Dataset Overview
RBP
HNRNPM
Knock-Method
shRNA
RBP Family
RRM_1
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR995JMS
Platform
HiSeq
Pubmed ID
32252787
HNRNPM - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of HNRNPM
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
10.57
4.13
-1.51552
1.69692E-25
3.06249E-24
A1CF
32.44
22.8
-0.30092
3.85708E-08
1.75094E-07
A2M
2405.22
1933.82
-0.50798
2.71755E-25
4.83246E-24
A4GALT
0.67
1.38
0.75705
0.00434
0.00898
AAAS
23.87
30.8
0.30142
1.49658E-05
4.86052E-05
AACS
11.23
8.3
-0.50910
3.17570E-12
2.25345E-11
AADAT
6.54
14.91
0.91475
1.30923E-23
2.16617E-22
AAED1
4.91
3.48
-0.36366
0.00118
0.00274
AAGAB
8.11
13.75
0.67144
8.62817E-20
1.10392E-18
AAK1
3.76
5.42
0.56464
2.99044E-08
1.37819E-07
Showing 1 to 10 of 8,274 entries
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Function Analysis of Target Genes of HNRNPM
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC6
16249648_16249711_16248729_16248888_16251519_16251666
0.00384
-0.138
DataSet_01_414
View details
ACADSB
124797262_124797363_124793871_124794031_124799981_124800173
0.00102
-0.05
DataSet_01_414
View details
ACLY
40052872_40052902_40049285_40049427_40054001_40054092
0.00000
0.156
DataSet_01_414
View details
ACSL3
223765391_223765498_223725651_223725976_223773450_223773754
0.00008
-0.109
DataSet_01_414
View details
ACSL3
223752547_223752606_223725651_223725976_223773450_223773868
0.00019
-0.054
DataSet_01_414
View details
ACSL4
108934231_108934360_108926364_108926601_108939372_108939425
0.00019
0.099
DataSet_01_414
View details
ADD3
111892062_111892158_111890120_111890244_111893083_111893969
0.00000
0.393
DataSet_01_414
View details
AFP
74310709_74310839_74309063_74309161_74315051_74315184
0.00000
0.02
DataSet_01_414
View details
AFP
74313178_74313393_74309067_74309161_74315051_74315184
0.00000
0.017
DataSet_01_414
View details
AFP
74320952_74321007_74319481_74319614_74321347_74321891
0.00168
0.006
DataSet_01_414
View details
Showing 1 to 10 of 189 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9265955_9266022_9266048_9266139_9264972_9265132
0.00000
-0.239
DataSet_01_414
View details
A2M
9231839_9231927_9232234_9232411_9230296_9230453
0.00001
0.095
DataSet_01_414
View details
AGT
230841678_230841946_230845740_230846599_230839938_230840083
0.00145
0.232
DataSet_01_414
View details
AHSG
186336079_186336280_186336358_186336426_186334975_186335139
0.00000
-0.214
DataSet_01_414
View details
AHSG
186336358_186336426_186337645_186337729_186334975_186335139
0.00065
0.489
DataSet_01_414
View details
AHSG
186336079_186336284_186336324_186336426_186334975_186335139
0.00306
0.006
DataSet_01_414
View details
AHSG
186336079_186336280_186336300_186336426_186334975_186335139
0.00517
-0.078
DataSet_01_414
View details
AHSG
186336079_186336284_186336300_186336426_186334975_186335139
0.00665
0.007
DataSet_01_414
View details
AHSG
186336079_186336280_186336300_186336426_186334975_186335139
0.00965
-0.008
DataSet_01_414
View details
ALB
74275071_74275140_74275140_74275204_74274354_74274522
0.00030
-0.093
DataSet_01_414
View details
Showing 1 to 10 of 81 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AHSG
186336079_186336284_186336079_186336280_186337645_186337729
0.00264
0.385
DataSet_01_414
View details
EIF4G2
10823207_10823756_10823595_10823756_10822496_10822634
0.00000
0.125
DataSet_01_414
View details
MAP4K4
102503549_102503723_102503549_102503699_102504239_102504399
0.00014
-0.057
DataSet_01_414
View details
MAT2A
85770023_85770166_85770023_85770157_85770792_85772403
0.00048
-0.104
DataSet_01_414
View details
PIGP
38445299_38445458_38445360_38445458_38444733_38444837
0.00552
-0.222
DataSet_01_414
View details
REPS1
139247537_139251235_139251113_139251235_139242173_139242261
0.00891
0.226
DataSet_01_414
View details
RPL41
56510558_56510714_56510558_56510583_56510972_56510995
0.00061
-0.011
DataSet_01_414
View details
RPL41
56510558_56510647_56510558_56510583_56510972_56510995
0.00310
-0.012
DataSet_01_414
View details
SULT2A1
48389378_48389654_48389439_48389654_48386833_48387042
0.00038
-0.157
DataSet_01_414
View details
Showing 1 to 9 of 9 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACSL4
108926364_108926781_108926364_108926601_108939372_108939425
0.00027
0.172
DataSet_01_414
View details
ACSL4
108926364_108926895_108926364_108926601_108939372_108939425
0.00112
0.16
DataSet_01_414
View details
ADSSL1
105205991_105206153_105206086_105206153_105205664_105205715
0.00941
0.146
DataSet_01_414
View details
APOA2
161192707_161192840_161192707_161192784_161193139_161193215
0.00377
0.007
DataSet_01_414
View details
APOA2
161192707_161193056_161192707_161192784_161193139_161193215
0.00121
0.021
DataSet_01_414
View details
APOA2
161193139_161193291_161193139_161193215_161193384_161193418
0.00435
0.095
DataSet_01_414
View details
EML4
42553184_42553392_42553293_42553392_42552606_42552694
0.00084
-0.014
DataSet_01_414
View details
FN1
216236631_216237098_216236631_216237023_216238044_216238134
0.00000
0.018
DataSet_01_414
View details
FN1
216236631_216237023_216236631_216236738_216238044_216238134
0.00031
0.026
DataSet_01_414
View details
FTH1
61732458_61732584_61732458_61732577_61732840_61732915
0.00401
0.014
DataSet_01_414
View details
Showing 1 to 10 of 18 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ANAPC5
121783641_121784808_121783641_121783834_121784698_121784808
0.00961
0.082
DataSet_01_414
View details
DAK
61109932_61110130_61109932_61109967_61110045_61110130
0.00336
0.04
DataSet_01_414
View details
FN1
216243852_216247048_216243852_216244040_216246934_216247048
0.00000
0.145
DataSet_01_414
View details
FTH1
61732458_61732987_61732458_61732577_61732840_61732987
0.00440
0.026
DataSet_01_414
View details
FTH1
61734783_61735103_61734783_61734843_61734929_61735103
0.00454
0.035
DataSet_01_414
View details
KDM3A
86709580_86711281_86709580_86709817_86711109_86711281
0.00964
0.061
DataSet_01_414
View details
SRRM2
2808988_2809173_2808988_2809048_2809140_2809173
0.00271
0.058
DataSet_01_414
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SRSF5
70235898_70237257_70235898_70235968_70237183_70237257
0.00642
-0.056
DataSet_01_414
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UBC
125396193_125398320_125396193_125397780_125398008_125398320
0.00414
0.02
DataSet_01_414
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
201846675
C
T
0.00145
IPO9
+
FALSE
chr1
47716042
A
T
0.00574
STIL
-
FALSE
chr1
153920564
A
G
0.00747
CRTC2
-
FALSE
chr1
45279898
C
T
0.00271
.
FALSE
(TCTT)n
SINE,Alu
chr1
31837516
G
C
5.10721E-05
ZCCHC17
+
FALSE
chr1
11084103
T
A
0.00968
TARDBP
+
FALSE
chr1
10519200
T
C
0.00059
.
FALSE
AluSx3
SINE,Alu
chr1
1431165
C
T
0.00392
ATAD3B
+
FALSE
chr1
10519946
T
C
0.00033
.
FALSE
AluJr
SINE,Alu
chr1
33149495
A
G
0.00652
SYNC,RBBP4
+,-
FALSE
AluSx1
SINE,Alu
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression