSE
chr1	161932324	A	G	0.00056	ATF6	+	FALSE
chr1	28826130	A	G	1.79185E-05	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	1344749	A	G	0.00307		.	FALSE	AluSx1	SINE,Alu
chr1	114940210	T	G	0.00028	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	33148225	A	G	0.00031	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	93803490	T	C	0.00572	CCDC18-AS1	-	FALSE	AluJr	SINE,Alu
chr7	17384393	A	G	1.74996E-06	AHR	+	TRUE	AluSx	SINE,Alu
chr12	133297966	A	G	0.00000	PGAM5	+	FALSE	AluJo	SINE,Alu
chr1	145282904	A	G	0.00542	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr2	11966317	T	C	0.00011	LPIN1	+	FALSE
chr1	180082720	G	A	0.00577	CEP350	+	FALSE
chr22	18571431	A	G	0.00158	PEX26	+	TRUE	AluSz	SINE,Alu
chr1	95362949	A	T	0.00012	CNN3	-	FALSE	(A)n	SINE,Alu
chr11	4159457	A	G	0.00764	RRM1	+	FALSE
chr5	34906750	T	C	0.00527	RAD1	-	TRUE	AluJo	SINE,Alu
chr7	123390058	A	G	0.00102		.	FALSE
chr2	217366919	A	G	0.00480		.	FALSE	AluSz6	SINE,Alu
chr1	35646125	C	T	0.00027	SFPQ	-	FALSE
chr3	45722381	A	G	0.00996	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr1	179044100	A	G	0.00897	FAM20B	+	TRUE	AluSx	SINE,Alu
chr11	94801633	A	T	0.00808	SRSF8	+	FALSE
chr10	15120279	T	C	0.00255	ACBD7	-	TRUE	L1PA7	SINE,Alu
chr1	229439639	T	A	0.00276	RAB4A	+	FALSE
chr1	185069561	A	G	0.00675	RNF2	+	FALSE
chr3	65341374	T	A	0.00029	MAGI1	-	FALSE
chr1	144595943	A	G	0.00050	NBPF20	+	FALSE	AluJb	SINE,Alu
chr3	195451488	C	T	1.73907E-06	MUC20	+	FALSE
chr1	26774224	A	G	0.00295	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr1	156163906	C	T	0.00130	SLC25A44	+	FALSE
chr1	16932809	C	T	0.00887	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr2	219460472	T	C	0.00187	CNOT9	+	FALSE
chr2	71376999	G	A	0.00546	MPHOSPH10	+	FALSE
chr2	180810264	A	T	1.24157E-05	CWC22	-	FALSE
chr1	32372387	A	C	0.00757	PTP4A2	-	FALSE	(CA)n	SINE,Alu
chr1	1594977	T	C	0.00075	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr19	13884422	A	G	0.00878	MRI1	+	TRUE	AluJr	SINE,Alu
chr1	109816293	G	C	0.00759	CELSR2	+	FALSE
chr1	16893841	C	T	0.00272	NBPF1	-	FALSE
chr1	10517527	T	C	0.00430		.	FALSE	AluSx1	SINE,Alu
chr1	1721936	G	A	0.00731	GNB1	-	FALSE
chr1	46076481	A	G	0.00144	NASP	+	TRUE	AluSx	SINE,Alu
chr1	28835934	A	G	3.31538E-06	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	1595540	T	C	0.00830	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr2	217366933	C	T	2.15691E-05		.	FALSE	AluSz6	SINE,Alu
chr5	61683960	A	G	0.00491		.	FALSE
chr6	26095642	A	G	0.00332		.	FALSE	AluY	SINE,Alu
chr1	205683408	C	T	0.00082	NUCKS1	-	FALSE
chr1	46075709	A	G	0.00431	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	225683182	C	T	0.00056	ENAH	-	FALSE
chr2	204162036	A	G	0.00369	CYP20A1	+	TRUE	AluSx	SINE,Alu
chr1	1251847	T	C	0.00999	CPSF3L	-	FALSE	AluSq2	SINE,Alu
chr2	54896390	G	T	0.00110	SPTBN1	+	FALSE
chr1	179326418	A	G	0.00626	SOAT1	+	TRUE	AluSg	SINE,Alu
chr1	52381354	G	T	0.00157	RAB3B	-	FALSE
chr5	37288767	T	C	0.00928		.	FALSE	FLAM_C	SINE,Alu
chr15	44055281	T	C	0.00580	PDIA3	+	FALSE
chr12	123346997	G	C	0.00275	HIP1R	+	FALSE
chr2	85824712	C	A	0.00663	RNF181	+	FALSE
chr16	68962	C	T	0.00852		.	FALSE
chr19	3465142	T	C	0.00100	NFIC	+	FALSE
chr1	8045340	C	A	0.00217	PARK7	+	FALSE
chr1	144922583	G	A	0.00101	NBPF20,PDE4DIP	+,-	FALSE
chr1	74672474	G	A	0.00292	FPGT-TNNI3K,FPGT	+	FALSE	X12_DNA	SINE,Alu
chr1	788795	T	G	0.00333	LINC01128	+	FALSE	Charlie19a	SINE,Alu
chr1	46078630	A	G	4.65755E-11	NASP	+	FALSE
chr1	234744480	G	A	0.00409	IRF2BP2	-	FALSE
chr1	145513114	A	G	0.00033	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	36068166	T	C	0.00686	PSMB2	-	TRUE	AluSc	SINE,Alu
chr3	124732406	C	A	0.00975	HEG1	-	FALSE
chr1	162752670	G	A	0.00594		.	FALSE
chr1	1419130	A	G	0.00685	ATAD3B	+	FALSE	AluSz	SINE,Alu
chr12	96661613	A	G	0.00183	ELK3	+	FALSE
chr1	899810	G	A	3.12519E-10	KLHL17	+	FALSE
chr1	33145989	A	T	0.00548	SYNC,RBBP4	+,-	FALSE
chr3	195415493	C	T	0.00126	LINC00969,SDHAP2	+	FALSE	L1ME2	SINE,Alu
chr21	34729931	A	G	0.00040	IFNAR1	+	TRUE	AluSg7	SINE,Alu
chr3	37031951	G	A	0.00154	EPM2AIP1	-	FALSE	(A)n	SINE,Alu
chr1	10518733	T	C	0.00399		.	FALSE	AluSx1	SINE,Alu
chr1	145273345	T	C	0.00640	NBPF20,NOTCH2NL	+	FALSE
chr1	10520888	C	T	0.00960	DFFA	-	FALSE
chr4	190873405	C	T	0.00325	FRG1	+	FALSE
chr1	1337734	C	T	3.46713E-05	MRPL20	-	FALSE
chr1	10520692	T	C	0.00973	DFFA	-	TRUE	AluSc8	SINE,Alu
chr11	76733945	A	T	0.00931	ACER3	+	FALSE	A-rich	SINE,Alu
chr1	91990450	A	T	0.00405	CDC7	+	FALSE	LFSINE_Vert	SINE,Alu
chr1	117910682	G	A	0.00013	MAN1A2	+	FALSE
chr19	39433138	G	A	0.00276	FBXO17	-	FALSE	AluJb	SINE,Alu
chr2	88895123	T	C	0.00706	EIF2AK3	-	FALSE
chr1	40537924	G	A	0.00245	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	36642420	T	C	0.00358	MAP7D1	+	FALSE
chr1	19934900	G	A	0.00605	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr2	20424655	G	A	0.00193	SDC1	-	FALSE
chr1	16259813	A	G	0.00475	SPEN	+	FALSE
chr1	87573331	T	C	0.00699	HS2ST1	+	FALSE	(AT)n	SINE,Alu
chr2	10198113	C	A	0.00893	CYS1	-	FALSE
chr1	145689717	A	G	0.00696	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr2	99772813	A	G	1.48642E-06	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr1	185069687	C	T	0.00072	RNF2	+	FALSE
chr1	138156	G	T	0.00140	LOC729737	-	FALSE
chr1	145511998	A	G	0.00715	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr2	72968438	G	T	0.00147	EXOC6B	-	FALSE
chr7	299843	G	A	6.16222E-05	FAM20C	+	FALSE
chr4	71682381	T	C	0.00037	GRSF1	-	TRUE	AluSz6	SINE,Alu
chr1	207943211	G	A	0.00248	CD46	+	FALSE	AluSx1	SINE,Alu
chr1	6283264	T	C	0.00521	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	54692334	T	C	0.00021	SSBP3	-	FALSE	(T)n	SINE,Alu
chr19	39433141	A	G	0.00224	FBXO17	-	FALSE	AluJb	SINE,Alu
chr15	91044385	G	T	0.00440	IQGAP1	+	FALSE
chr3	101542436	A	G	0.00023	NXPE3	+	TRUE	AluJr	SINE,Alu
chr2	206983491	T	C	0.00505		.	FALSE	AluSx	SINE,Alu
chr1	32799434	C	T	0.00227	MARCKSL1	-	FALSE
chr1	19542458	T	C	6.76498E-05	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	1549354	G	A	0.00383		.	FALSE	HAL1	SINE,Alu
chr2	234386018	A	G	0.00299	USP40	-	FALSE
chr1	6259433	G	A	0.00522	RPL22	-	FALSE	G-rich	SINE,Alu
chr7	22983890	T	C	0.00097	FAM126A	-	FALSE
chr5	37290335	T	C	1.49367E-06		.	FALSE	AluSz	SINE,Alu
chr5	125961166	A	G	0.00732	PHAX	+	TRUE	AluSz	SINE,Alu
chr1	8931947	T	C	0.00059	ENO1	-	FALSE
chr1	145116142	A	T	0.00570	NBPF20,SEC22B	+	FALSE
chr2	208619461	A	G	2.24939E-05	CCNYL1	+	TRUE	FAM	SINE,Alu
chr1	142803764	C	T	1.49403E-06		.	FALSE	MIRb	SINE,Alu
chr1	223178477	C	T	0.00519	DISP1	+	FALSE
chr1	19586501	A	G	0.00055	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	16841972	G	A	1.76809E-05		.	FALSE	MER41E	SINE,Alu
chr1	10521238	T	C	0.00173	DFFA	-	TRUE	AluY	SINE,Alu
chr5	125961204	A	G	0.00196	PHAX	+	TRUE	AluSz	SINE,Alu
chr3	10192709	C	T	0.00082	VHL	+	FALSE	AluSx1	SINE,Alu
chr1	36068364	T	C	0.00195	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	1597423	C	T	1.10134E-13	CDK11B,SLC35E2B	-	FALSE
chr3	44791293	A	T	0.00031	KIAA1143	-	FALSE	AluJr	SINE,Alu
chr1	19586520	A	G	0.00305	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	36067760	T	C	0.00044	PSMB2	-	TRUE	AluSz	SINE,Alu
chr16	10623543	T	C	0.00025	EMP2	-	TRUE	AluSp	SINE,Alu
chr5	154194456	G	C	0.00831	LARP1	+	FALSE
chr2	37329300	T	C	0.00590		.	FALSE	AluJr4	SINE,Alu
chr3	41281407	G	T	0.00288	CTNNB1	+	FALSE
chr1	109746601	A	G	0.00024	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	77166017	G	A	0.00146		.	FALSE
chr3	10005392	T	C	8.76084E-06	EMC3	-	FALSE	AluSg7	SINE,Alu
chr15	64657530	T	C	0.00580	KIAA0101	-	TRUE	FLAM_C	SINE,Alu
chr2	217366192	T	A	0.00067		.	FALSE
chr1	31902343	T	C	1.48709E-05	SERINC2	+	FALSE
chr1	3703611	A	C	0.00208	LRRC47	-	FALSE
chr3	179117242	T	C	0.00011	GNB4	-	TRUE	AluSz	SINE,Alu
chr1	97543764	C	T	0.00901	DPYD	-	FALSE
chr2	74090062	T	G	0.00248	STAMBP	+	FALSE
chr13	79188534	T	A	0.00698	RNF219-AS1,RNF219	+,-	FALSE
chr2	198368110	C	A	0.00053	HSPE1,HSPE1-MOB4	+	FALSE
chr1	95123291	G	C	0.00040	LINC01057	-	FALSE	LTR7Y	SINE,Alu
chr2	86249961	T	C	0.00262	LOC90784	-	TRUE	AluJr	SINE,Alu

RBP	EXOSC9
Knock-Method	shRNA
RBP Family	RNase_PH
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR597IYB
Platform	HiSeq
Pubmed ID	32252787

EXOSC9 - Target Gene Network