RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr6	13790822	T	C	0.00885	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr1	201846675	C	T	0.00145	IPO9	+	FALSE
chr1	47716042	A	T	0.00574	STIL	-	FALSE
chr2	112252630	A	C	0.00040	MIR4435-2HG	-	FALSE
chr1	153920564	A	G	0.00747	CRTC2	-	FALSE
chr1	45279898	C	T	0.00271		.	FALSE	(TCTT)n	SINE,Alu
chr5	34906547	T	C	0.00051	RAD1	-	TRUE	AluJo	SINE,Alu
chr2	72403387	C	A	0.00486	EXOC6B	-	FALSE
chr1	31837516	G	C	5.10721E-05	ZCCHC17	+	FALSE
chr1	11084103	T	A	0.00968	TARDBP	+	FALSE
chr3	32567573	G	A	0.00320	DYNC1LI1	-	FALSE	(AT)n	SINE,Alu
chr1	10519200	T	C	0.00059		.	FALSE	AluSx3	SINE,Alu
chr3	15115284	G	A	0.00305	RBSN	-	FALSE
chr1	1431165	C	T	0.00392	ATAD3B	+	FALSE
chr1	10519946	T	C	0.00033		.	FALSE	AluJr	SINE,Alu
chr2	202031356	C	T	0.00247	CFLAR	+	FALSE	SVA_A	SINE,Alu
chr4	119555188	C	A	0.00205	LOC729218	+	FALSE
chr7	22983890	T	C	0.00097	FAM126A	-	FALSE
chr3	179117164	T	C	0.00234	GNB4	-	FALSE	AluSz	SINE,Alu
chr2	174090338	A	C	0.00250	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr2	74442407	A	G	0.00384	MTHFD2	+	FALSE
chr2	61764922	G	A	0.00268	XPO1	-	FALSE
chr2	10074384	G	A	0.00765	TAF1B	+	FALSE
chr2	37330507	T	C	9.86666E-05		.	FALSE	AluSq2	SINE,Alu
chr1	33149495	A	G	0.00652	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	144931101	G	A	0.00358	NBPF20,PDE4DIP	+,-	FALSE
chr1	120455441	A	G	0.00872	NOTCH2	-	FALSE
chr6	41567394	T	A	0.00717	FOXP4	+	FALSE
chr3	50686350	T	G	2.12445E-05	MAPKAPK3	+	FALSE
chr1	144922583	G	A	0.00101	NBPF20,PDE4DIP	+,-	FALSE
chr2	1637648	T	C	9.03854E-11	PXDN	-	FALSE
chr1	114306372	A	G	0.00243	RSBN1	-	FALSE
chr8	37351214	T	C	0.00109	LINC01605	-	FALSE
chr1	204526713	A	G	0.00078	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	111682307	G	C	0.00637	DRAM2,CEPT1	+,-	FALSE
chr1	247319707	C	T	3.10675E-05	ZNF124	-	FALSE
chr1	67874731	T	C	0.00125	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	19542239	T	C	0.00043	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	46828700	A	G	0.00093	NSUN4	+	FALSE
chr1	184762524	T	C	0.00778	FAM129A	-	TRUE	AluSz	SINE,Alu
chr1	6694226	C	T	0.00742	THAP3	+	FALSE
chr5	125961210	A	G	0.00966	PHAX	+	TRUE	AluSz	SINE,Alu
chr1	36067677	T	C	1.65353E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	28150601	A	T	0.00382	STX12	+	FALSE
chr17	73703945	C	T	0.00242	SAP30BP	+	FALSE	MIRc	SINE,Alu
chr1	26801731	G	T	0.00146	HMGN2	+	FALSE	(T)n	SINE,Alu
chr1	210416438	C	A	0.00085	SERTAD4	+	FALSE
chr1	19665310	C	T	0.00618	CAPZB	-	FALSE	(TTTCT)n	SINE,Alu
chr1	145693061	A	G	0.00158	NBPF20,NBPF10	+	TRUE	AluSz6	SINE,Alu
chr1	1595539	T	C	0.00053	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr4	152583924	A	T	0.00284	FAM160A1	+	FALSE
chr1	32799435	A	T	0.00515	MARCKSL1	-	FALSE
chr9	136209399	A	T	0.00011	MED22	-	FALSE
chr7	100031502	C	T	0.00091	MEPCE	+	FALSE
chr1	114443475	A	G	0.00538	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	26774224	A	G	0.00100	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr1	206566904	T	C	0.00322	SRGAP2	+	FALSE
chr15	45366812	A	G	0.00446	SORD	+	FALSE
chr12	10311392	T	C	0.00177	OLR1	-	FALSE
chr4	73923056	T	C	0.00077	COX18	-	TRUE	AluSz	SINE,Alu
chr4	152020779	G	T	0.00925	RPS3A	+	FALSE
chr2	99813003	A	G	0.00226	MRPL30	+	TRUE	AluJb	SINE,Alu
chr4	17802976	T	C	0.00146	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	46075171	A	C	0.00140	NASP	+	FALSE	A-rich	SINE,Alu
chr17	65335394	T	C	5.10125E-06	PSMD12	-	TRUE	AluSx	SINE,Alu
chr1	85785548	C	T	0.00220	DDAH1	-	FALSE
chr3	160969268	C	T	0.00375	NMD3	+	FALSE
chr4	57326291	A	G	0.00415	PAICS	+	TRUE	AluJr	SINE,Alu
chr7	22984967	A	G	0.00108	FAM126A	-	FALSE
chr16	10625406	T	C	1.26372E-11	EMP2	-	TRUE	AluSx	SINE,Alu
chr1	26143727	A	T	0.00602	SEPN1	+	FALSE	AluSx	SINE,Alu
chr2	128949255	A	G	0.00063	UGGT1	+	TRUE	AluSg	SINE,Alu
chr2	85772407	T	A	0.00232	GGCX	-	FALSE
chr3	100083427	T	A	0.00456	TOMM70	-	FALSE	FAM	SINE,Alu
chr3	44790772	T	C	0.00024	KIAA1143	-	TRUE	AluY	SINE,Alu
chr2	37075013	T	A	0.00754	STRN	-	FALSE
chr7	38764340	T	C	0.00630	VPS41	-	TRUE	AluSp	SINE,Alu
chr1	168169452	G	A	0.00600	TIPRL	+	FALSE
chr1	179326882	A	G	1.03454E-05	SOAT1	+	TRUE	AluJo	SINE,Alu
chr7	6202695	A	C	0.00013	CYTH3	-	FALSE
chr5	139931627	C	T	0.00073	SRA1	-	FALSE
chr2	73460315	C	T	0.00315	PRADC1	-	FALSE	(CGGCGC)n	SINE,Alu
chr17	48155425	G	A	0.00603	ITGA3	+	FALSE
chr1	46751578	T	G	0.00380	LRRC41	-	FALSE
chr15	30781885	C	T	0.00380		.	FALSE
chr18	28571649	A	T	0.00301	DSC3	-	FALSE	MER65C	SINE,Alu
chr6	111591610	A	G	0.00105		.	FALSE	FLAM_A	SINE,Alu
chr16	81064533	A	G	0.00686	CENPN	+	TRUE	AluSg	SINE,Alu
chr1	16952298	A	C	2.15086E-05	CROCCP2	-	FALSE
chr8	56985607	C	T	0.00085	RPS20	-	FALSE
chr19	24103987	A	G	1.84513E-07	ZNF726	+	TRUE	AluSg4	SINE,Alu
chr7	38764464	T	C	0.00193	VPS41	-	TRUE	AluSp	SINE,Alu
chr1	28825337	A	G	0.00191	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr7	36447346	G	A	0.00419	ANLN	+	FALSE
chr1	144828688	C	T	0.00024	NBPF20,NBPF9	+	FALSE
chr7	29960211	C	A	0.00034	SCRN1	-	FALSE
chr18	19445881	T	A	0.00224	MIB1	+	FALSE
chr1	67874270	G	A	0.00019	SERBP1	-	FALSE
chr3	42643425	G	A	0.00482	NKTR	+	FALSE	L2a	SINE,Alu
chr1	220232143	T	C	7.81076E-05	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr9	80888613	A	G	0.00904		.	FALSE	AluSx	SINE,Alu
chr1	11782984	A	G	0.00542		.	FALSE	AluSx	SINE,Alu
chr19	21474901	T	C	1.34658E-06	ZNF708	-	TRUE	AluSc	SINE,Alu
chr1	93603177	T	C	0.00364	MTF2	+	FALSE
chr2	61276758	A	G	0.00924	PEX13	+	TRUE	AluSp	SINE,Alu
chr1	36068325	T	C	0.00746	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	74442548	C	T	0.00721		.	FALSE
chr2	232319593	A	C	0.00348	NCL	-	FALSE	A-rich	SINE,Alu
chr2	29023121	G	T	0.00077	PPP1CB	+	FALSE
chr1	46075663	A	G	0.00013	NASP	+	TRUE	AluSx4	SINE,Alu
chr11	65179818	C	T	0.00799	FRMD8	+	FALSE
chr2	24522807	C	T	0.00079	ITSN2	-	FALSE
chr18	33831189	C	A	0.00763	MOCOS	+	FALSE
chr1	25894471	G	A	0.00778	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	46075719	A	G	0.00461	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	19586437	A	G	0.00056	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	155695960	A	G	1.11424E-05	DAP3	+	TRUE	AluSp	SINE,Alu
chr19	42731991	A	G	0.00598		.	FALSE	AluJr	SINE,Alu
chr1	19984104	A	C	0.00402	MINOS1-NBL1,NBL1	+	FALSE
chr12	32794600	A	C	5.34959E-05	FGD4	+	FALSE
chr8	30643549	G	C	0.00257	PPP2CB	-	FALSE
chr7	22983702	A	T	7.71363E-07	FAM126A	-	FALSE
chr1	63009329	T	G	0.00155	DOCK7	-	FALSE
chr12	98943214	A	G	4.64520E-05	TMPO	+	TRUE	AluSz	SINE,Alu
chr3	183547227	T	C	7.80232E-05	PARL	-	FALSE
chr5	64016339	C	T	6.96791E-06	SREK1IP1	-	FALSE
chr1	100656265	C	T	0.00318	DBT	-	FALSE
chr1	36316571	A	C	0.00893	AGO4	+	FALSE
chr5	149823786	C	T	0.00327		.	FALSE
chr1	144481235	A	G	1.18230E-05	NBPF20	+	FALSE
chr1	204525548	A	G	0.00501	MDM4	+	TRUE	AluSz	SINE,Alu
chr2	85773623	T	C	0.00203	GGCX	-	TRUE	AluSx1	SINE,Alu
chr1	1252468	T	C	0.00096	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr3	88103602	C	A	0.00284	CGGBP1	-	FALSE
chr1	109746601	A	G	0.00024	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	1209196	C	G	0.00581	UBE2J2	-	FALSE	(CCG)n	SINE,Alu
chr4	2940026	T	C	0.00046	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr2	176042865	G	T	0.00887	ATP5G3	-	FALSE
chr10	75008817	T	C	1.29877E-10	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	144598726	A	C	0.00325	NBPF20	+	FALSE
chr4	17804852	T	C	0.00600	DCAF16	-	TRUE	AluSx	SINE,Alu
chr2	183643905	A	T	0.00841	DNAJC10	+	FALSE
chr16	75479891	T	C	9.48885E-06	TMEM170A	-	TRUE	AluSg4	SINE,Alu
chr1	204526795	A	G	0.00199	MDM4	+	TRUE	AluSx	SINE,Alu
chr12	56510710	A	C	0.00050	RPL41	+	FALSE
chr1	1459332	G	A	1.33172E-08	ATAD3A	+	FALSE
chr1	110566328	A	T	0.00515	AHCYL1	+	FALSE
chr3	172115476	A	G	0.00892	FNDC3B	+	FALSE	(A)n	SINE,Alu
chr2	206987634	T	C	0.00281		.	FALSE	AluJb	SINE,Alu
chr5	174956493	T	A	0.00466	SFXN1	+	FALSE
chr1	6283434	T	C	0.00285	ICMT	-	TRUE	AluSx3	SINE,Alu
chr19	23542157	T	C	0.00140	ZNF91	-	TRUE	AluY	SINE,Alu
chr1	39470978	T	A	0.00378	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr1	200521297	C	T	0.00133	KIF14	-	FALSE	(T)n	SINE,Alu
chr2	37331753	T	C	0.00026		.	FALSE	AluJb	SINE,Alu
chr1	12164538	G	A	8.95385E-07	TNFRSF8	+	FALSE
chr1	154557184	G	A	0.00558	ADAR	-	FALSE	A-rich	SINE,Alu
chr1	28826250	A	G	0.00489	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr2	74442550	A	T	0.00826		.	FALSE
chr1	45976147	G	A	0.00476	MMACHC	+	FALSE	AluJr	SINE,Alu
chr1	6283305	T	C	0.00496	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	35817022	T	A	0.00072	ZMYM4	+	FALSE
chr1	20826786	T	A	0.00030	MUL1	-	FALSE
chr1	1018144	T	C	0.00019	C1orf159	-	FALSE
chr1	1152309	A	T	0.00035	SDF4	-	FALSE
chr3	37407769	A	T	0.00406	GOLGA4	+	FALSE
chr1	54691922	T	A	0.00067	SSBP3	-	FALSE
chr8	37613073	A	C	0.00394	ERLIN2	+	FALSE	(CCCCCAC)n	SINE,Alu
chr2	37429627	A	G	0.00027	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr2	128951904	A	G	0.00444	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr1	52381350	T	G	4.39398E-08	RAB3B	-	FALSE
chr17	40723650	A	T	0.00250	MLX	+	FALSE
chr1	26802457	C	A	0.00962	HMGN2	+	FALSE
chr17	76117147	G	A	0.00606	TMC6	-	FALSE
chr16	57505656	T	G	0.00107	POLR2C	+	FALSE	(GGTGGG)n	SINE,Alu
chr1	1534205	G	A	1.69659E-11	FNDC10	-	FALSE
chr3	196670094	G	C	0.00669	NCBP2-AS2	+	FALSE
chr15	90820068	A	G	0.00194		.	FALSE	AluY	SINE,Alu
chr1	28060574	A	G	0.00206	FAM76A	+	FALSE
chr1	45671429	G	A	0.00054	ZSWIM5	-	FALSE
chr1	10520439	T	C	0.00293		.	FALSE	AluSx1	SINE,Alu
chr1	19585493	A	G	3.52757E-05	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr5	109204057	T	A	0.00614	MAN2A1	+	FALSE
chr1	9331254	A	G	0.00793	H6PD	+	TRUE	AluSx	SINE,Alu
chr1	6582558	T	C	0.00030	NOL9	-	TRUE	AluSx1	SINE,Alu
chr2	74645427	A	G	0.00011	C2orf81	-	FALSE
chr1	1634860	G	T	0.00103	CDK11B,CDK11A	-	FALSE
chr1	1650787	T	C	0.00426	CDK11B,CDK11A	-	FALSE
chr1	206566948	G	A	0.00228	SRGAP2	+	FALSE
chr1	46075724	A	G	1.14407E-05	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	84373309	T	C	0.00627	TTLL7	-	FALSE
chr1	150048520	C	T	0.00089	VPS45	+	FALSE
chr1	33219771	G	C	0.00256	KIAA1522	+	FALSE
chr1	19543364	T	C	0.00447	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr4	56236845	A	G	6.76031E-06	SRD5A3,SRD5A3-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	100547854	T	G	0.00080	MFSD14A	+	FALSE
chr2	1636938	C	T	0.00072	PXDN	-	FALSE	(T)n	SINE,Alu
chr1	23519504	T	A	3.21384E-05	HTR1D	-	FALSE
chr1	36602178	A	T	0.00764	TRAPPC3	-	FALSE
chr1	45244053	A	G	0.00202	RPS8	+	FALSE
chr5	96366326	G	C	0.00120		.	FALSE	(TG)n	SINE,Alu
chr1	230416410	G	T	0.00516	GALNT2	+	FALSE
chr1	26901090	C	T	0.00056	RPS6KA1	+	FALSE
chr2	207027628	A	G	2.96026E-05	EEF1B2	+	FALSE
chr1	19984098	C	G	0.00826	MINOS1-NBL1,NBL1	+	FALSE
chr1	3753136	A	T	0.00088	CEP104	-	FALSE
chr3	45748599	T	A	0.00470	SACM1L	+	FALSE
chr1	16892918	T	C	0.00590	NBPF1	-	FALSE
chr1	172547465	A	G	0.00725	SUCO	+	FALSE
chr1	173864944	G	T	0.00415		.	FALSE
chr1	26144435	C	G	0.00131	SEPN1	+	FALSE
chr6	47592330	T	A	0.00830	CD2AP	+	FALSE
chr3	48784500	T	A	0.00264	PRKAR2A	-	FALSE	(T)n	SINE,Alu
chr3	178740415	G	A	0.00227	ZMAT3	-	FALSE
chr1	109535088	G	A	0.00353	WDR47	-	FALSE

RBP	HNRNPM
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR995JMS
Platform	HiSeq
Pubmed ID	32252787

HNRNPM - Target Gene Network