RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	145281543	C	T	0.00028	NBPF20,NOTCH2NL	+	FALSE
chr1	19542456	T	C	0.00193	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	9163110	T	C	0.00103		.	FALSE	FRAM	SINE,Alu
chr1	36068369	T	C	0.00207	PSMB2	-	TRUE	AluSc	SINE,Alu
chr14	75202963	A	G	2.20276E-06	FCF1	+	TRUE	AluSx	SINE,Alu
chr1	89447856	A	G	0.00465	KYAT3,RBMXL1	-	FALSE
chr6	42048128	G	T	0.00604	TAF8	+	FALSE	AluSq2	SINE,Alu
chr4	6644391	G	A	0.00000	MRFAP1	+	FALSE
chr1	213069114	C	A	0.00681	FLVCR1	+	FALSE
chr3	124686323	A	T	0.00146	HEG1	-	FALSE
chr7	2274221	T	C	0.00579	MRM2	-	TRUE	AluJr	SINE,Alu
chr1	10517538	T	C	0.00840		.	FALSE	AluSx1	SINE,Alu
chr2	170403030	T	C	0.00294	FASTKD1	-	FALSE
chr1	10519932	T	C	0.00547		.	FALSE	AluJr	SINE,Alu
chr1	214524509	A	G	0.00471	PTPN14	-	FALSE	AluSg	SINE,Alu
chr4	165998654	T	C	0.00564	TMEM192	-	TRUE	AluSg	SINE,Alu
chr9	130209956	A	T	0.00221	RPL12	-	FALSE
chr1	145303971	A	G	0.00060	NBPF20,NBPF10	+	FALSE
chr20	46284868	A	T	0.00681	NCOA3	+	FALSE
chr3	51738256	A	G	0.00312	TEX264	+	FALSE
chr4	187628394	G	A	0.00000	FAT1	-	FALSE
chr1	10519112	T	C	0.00333		.	FALSE	AluSx3	SINE,Alu
chr1	100490275	A	G	0.00748	SLC35A3	+	TRUE	AluSc5	SINE,Alu
chr1	16919961	C	T	0.00133	NBPF1	-	FALSE
chr7	128143289	A	G	0.00082		.	FALSE	AluSc8	SINE,Alu
chr1	53359181	A	G	0.00699	ZYG11A	+	TRUE	AluSx	SINE,Alu
chr19	47278340	A	G	0.00449	SLC1A5	-	FALSE	(AC)n	SINE,Alu
chr7	91630349	T	A	0.00111	AKAP9	+	FALSE
chr5	76728039	T	G	0.00092	WDR41	-	FALSE
chr17	57279167	A	G	0.00071	PRR11	+	TRUE	AluSq2	SINE,Alu
chr4	38937372	T	C	0.00388	FAM114A1	+	FALSE
chr1	28836973	A	G	0.00017	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr10	116603648	A	G	0.00267	FAM160B1	+	FALSE
chr7	17384334	A	G	0.00013	AHR	+	TRUE	AluSx	SINE,Alu
chr2	206983075	T	C	0.00083		.	FALSE	AluJb	SINE,Alu
chr7	22984967	A	G	0.00108	FAM126A	-	FALSE
chr2	69690885	T	C	0.00970	AAK1	-	TRUE	AluSx3	SINE,Alu
chr12	125511312	A	G	0.00638	THRIL	-	FALSE	AluSx1	SINE,Alu
chr11	769883	T	C	0.00631	PDDC1	-	TRUE	AluY	SINE,Alu
chr1	178887208	A	T	0.00239	RALGPS2	+	FALSE
chr4	7761286	T	C	8.48634E-10	AFAP1,AFAP1-AS1	+,-	FALSE
chr19	44418680	G	C	0.00066	ZNF45	-	FALSE
chr12	100556267	T	C	0.00071	GOLGA2P5	-	FALSE
chr4	17804847	T	C	0.00306	DCAF16	-	TRUE	AluSx	SINE,Alu
chr1	16893763	T	C	0.00159	NBPF1	-	FALSE
chr1	179044181	A	G	0.00790	FAM20B	+	TRUE	AluSx	SINE,Alu
chr2	233744021	G	A	0.00460	NGEF	-	FALSE
chr19	18477337	A	G	0.00085	PGPEP1	+	TRUE	AluSx1	SINE,Alu
chr1	155030557	A	C	0.00883	LOC100505666,ADAM15	+,-	FALSE
chr3	48787011	T	C	0.00040	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	144902696	A	T	0.00997	NBPF20,PDE4DIP	+,-	FALSE
chr4	84215880	T	C	4.10546E-05	HPSE	-	TRUE	AluJr	SINE,Alu
chr1	19543353	T	C	0.00036	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	1252468	T	C	0.00096	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr1	242012149	C	T	0.00510	EXO1	+	FALSE
chr1	175126524	T	C	0.00901	KIAA0040	-	FALSE
chr2	131104524	G	A	0.00912	IMP4	+	FALSE	L1MA9	SINE,Alu
chr1	66838733	A	C	0.00086	PDE4B	+	FALSE
chr1	28825830	A	G	0.00549	PHACTR4	+	TRUE	AluSp	SINE,Alu
chr17	42225547	A	C	0.00240	C17orf53	+	FALSE
chr3	14986098	T	C	3.23580E-05	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	33148196	A	G	0.00756	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr10	100177984	C	T	6.55965E-05	HPS1	-	FALSE
chr14	75202512	A	G	0.00053	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	247319705	T	G	6.58458E-05	ZNF124	-	FALSE
chr1	11181327	C	T	0.00573	MTOR	-	FALSE
chr1	10043527	A	G	0.00811	NMNAT1	+	TRUE	AluSx3	SINE,Alu
chr1	148003749	T	C	0.00517	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr1	10043504	A	G	0.00213	NMNAT1	+	FALSE	AluSx3	SINE,Alu
chr1	179044100	A	G	0.00081	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	46075187	A	C	0.00024	NASP	+	FALSE	A-rich	SINE,Alu
chr6	160211652	C	G	0.00719	MRPL18	+	FALSE
chr8	41399722	A	G	0.00065	LOC102723729,GINS4	+,-	FALSE	AluSx3	SINE,Alu
chr2	206862015	G	A	0.00368	INO80D	-	FALSE
chr4	177251328	C	T	9.41230E-05	SPCS3	+	FALSE
chr17	61909370	G	A	0.00152	PSMC5	+	FALSE
chr1	156495520	T	A	0.00048	IQGAP3	-	FALSE
chr1	27992800	C	A	0.00011	IFI6	-	FALSE	FAM	SINE,Alu
chr20	35520229	T	C	3.77169E-05	TLDC2,SAMHD1	+,-	FALSE	AluSx3	SINE,Alu
chr20	43707842	A	G	0.00100	STK4	+	TRUE	AluJb	SINE,Alu
chr1	27205359	T	C	0.00301		.	FALSE	AluSc	SINE,Alu
chr5	96498783	G	A	0.00056	RIOK2	-	FALSE
chr1	180991777	T	C	0.00629	STX6	-	FALSE
chr3	142776250	A	C	0.00926	U2SURP	+	FALSE
chr1	214525603	A	G	0.00047	PTPN14	-	FALSE
chr1	31838550	T	A	0.00595	FABP3	-	FALSE
chr1	120286837	A	G	0.00153	PHGDH	+	FALSE
chr2	98388810	G	T	6.24900E-05	TMEM131	-	FALSE
chr12	56510706	A	G	0.00053	RPL41	+	FALSE
chr1	169768080	C	A	0.00857	C1orf112	+	FALSE
chr2	223807817	A	C	0.00991	ACSL3	+	FALSE	(A)n	SINE,Alu
chr4	39552070	T	C	0.00068	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr8	100890423	C	A	0.00113	COX6C	-	FALSE
chr1	1255402	C	G	0.00333	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr20	3905907	A	G	0.00325	PANK2	+	TRUE	AluSx	SINE,Alu
chr2	101010082	G	C	0.00965	CHST10	-	FALSE
chr5	180682608	C	A	0.00144	CTC-338M12.4	+	FALSE
chr1	214557685	C	A	0.00205	PTPN14	-	FALSE
chr17	17971644	G	T	0.00154	GID4	+	FALSE
chr1	19585903	G	A	0.00522	MRTO4	+	FALSE	AluJr	SINE,Alu
chr1	118472382	G	T	0.00029	WDR3	+	FALSE
chr3	49395694	T	C	0.00074	GPX1	-	FALSE
chr1	109793319	C	T	0.00027	CELSR2	+	FALSE
chr1	10519982	T	C	0.00572		.	FALSE	AluJr	SINE,Alu
chr1	36299630	A	G	0.00828	AGO4	+	FALSE
chr1	117945042	G	A	0.00150	MAN1A2	+	FALSE
chr2	37334139	T	C	0.00146	EIF2AK2	-	TRUE	AluSz	SINE,Alu
chr7	152342999	T	C	0.00313		.	FALSE	FRAM	SINE,Alu
chr1	23240255	G	A	0.00873	EPHB2	+	FALSE
chr1	10519936	T	C	0.00072		.	FALSE	AluJr	SINE,Alu
chr3	139086995	C	A	0.00743	COPB2	-	FALSE
chr1	224380498	A	G	6.58460E-05	DEGS1	+	TRUE	AluSx	SINE,Alu
chr12	120899702	T	A	0.00967	GATC,SRSF9	+,-	FALSE
chr12	98942824	A	G	2.17067E-06	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	59120961	G	A	0.00383	MYSM1	-	FALSE
chr1	10517635	T	C	0.00124		.	FALSE	AluSx1	SINE,Alu
chr1	92862904	A	G	0.00279		.	FALSE	AluJr	SINE,Alu
chr1	160966376	T	C	0.00996	F11R	-	TRUE	AluSg	SINE,Alu
chr1	990773	C	T	0.00486	AGRN	+	FALSE
chr1	110049203	G	C	0.00530		.	FALSE
chr1	38174987	T	C	0.00350	CDCA8	+	FALSE
chr3	197611758	A	G	0.00958		.	FALSE	FLAM_C	SINE,Alu
chr1	36067838	T	C	0.00081	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	19953120	G	A	0.00024	MINOS1,MINOS1-NBL1	+	FALSE
chr1	206566948	G	A	0.00228	SRGAP2	+	FALSE
chr7	20177525	T	C	0.00052	MACC1,LOC101927668	-	TRUE	AluSx	SINE,Alu
chr1	39470995	A	C	0.00036	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr2	37333924	T	C	0.00298	EIF2AK2	-	FALSE	AluSz	SINE,Alu
chr2	68402152	T	C	0.00794	PNO1	+	FALSE
chr2	32532849	A	G	0.00909		.	FALSE	AluSx1	SINE,Alu
chr7	154796171	G	A	0.00066	PAXIP1-AS1	+	FALSE	AluSx3	SINE,Alu
chr5	256514	G	C	0.00198	SDHA	+	FALSE
chr4	152020780	C	T	0.00925	RPS3A	+	FALSE
chr1	32373563	G	A	0.00089	PTP4A2	-	FALSE
chr1	117530213	G	T	0.00256	PTGFRN	+	FALSE
chr1	206516261	C	T	0.00228	SRGAP2	+	FALSE
chr1	145369709	A	G	0.00073	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr2	86251114	T	C	0.00709		.	FALSE	AluSx	SINE,Alu
chr5	172396725	T	A	0.00014	RPL26L1	+	FALSE
chr1	9161365	T	C	4.68504E-05		.	FALSE	AluSx	SINE,Alu
chr2	54120820	G	A	0.00262	PSME4	-	FALSE
chr1	16889575	T	C	0.00467	NBPF1	-	TRUE
chr19	19791650	A	G	1.64958E-05	ZNF101	+	TRUE	AluSc	SINE,Alu
chr4	177252238	A	G	3.85736E-09	SPCS3	+	TRUE
chr1	112003958	T	A	0.00557	ATP5F1	+	FALSE	Helitron2Na_Mam	SINE,Alu
chr2	187544218	T	G	0.00796	ITGAV	+	FALSE
chr4	1066073	T	A	0.00387	RNF212	-	FALSE	L1MC1	SINE,Alu
chr2	99812843	A	G	0.00966	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	1337737	G	C	2.51903E-05	MRPL20	-	FALSE
chr1	19199221	C	T	0.00392	ALDH4A1	-	FALSE
chr3	42592874	T	C	9.28376E-05	SEC22C	-	FALSE	AluJr	SINE,Alu
chr16	66765441	G	T	4.44089E-16	DYNC1LI2	-	FALSE	L2c	SINE,Alu
chr8	23294732	C	T	0.00415	ENTPD4	-	FALSE
chr19	39433138	G	A	0.00276	FBXO17	-	FALSE	AluJb	SINE,Alu
chr3	69154081	G	A	0.00999	ARL6IP5	+	FALSE
chr1	33409693	G	A	0.00722	RNF19B	-	FALSE
chr1	36067760	T	C	0.00052	PSMB2	-	TRUE	AluSz	SINE,Alu
chr10	51613231	T	C	2.61914E-05	TIMM23B,TIMM23	+,-	FALSE
chr1	10521238	T	C	0.00797	DFFA	-	TRUE	AluY	SINE,Alu
chr1	93307479	C	A	0.00085	FAM69A,RPL5	+,-	FALSE
chr12	133298428	A	G	7.41792E-11	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	6694226	C	T	0.00742	THAP3	+	FALSE
chr1	45976723	T	C	0.00733	MMACHC,PRDX1	+,-	FALSE
chr5	134236206	A	G	0.00065	TXNDC15	+	TRUE	AluSq	SINE,Alu
chr8	56985612	G	T	0.00028	RPS20	-	FALSE
chr16	48386442	A	G	0.00824	LONP2,MIR5095	+	TRUE	AluSz6	SINE,Alu
chr6	111348022	A	T	2.41155E-06	RPF2	+	FALSE
chr1	70718273	A	T	0.00256		.	FALSE
chr1	28826085	A	G	0.00196	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr12	109039869	T	C	0.00795	CORO1C	-	FALSE
chrX	77083723	T	C	0.00163	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr3	196046746	T	C	0.00513	TM4SF19-TCTEX1D2,TM4SF19-AS1	+,-	FALSE	AluSc5	SINE,Alu
chr1	95363041	C	T	0.00105	CNN3	-	FALSE
chr1	16133987	T	C	0.00830	UQCRHL	-	FALSE
chr3	86991598	G	T	0.00179	VGLL3	-	FALSE
chr1	15896984	A	G	0.00297	DNAJC16	+	FALSE	FLAM_C	SINE,Alu
chr1	158066834	A	G	0.00609	KIRREL	+	FALSE
chr11	18552269	T	A	0.00066		.	FALSE	AluJr	SINE,Alu
chr1	160302244	T	C	0.00310	COPA	-	TRUE
chr1	16910172	G	A	0.00023	NBPF1	-	FALSE
chr1	9161179	T	C	0.00570		.	FALSE	AluSx	SINE,Alu
chr1	26755229	A	G	0.00318	LIN28A	+	FALSE	AluSx1	SINE,Alu
chr3	45721891	A	G	0.00163	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	46076468	A	G	0.00069	NASP	+	TRUE	AluSx	SINE,Alu
chr1	6282400	T	C	0.00385	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	9416574	A	G	0.00144	SPSB1	+	FALSE
chr1	109818151	T	C	0.00855	CELSR2	+	FALSE
chr1	228881129	A	G	0.00199	RHOU	+	FALSE
chr3	45721874	A	G	0.00314	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr7	100278998	C	A	0.00022	GIGYF1	-	FALSE	(A)n	SINE,Alu
chr1	15990929	C	A	0.00202		.	FALSE	AluSx3	SINE,Alu
chr1	28826118	A	G	0.00175	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr3	113370193	C	T	4.09251E-05	USF3	-	FALSE	UCON34	SINE,Alu
chr2	20818517	T	C	0.00748	HS1BP3	-	FALSE
chr11	65764470	T	C	0.00435	EIF1AD	-	TRUE	AluSz6	SINE,Alu
chr19	7116159	G	T	0.00368	INSR	-	FALSE
chr1	24296874	G	A	0.00627		.	FALSE	AluSg	SINE,Alu
chr1	20826790	T	C	0.00208	MUL1	-	FALSE
chr9	131093963	A	G	0.00299	COQ4	+	TRUE	AluJo	SINE,Alu
chr1	144868170	C	T	0.00415	NBPF20,PDE4DIP	+,-	FALSE
chr6	74134804	T	C	0.00386		.	FALSE	AluSz	SINE,Alu
chr1	8877520	A	T	0.00308	RERE	-	FALSE
chr1	36067886	T	C	1.98907E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr17	73819348	T	C	0.00213	UNK	+	FALSE
chr2	102484489	A	C	0.00281	MAP4K4	+	FALSE
chr5	70952934	C	T	0.00315	MCCC2	+	FALSE	MIR	SINE,Alu
chr3	10302056	A	G	0.00018	TATDN2	+	FALSE
chr11	75526481	C	A	0.00995	UVRAG	+	FALSE
chr2	132481529	C	T	0.00028	C2orf27A	+	FALSE
chr1	15909850	C	G	0.00660	AGMAT	-	FALSE
chr1	32096265	A	G	0.00208	PEF1	-	FALSE
chr1	168218735	A	G	0.00924		.	FALSE	AluSz	SINE,Alu
chr1	99164434	G	A	0.00309	SNX7	+	FALSE
chr19	1981317	T	A	0.00539	CSNK1G2	+	FALSE
chr2	203741032	T	C	0.00282		.	FALSE	AluJr	SINE,Alu
chr1	94353045	G	T	0.00351	GCLM	-	FALSE	AluSg	SINE,Alu
chr4	38945834	T	C	0.00287	FAM114A1	+	FALSE	AluSc	SINE,Alu
chr4	88293887	G	A	0.00548	HSD17B11	-	FALSE
chr3	184766301	T	C	0.00025	VPS8	+	FALSE
chr12	27848051	C	A	0.00245	PPFIBP1	+	FALSE
chrX	71492446	A	T	0.00281		.	FALSE
chr10	51374391	C	G	0.00028	TIMM23B	+	FALSE
chr1	38463218	G	A	1.86271E-07	FHL3	-	FALSE
chr3	113604709	T	C	0.00012	GRAMD1C	+	FALSE
chr4	101947014	G	C	0.00140	PPP3CA	-	FALSE
chr1	1647814	T	C	8.49337E-05	CDK11B,CDK11A	-	FALSE
chr3	149237753	G	A	2.17555E-05	WWTR1	-	FALSE	AluSq2	SINE,Alu
chr3	33430398	T	A	0.00025	UBP1	-	FALSE
chr5	156904831	T	C	0.00351	ADAM19	-	TRUE	MER92B	SINE,Alu
chr11	126147713	C	G	0.00384	FOXRED1	+	FALSE
chr15	41591417	A	G	2.88542E-07	OIP5-AS1	+	TRUE	AluSx	SINE,Alu
chr3	45960556	C	T	0.00500	FYCO1	-	FALSE
chr1	19585771	A	G	0.00029	MRTO4	+	FALSE	AluSc8	SINE,Alu
chr12	51325349	C	G	0.00225	METTL7A	+	FALSE	AluSq2	SINE,Alu
chr1	59246520	A	C	7.56706E-05	JUN	-	FALSE
chr6	134492485	C	T	0.00245	SGK1	-	FALSE
chr1	53366673	A	G	0.00243	ECHDC2	-	FALSE	AluJb	SINE,Alu
chr1	116237496	T	A	0.00934	VANGL1	+	FALSE
chr3	105294534	A	G	1.10929E-06	ALCAM	+	FALSE
chr1	1152310	C	T	0.00862	SDF4	-	FALSE
chr2	3609064	G	A	0.00212	RNASEH1-AS1	+	FALSE	MER33	SINE,Alu
chr1	9324670	A	G	0.00734	H6PD	+	FALSE
chr2	201842323	T	C	0.00254	FAM126B	-	TRUE	AluJb	SINE,Alu
chr5	125961810	A	G	3.92353E-06	PHAX	+	TRUE	FLAM_C	SINE,Alu
chr1	145281633	C	A	0.00510	NBPF20,NOTCH2NL	+	FALSE
chrX	123046695	A	G	0.00054	XIAP	+	TRUE	AluSz	SINE,Alu
chr2	128601426	T	C	0.00034		.	FALSE	AluJr	SINE,Alu
chr19	9672979	T	C	0.00028		.	FALSE	AluSx3	SINE,Alu
chr3	44790879	T	C	0.00453	KIAA1143	-	TRUE	AluY	SINE,Alu
chr4	2940147	T	C	0.00061	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr4	2951804	A	G	7.08227E-08	NOP14-AS1,NOP14	+,-	FALSE
chr2	96915238	T	C	0.00510		.	FALSE	AluJr	SINE,Alu
chr1	94995225	G	A	0.00344	F3	-	FALSE
chr1	28661633	A	G	0.00053	MED18	+	TRUE	AluSg	SINE,Alu

RBP	NAA15
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR355OQC
Platform	HiSeq
Pubmed ID	32252787

NAA15 - Target Gene Network