RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	19542456	T	C	0.00193	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	22418284	G	T	0.00024	CDC42	+	FALSE	(T)n	SINE,Alu
chr4	165998078	T	C	0.00567	TMEM192	-	TRUE	AluSx	SINE,Alu
chr4	25279508	G	A	3.42130E-11	PI4K2B	+	FALSE
chr19	49468569	G	T	0.00266	FTL	+	FALSE
chr7	4809089	A	G	0.00552	FOXK1	+	TRUE	AluSx1	SINE,Alu
chr1	145513090	A	G	0.00017	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	47767914	G	A	0.00061	STIL	-	FALSE
chr1	1650797	A	G	3.70820E-05	CDK11B,CDK11A	-	FALSE
chr12	98943103	A	G	3.95351E-06	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	38423182	G	C	0.00664	SF3A3	-	FALSE	AluJo	SINE,Alu
chr1	54691922	T	A	0.00067	SSBP3	-	FALSE
chr1	206635244	T	A	0.00195	SRGAP2	+	FALSE
chr12	125511942	A	G	0.00596	THRIL	-	FALSE	AluSx1	SINE,Alu
chr21	40567665	G	A	0.00786	BRWD1	-	FALSE
chr1	45975286	A	G	0.00200	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	1650801	T	C	0.00827	CDK11B,CDK11A	-	FALSE
chr1	117531621	A	G	0.00577	PTGFRN	+	FALSE
chr1	16890421	G	A	0.00024	NBPF1	-	FALSE
chr1	19578192	G	A	0.00246	MRTO4	+	FALSE
chr1	25688276	A	G	0.00015	TMEM50A	+	FALSE
chr2	128601583	T	C	0.00550		.	FALSE	AluJr	SINE,Alu
chr1	43167907	T	C	0.00072	YBX1	+	FALSE
chr1	19934793	G	A	0.00376	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr15	41590999	A	G	0.00049	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr2	208620143	A	G	0.00605	CCNYL1	+	TRUE	EutTc1-N1	SINE,Alu
chr1	89237556	C	T	0.00840	PKN2	+	FALSE
chr1	10042955	A	G	0.00430	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr19	50412217	C	G	0.00017	IL4I1,NUP62	-	FALSE	(GGT)n	SINE,Alu
chr1	16932428	C	G	0.00620	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr19	19792288	A	G	0.00379	ZNF101	+	TRUE	AluJb	SINE,Alu
chr1	19543973	T	C	0.00236	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	45975345	A	G	0.00129	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr2	187544230	T	A	0.00930	ITGAV	+	FALSE
chr1	148343689	A	G	0.00517	NBPF8,NBPF14,NBPF9	-	FALSE
chr1	115275398	T	G	0.00474	CSDE1	-	FALSE
chr4	39550085	T	C	3.55103E-05	UGDH-AS1,SMIM14	+,-	FALSE	FLAM_C	SINE,Alu
chr1	100489835	A	G	0.00230	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr16	75479470	T	C	3.73920E-07	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr3	37031951	G	A	0.00914	EPM2AIP1	-	FALSE	(A)n	SINE,Alu
chr2	234386134	A	G	0.00196	USP40	-	FALSE
chr1	19543457	T	C	0.00101	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	19586501	A	G	5.42567E-10	MRTO4	+	TRUE	AluSz	SINE,Alu
chr15	41593268	A	G	0.00084		.	FALSE	AluSz6	SINE,Alu
chr7	22765456	G	T	5.19964E-05	LOC541472	-	FALSE
chr1	177976440	C	T	0.00148	LOC730102	-	FALSE
chr2	61277463	A	G	0.00826	PEX13	+	TRUE	AluSx	SINE,Alu
chr3	156258389	T	C	0.00179	SSR3	-	TRUE	AluYk3	SINE,Alu
chr4	39289308	G	C	0.00509	RFC1	-	FALSE
chr2	152132130	A	G	0.00071	NMI	-	FALSE
chr1	145283980	C	T	0.00113	NBPF20,NOTCH2NL	+	FALSE
chr3	129152089	G	A	0.00154	MBD4	-	FALSE
chr4	2940364	T	C	0.00329	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr2	37331525	T	C	0.00020		.	FALSE	AluJb	SINE,Alu
chr5	81571876	A	T	0.00092	RPS23	-	FALSE
chr4	183721749	G	A	0.00324	TENM3	+	FALSE
chr1	36789546	A	G	0.00562	EVA1B	-	FALSE	MIRb	SINE,Alu
chr1	172411496	A	G	0.00361	C1orf105,PIGC	+,-	FALSE
chr1	109180686	C	T	1.31584E-05	FAM102B	+	FALSE
chr2	203744240	T	C	0.00595		.	FALSE	AluSx	SINE,Alu
chr5	204215	A	G	0.00872		.	FALSE	MER68	SINE,Alu
chr5	176883676	A	T	0.00456	DBN1	-	FALSE	(A)n	SINE,Alu
chr1	149818472	T	C	0.00131		.	FALSE	MLT1D	SINE,Alu
chr1	38326704	T	C	0.00328	INPP5B	-	TRUE	AluJr	SINE,Alu
chr12	44181367	G	A	0.00608	IRAK4	+	FALSE	MLT1E1A	SINE,Alu
chr7	44841236	G	A	0.00819	PPIA	+	FALSE
chr1	10520669	T	C	0.00963	DFFA	-	FALSE	AluSc8	SINE,Alu
chr1	9162224	T	C	0.00523		.	FALSE	AluSx	SINE,Alu
chr1	193054154	G	A	0.00757	TROVE2	+	FALSE
chr1	28826085	A	G	0.00212	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	145442111	C	A	0.00090	NBPF20,NBPF10,TXNIP	+	FALSE
chr1	109465167	T	A	0.00233	GPSM2	+	FALSE
chr1	3546132	G	A	0.00113	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr1	53291408	A	G	0.00021	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	19934758	C	G	1.75422E-05	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr1	17287301	A	G	0.00104	CROCC	+	FALSE
chr1	28826150	A	G	0.00152	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	179829425	T	C	1.55944E-05	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr3	10356760	G	A	0.00951	SEC13	-	FALSE	MIRb	SINE,Alu
chr1	144614842	C	G	0.00015	NBPF20	+	FALSE
chr1	1647814	T	C	7.10450E-06	CDK11B,CDK11A	-	FALSE
chr3	141164940	C	A	0.00194	ZBTB38	+	FALSE
chr3	27763674	T	G	0.00617	EOMES	-	FALSE
chr2	17897488	T	C	0.00430	SMC6	-	FALSE
chr2	37331855	C	T	0.00965		.	FALSE	L1MC4	SINE,Alu
chr10	28971536	A	T	0.00815	BAMBI	+	FALSE
chr1	32373854	A	T	0.00096	PTP4A2	-	FALSE
chr10	75008846	T	C	0.00135	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr3	86991598	G	T	0.00179	VGLL3	-	FALSE
chr1	1597403	C	T	0.00912	CDK11B,SLC35E2B	-	FALSE
chr6	143832707	G	A	0.00418	FUCA2	-	FALSE	(GCA)n	SINE,Alu
chr3	160213318	T	G	0.00215	KPNA4	-	FALSE
chr4	22404391	G	A	0.00338	ADGRA3	-	FALSE
chr1	155032752	A	G	0.00347	LOC100505666,ADAM15	+,-	FALSE
chr1	165877671	T	C	0.00376	UCK2	+	FALSE	(T)n	SINE,Alu
chr12	56215102	T	A	0.00405	DNAJC14	-	FALSE
chr7	158590740	A	T	0.00211	ESYT2	-	FALSE
chr3	42592902	T	C	5.80731E-05	SEC22C	-	FALSE	AluJr	SINE,Alu
chr1	179832838	A	G	0.00018	TOR1AIP2	-	FALSE	MLT1L	SINE,Alu
chr4	88061645	T	A	0.00049	AFF1	+	FALSE	(TATAT)n	SINE,Alu
chr1	180082702	G	C	0.00019	CEP350	+	FALSE
chr6	150046603	T	C	0.00763	NUP43	-	TRUE	AluSq2	SINE,Alu
chr1	168218543	A	G	0.00547		.	FALSE	AluSz	SINE,Alu
chr4	2940371	T	C	0.00905	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	10044366	A	G	0.00958	NMNAT1	+	TRUE	AluSx1	SINE,Alu
chr1	36534736	A	G	0.00016		.	FALSE	AluJo	SINE,Alu
chr1	45975673	A	G	0.00242	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr7	99649179	A	G	0.00360	ZSCAN21	+	TRUE	AluY	SINE,Alu
chr1	27108245	T	C	0.00265	ARID1A	+	FALSE
chr15	44055281	T	C	0.00580	PDIA3	+	FALSE
chr2	113334414	A	G	0.00281	POLR1B	+	TRUE	AluSz	SINE,Alu
chr2	73460299	G	C	0.00180	PRADC1	-	FALSE	(CGGCGC)n	SINE,Alu
chr1	87328433	T	C	3.09926E-06	SEP15	-	FALSE
chr16	3207363	C	T	0.00104		.	FALSE
chr1	1447756	G	C	0.00354	ATAD3A	+	FALSE
chr1	3545198	T	C	0.00013	TPRG1L	+	FALSE
chr1	93301947	C	T	0.00039	FAM69A,RPL5	+,-	FALSE
chr1	53289547	A	G	0.00505	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr17	61502459	T	A	0.00161	TANC2	+	FALSE
chr1	16945570	A	G	0.00251	CROCCP2	-	FALSE
chr7	29962666	T	A	0.00077	SCRN1	-	FALSE
chr1	20976032	T	C	9.95086E-05	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr6	47592330	T	A	0.00830	CD2AP	+	FALSE
chr1	32669918	G	A	0.00344	CCDC28B	+	FALSE
chr2	183642878	G	A	0.00373	DNAJC10	+	FALSE
chr1	31532312	C	T	0.00215	PUM1	-	FALSE
chr1	160990876	C	A	1.09997E-06	F11R	-	FALSE
chr1	93828011	G	T	0.00464	DR1	+	FALSE
chr6	42855200	A	G	2.13337E-05	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr7	138764145	T	C	0.00399	ZC3HAV1	-	FALSE
chr3	10192694	A	G	0.00277	VHL	+	TRUE	AluSx1	SINE,Alu
chr12	98942820	A	G	0.00568	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	39470978	T	A	0.00378	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr17	49041692	T	C	2.35976E-05	SPAG9	-	TRUE	AluSx	SINE,Alu
chr1	16889624	T	C	0.00614	NBPF1	-	TRUE
chr5	134086670	C	A	0.00585	CAMLG	+	FALSE
chrX	77083007	T	C	0.00371	MAGT1	-	TRUE	AluSg	SINE,Alu
chr1	6279957	A	G	0.00814	RNF207	+	TRUE	AluSp	SINE,Alu
chr3	99516962	C	A	2.05391E-14	MIR548G	-	FALSE
chr1	207247475	C	A	0.00680	PFKFB2	+	FALSE	MER5B	SINE,Alu
chr1	212114662	A	G	0.00858	INTS7	-	FALSE
chr1	6583538	T	C	0.00455	NOL9	-	TRUE	AluSq	SINE,Alu
chr4	66439443	T	C	0.00593	EPHA5	-	FALSE
chr1	10520505	T	C	0.00011		.	FALSE	AluSx1	SINE,Alu
chr5	145493224	A	T	0.00251	LARS	-	FALSE
chr1	33150643	G	A	0.00606	SYNC,RBBP4	+,-	FALSE	AluJo	SINE,Alu
chr5	150578574	A	G	0.00447	CCDC69	-	FALSE
chr3	101405564	G	A	0.00354		.	FALSE
chr1	28564195	T	C	0.00113	ATPIF1	+	FALSE
chr5	68850922	G	C	0.00323	OCLN	+	FALSE	AluSx4	SINE,Alu
chr8	25272364	C	G	0.00693	DOCK5	+	FALSE
chr1	145688973	A	G	8.24717E-05	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	28826114	A	G	0.00264	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	9162932	A	T	0.00635		.	FALSE
chr1	154554950	G	T	0.00599	ADAR	-	FALSE
chr1	100489996	A	G	0.00069	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr19	3467756	C	T	0.00485	NFIC	+	FALSE	(TA)n	SINE,Alu
chr15	42861705	A	G	0.00518	HAUS2	+	TRUE	AluJb	SINE,Alu
chr3	40577755	A	G	0.00044	ZNF621	+	TRUE	AluSz	SINE,Alu
chr7	91742141	T	A	0.00620	CYP51A1	-	FALSE	AluSx3	SINE,Alu
chr9	132266648	A	G	0.00230	LINC00963	+	TRUE	AluSx	SINE,Alu
chr1	55619569	C	T	0.00477	USP24	-	FALSE
chr1	40219065	C	T	0.00232	PPIE	+	FALSE
chrM	8859	G	A	0.00929		.	FALSE
chr3	107526182	T	C	7.17610E-07	BBX	+	FALSE
chr1	35816903	C	T	0.00174	ZMYM4	+	FALSE
chr1	1246979	G	T	0.00168	PUSL1,CPSF3L	+,-	FALSE
chr1	10517276	T	C	0.00039		.	FALSE	AluJr	SINE,Alu
chr19	11256702	T	C	6.98885E-06	SPC24	-	TRUE	AluJr4	SINE,Alu
chr12	69159400	G	A	0.00173	SLC35E3	+	FALSE	(AT)n	SINE,Alu
chr3	124488267	G	A	3.46260E-06	ITGB5	-	FALSE
chr7	102004748	T	C	0.00050	LOC100289561,LOC100630923	+	FALSE
chr2	20818330	T	C	0.00228	HS1BP3	-	TRUE
chr19	39433139	T	G	0.00235	FBXO17	-	FALSE	AluJb	SINE,Alu
chr5	134061334	A	G	0.00721	SEC24A	+	FALSE
chr9	34088029	C	T	0.00501	DCAF12	-	FALSE
chr2	37328012	T	C	6.47624E-05		.	FALSE
chr2	114220055	T	C	9.23000E-05	CBWD2	+	FALSE
chr1	26755536	A	G	0.00515	LIN28A	+	TRUE	AluSc	SINE,Alu
chr1	6695423	T	G	9.25675E-05	THAP3,DNAJC11	+,-	FALSE
chr1	19653870	T	C	0.00477	PQLC2	+	FALSE
chr17	40723650	A	T	0.00250	MLX	+	FALSE
chr4	83406548	A	T	0.00020	TMEM150C	-	FALSE
chr22	39069181	T	C	0.00346	CBY1	+	FALSE
chr1	142688511	T	C	0.00089		.	FALSE
chr1	6314743	C	T	0.00615	GPR153	-	FALSE
chr19	18475303	A	G	0.00757	PGPEP1	+	TRUE	AluSx1	SINE,Alu
chr1	93828523	T	A	0.00155		.	FALSE
chr2	102508658	T	A	0.00275	MAP4K4	+	FALSE
chr2	47085954	C	T	0.00805	LINC01119	+	FALSE
chr19	53914448	A	G	0.00583	ZNF765	+	TRUE	AluSx	SINE,Alu
chr5	162902516	T	C	0.00226	HMMR	+	FALSE
chr12	54634283	T	C	0.00047	CBX5	-	TRUE	AluJr	SINE,Alu
chr1	145512014	A	G	0.00370	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	19199221	C	T	0.00676	ALDH4A1	-	FALSE
chr14	50792961	G	A	0.00547		.	FALSE	AluSx	SINE,Alu
chr19	9673275	T	C	0.00081		.	FALSE	Tigger1	SINE,Alu
chr1	114940216	T	G	0.00148	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	10520072	T	C	0.00115		.	FALSE	AluSx	SINE,Alu
chr1	26604691	G	C	0.00043	CEP85	+	FALSE
chr1	19810692	A	C	0.00069	CAPZB	-	FALSE
chr1	16893841	C	T	0.00272	NBPF1	-	FALSE
chr11	68523082	T	C	0.00019	CPT1A	-	TRUE	AluY	SINE,Alu
chr4	1305799	C	T	0.00271	MAEA	+	FALSE
chr1	87811103	T	G	0.00028	LMO4	+	FALSE
chr1	47142539	T	A	0.00066	EFCAB14-AS1,EFCAB14	+,-	FALSE
chr1	27202844	T	C	0.00076		.	FALSE	AluSq2	SINE,Alu
chr5	140798639	G	C	3.89156E-05	PCDHGA1,PCDHGA2,PCDHGA3,PCDHGB1,PCDHGA4,PCDHGB2,PCDHGA5,PCDHGB3,PCDHGA6,PCDHGA7,PCDHGB4,PCDHGA8,PCDHGB5,PCDHGA9,PCDHGB6,PCDHGA10,PCDHGB7	+	FALSE
chr3	181430141	G	C	0.00086	SOX2-OT,SOX2	+	FALSE

RBP	EWSR1
Knock-Method	shRNA
RBP Family	zf-RanBP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR831YGP
Platform	HiSeq
Pubmed ID	32252787

EWSR1 - Target Gene Network