Dataset Overview
RBP
CNOT7
Knock-Method
shRNA
RBP Family
CAF1
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR274KWA
Platform
HiSeq
Pubmed ID
32252787
CNOT7 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of CNOT7
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
15.89
5.32
-1.63590
1.68042E-16
1.38740E-15
A1CF
30.66
18.7
-1.31066
6.99953E-36
1.66332E-34
A4GALT
0.85
0.47
-0.85566
0.03292
0.05125
AAAS
25.65
24.87
-0.37090
0.00048
0.00103
AACS
15.28
13.53
-0.40693
0.00012
0.00029
AACSP1
0.05
2.63
5.43949
2.54377E-40
7.51414E-39
AAED1
6.5
4.97
-0.60171
1.77714E-05
4.80305E-05
AAGAB
8.9
18.37
0.75019
3.04568E-09
1.30877E-08
AAK1
2.42
3.03
0.47390
0.00259
0.00494
AARS
64.38
98.69
0.40966
0.01219
0.02060
Showing 1 to 10 of 9,299 entries
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Function Analysis of Target Genes of CNOT7
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC2
101581647_101581686_101578845_101579026_101590063_101590190
0.00435
0.02
DataSet_01_422
View details
AC138969.4
16429717_16429994_16427593_16427741_16434162_16434358
0.00705
-0.088
DataSet_01_422
View details
ACADM
76194085_76194173_76190451_76190502_76198328_76198426
0.00780
0.046
DataSet_01_422
View details
ACADM
76194073_76194173_76190464_76190502_76198328_76198426
0.00664
0.081
DataSet_01_422
View details
ADD1
2911065_2911158_2910241_2910331_2916610_2916767
0.00115
0.05
DataSet_01_422
View details
ADD3
111892062_111892257_111890120_111890244_111893083_111893106
0.00001
0.446
DataSet_01_422
View details
AFMID
76200736_76200822_76198783_76198832_76200908_76200981
0.00582
-0.169
DataSet_01_422
View details
AFP
74310709_74310839_74309063_74309161_74315051_74315184
0.00000
0.013
DataSet_01_422
View details
AFP
74313178_74313393_74309063_74309161_74315051_74315184
0.00026
0.01
DataSet_01_422
View details
AFP
74320952_74321007_74319481_74319614_74321347_74321891
0.00168
0.006
DataSet_01_422
View details
Showing 1 to 10 of 270 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9264754_9264807_9264904_9265132_9262909_9262930
0.00000
-0.265
DataSet_01_422
View details
A2M
9262462_9262631_9262909_9262930_9261935_9262001
0.00002
0.093
DataSet_01_422
View details
ACAD10
112148076_112148241_112150301_112150461_112147329_112147488
0.00640
-0.101
DataSet_01_422
View details
ACADVL
7126451_7126556_7126962_7127049_7126078_7126184
0.00033
-0.056
DataSet_01_422
View details
ADAM9
38940486_38940592_38948777_38948865_38940159_38940240
0.00000
0.213
DataSet_01_422
View details
AFMID
76187050_76187141_76198579_76198684_76183397_76183514
0.00040
-0.075
DataSet_01_422
View details
AFP
74306475_74306530_74309067_74309161_74303842_74304023
0.00367
-0.154
DataSet_01_422
View details
AHSG
186336285_186336426_186337645_186337729_186334975_186335139
0.00000
-0.011
DataSet_01_422
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AHSG
186336300_186336426_186337645_186337729_186334975_186335139
0.00000
-0.009
DataSet_01_422
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AHSG
186336079_186336280_186336285_186336426_186334975_186335139
0.00001
-0.013
DataSet_01_422
View details
Showing 1 to 10 of 128 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACP1
272036_272116_272036_272065_272191_273155
0.00000
-0.675
DataSet_01_422
View details
AHSG
186336285_186336426_186336285_186336364_186337663_186337729
0.00495
0.03
DataSet_01_422
View details
ALCAM
105268970_105269201_105268970_105269103_105270987_105271026
0.00001
0.134
DataSet_01_422
View details
ATP5G1
46970178_46970272_46970178_46970202_46970770_46970818
0.00725
0.079
DataSet_01_422
View details
ATXN2
111923068_111923135_111923074_111923135_111908361_111908546
0.00560
0.184
DataSet_01_422
View details
BCL2L2-PABPN1
23793346_23793537_23793346_23793498_23794455_23794538
0.00684
0.086
DataSet_01_422
View details
CFB
31915732_31915971_31915732_31915858_31916150_31916289
0.00166
0.037
DataSet_01_422
View details
CHPT1
102120071_102120295_102120071_102120182_102122678_102122829
0.00000
-0.131
DataSet_01_422
View details
CHPT1
102120071_102120275_102120071_102120182_102122678_102122852
0.00008
-0.112
DataSet_01_422
View details
CIRBP
1271327_1271466_1271327_1271364_1271549_1271631
0.00168
0.034
DataSet_01_422
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Showing 1 to 10 of 44 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACTG1
79478928_79479168_79478928_79479141_79479257_79479386
0.00433
0.014
DataSet_01_422
View details
AP1G2
24030720_24030962_24030720_24030844_24031170_24031262
0.00807
-0.158
DataSet_01_422
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APOA2
161193056_161193247_161193056_161193215_161193384_161193418
0.00110
0.059
DataSet_01_422
View details
ATN1
7043002_7043191_7043018_7043191_7037475_7037547
0.00342
0.198
DataSet_01_422
View details
C20orf112
31052582_31052937_31052582_31052920_31062403_31062545
0.00095
0.103
DataSet_01_422
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CAMTA2
4885383_4885522_4885383_4885455_4886051_4886150
0.00685
-0.107
DataSet_01_422
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CARS
3062125_3062261_3062125_3062214_3063394_3063486
0.00429
-0.14
DataSet_01_422
View details
CIC
42798086_42798241_42798089_42798241_42797743_42797988
0.00397
0.258
DataSet_01_422
View details
DHRS2
24110874_24112428_24112360_24112428_24109002_24109104
0.00000
-0.054
DataSet_01_422
View details
DHX29
54589844_54589994_54589844_54589973_54591206_54591368
0.00719
0.227
DataSet_01_422
View details
Showing 1 to 10 of 35 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AP1G2
24032924_24033430_24032924_24033065_24033254_24033430
0.00105
-0.148
DataSet_01_422
View details
AQP3
33442849_33443456_33442849_33442968_33443176_33443456
0.00954
-0.792
DataSet_01_422
View details
ARL6IP4
123466503_123467085_123466503_123466621_123467015_123467085
0.00518
0.014
DataSet_01_422
View details
ATXN2L
28847253_28848558_28847253_28847806_28848048_28848558
0.00905
0.067
DataSet_01_422
View details
C17orf76-AS1
16342640_16343017_16342640_16342728_16342841_16343017
0.00002
0.091
DataSet_01_422
View details
CDK5RAP3
46052879_46053379_46052879_46053019_46053234_46053379
0.00899
0.095
DataSet_01_422
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CFB
31915721_31916289_31915721_31915858_31916150_31916289
0.00988
0.039
DataSet_01_422
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CLK4
178044344_178045779_178044344_178044435_178045556_178045779
0.00901
0.211
DataSet_01_422
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CSF3R
36931644_36932912_36931644_36932428_36932830_36932912
0.00846
-0.059
DataSet_01_422
View details
DHRS2
24109002_24112428_24109002_24109104_24112360_24112428
0.00038
-0.04
DataSet_01_422
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
167759281
T
C
0.00923
MPZL1
+
FALSE
chr1
52306075
T
C
0.00135
NRDC
-
FALSE
(TCA)n
SINE,Alu
chr1
1309464
C
T
3.88389E-12
AURKAIP1
-
FALSE
chr1
40214261
A
G
0.00879
PPIE
+
TRUE
AluSq2
SINE,Alu
chr1
11119935
G
T
2.46542E-05
SRM
-
FALSE
chr1
11181327
C
T
0.00573
MTOR
-
FALSE
chr1
24995941
A
G
0.00382
SRRM1
+
FALSE
chr1
33148623
A
G
0.00221
SYNC,RBBP4
+,-
FALSE
AluSc
SINE,Alu
chr1
224380757
A
G
0.00618
DEGS1
+
FALSE
AluSx
SINE,Alu
chr1
144815953
A
G
0.00348
NBPF20,NBPF9
+
FALSE
Showing 1 to 10 of 229 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression