RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	167759281	T	C	0.00923	MPZL1	+	FALSE
chr7	43679092	G	C	1.19724E-06	COA1	-	FALSE
chr4	66439707	T	C	0.00148	EPHA5	-	FALSE
chr1	52306075	T	C	0.00135	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr1	1309464	C	T	3.88389E-12	AURKAIP1	-	FALSE
chr1	40214261	A	G	0.00879	PPIE	+	TRUE	AluSq2	SINE,Alu
chr2	127826533	A	G	0.00942	BIN1	-	FALSE
chr1	11119935	G	T	2.46542E-05	SRM	-	FALSE
chr12	44182706	A	G	0.00788	IRAK4	+	FALSE	MSTB-int	SINE,Alu
chr3	156259331	T	C	0.00088	SSR3	-	TRUE	AluSq2	SINE,Alu
chr7	44917316	T	C	0.00564	PURB	-	FALSE	AluSz	SINE,Alu
chr6	26095468	A	G	0.00980	HFE	+	TRUE	AluY	SINE,Alu
chr11	76835290	C	T	0.00011	CAPN5	+	FALSE
chr1	11181327	C	T	0.00573	MTOR	-	FALSE
chr2	204162597	A	G	0.00296	CYP20A1	+	TRUE	AluSx	SINE,Alu
chr7	44842429	T	G	0.00384	PPIA	+	FALSE
chr5	79923430	T	C	0.00817	DHFR	-	TRUE	AluJr	SINE,Alu
chr1	24995941	A	G	0.00382	SRRM1	+	FALSE
chr1	33148623	A	G	0.00221	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	224380757	A	G	0.00618	DEGS1	+	FALSE	AluSx	SINE,Alu
chr3	179117128	T	C	0.00239	GNB4	-	TRUE	AluSz	SINE,Alu
chr7	64023371	T	C	0.00824	ZNF680	-	FALSE
chr1	144815953	A	G	0.00348	NBPF20,NBPF9	+	FALSE
chr2	61416411	T	G	0.00146	USP34	-	FALSE	AluSc8	SINE,Alu
chr1	326499	A	G	0.00583		.	FALSE
chr1	570178	G	A	0.00787		.	FALSE
chr4	13601337	G	A	7.28365E-09	BOD1L1	-	FALSE
chr1	104097685	C	T	0.00028	RNPC3,AMY2B	+	FALSE
chr7	2274221	T	C	0.00579	MRM2	-	TRUE	AluJr	SINE,Alu
chr3	15113842	T	C	0.00100	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	204521576	A	G	0.00021	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	36770600	G	T	0.00792	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	144932086	G	C	0.00997	NBPF20,PDE4DIP	+,-	FALSE
chr1	184661932	A	G	0.00063	EDEM3	-	FALSE
chr4	2940265	T	C	0.00413	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	22159774	G	A	0.00257	HSPG2	-	FALSE
chr2	37329214	T	C	0.00081		.	FALSE	AluJr4	SINE,Alu
chr10	49609751	A	G	0.00979	MAPK8	+	FALSE
chr1	77759578	A	G	4.05543E-05	AK5	+	FALSE
chr2	29023117	A	T	0.00805	PPP1CB	+	FALSE
chr16	75479470	T	C	3.73920E-07	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr9	136209402	A	G	0.00431	MED22	-	FALSE	(CAGGG)n	SINE,Alu
chr1	148753279	G	T	0.00358		.	FALSE
chr2	68402797	T	A	0.00656	PNO1	+	FALSE
chr1	179326882	A	G	0.00020	SOAT1	+	TRUE	AluJo	SINE,Alu
chr7	56131098	T	A	0.00950	CCT6A	+	FALSE	L1M5	SINE,Alu
chr3	156258273	T	C	0.00927	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	169824104	G	A	0.00744	SCYL3	-	FALSE
chr3	122283293	C	G	0.00071	DTX3L,PARP9	+,-	FALSE
chr1	11347142	C	G	0.00789	UBIAD1	+	FALSE
chr1	10520764	T	C	0.00501	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	86117122	T	C	0.00462	ZNHIT6	-	FALSE	AluSg	SINE,Alu
chr5	134236206	A	G	0.00065	TXNDC15	+	TRUE	AluSq	SINE,Alu
chr9	125609941	G	A	0.00043		.	FALSE
chr5	135513089	T	A	7.47633E-06	SMAD5	+	FALSE
chr21	37789499	A	G	0.00889		.	FALSE	AluJb	SINE,Alu
chr8	12283440	A	G	0.00041	FAM86B2	-	FALSE
chr1	10041422	A	G	0.00115	NMNAT1	+	TRUE	AluYj4	SINE,Alu
chr19	11256689	T	C	9.47404E-06	SPC24	-	TRUE	AluJr4	SINE,Alu
chr11	20101744	C	A	0.00540	NAV2	+	FALSE
chr1	144618144	A	G	0.00725	NBPF20,NBPF9	+	FALSE
chr4	1388115	C	G	0.00682	CRIPAK	+	FALSE	L1MB4	SINE,Alu
chr6	114182986	T	A	0.00316	MARCKS	+	FALSE
chr1	36770602	T	G	0.00441	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	24086786	A	C	0.00812	TCEB3	+	FALSE
chr5	151041883	G	A	0.00343	SPARC	-	FALSE
chr14	75202412	A	G	5.03546E-10	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	19545147	T	G	0.00510	LOC101927895,EMC1	+,-	FALSE
chr3	10192617	A	G	2.94246E-06	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	3395039	G	A	0.00027	ARHGEF16	+	FALSE
chr1	197070776	C	T	0.00698	ASPM	-	FALSE
chr1	224517842	C	T	0.00014	NVL	-	FALSE
chr19	53155567	T	C	0.00137	ZNF83	-	TRUE	AluSg	SINE,Alu
chr3	194124421	A	G	0.00024	ATP13A3	-	FALSE
chr2	11781593	G	T	0.00551	GREB1	+	FALSE
chr2	46612340	G	T	0.00094	EPAS1	+	FALSE
chr1	6281866	A	C	0.00102	ICMT	-	FALSE
chr2	63817855	C	G	0.00096	MDH1	+	FALSE
chr3	19992312	A	G	0.00798	RAB5A	+	FALSE
chr1	19953120	G	A	0.00024	MINOS1,MINOS1-NBL1	+	FALSE
chr20	36147563	T	C	0.00313	BLCAP	-	TRUE
chr1	230979247	G	A	0.00137	C1orf198	-	FALSE
chr4	17803616	T	C	0.00046	DCAF16	-	TRUE	AluY	SINE,Alu
chr2	227660628	T	G	0.00025	IRS1	-	FALSE
chr1	227211026	C	G	0.00373	CDC42BPA	-	FALSE
chr14	64152516	T	C	0.00011	SGPP1	-	FALSE	(TA)n	SINE,Alu
chr12	120898553	A	G	0.00233	GATC	+	TRUE	AluY	SINE,Alu
chr1	28826130	A	G	0.00207	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr17	5288083	T	A	0.00232	RABEP1	+	FALSE
chr2	64327544	G	T	0.00340	PELI1	-	FALSE
chr17	263417	C	T	0.00675	LOC105371430,C17orf97	+,-	FALSE
chr1	225974645	A	G	0.00984	SRP9	+	TRUE	AluJr	SINE,Alu
chr1	6659505	G	A	0.00405	KLHL21	-	FALSE
chr1	100489835	A	G	0.00043	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr2	176042865	G	T	0.00887	ATP5G3	-	FALSE
chr2	109401285	G	A	0.00087	RANBP2	+	FALSE
chr15	83659319	A	T	0.00130	FAM103A1,C15orf40	+,-	FALSE
chr5	150647744	A	G	0.00036	GM2A	+	TRUE	AluSc	SINE,Alu
chr1	193054576	T	C	0.00068	TROVE2	+	FALSE	(ATTTT)n	SINE,Alu
chr1	206669958	G	A	0.00347	IKBKE	+	FALSE
chr1	114940216	T	G	0.00148	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	36068231	T	C	0.00508	PSMB2	-	TRUE	AluSc	SINE,Alu
chr7	44841933	A	G	0.00192	PPIA	+	TRUE	AluSx	SINE,Alu
chr1	201846630	C	A	7.51318E-05	IPO9	+	FALSE	(CA)n	SINE,Alu
chr4	123816376	A	T	0.00445	FGF2,NUDT6	+,-	FALSE
chr4	128995640	G	A	0.00567	LARP1B	+	FALSE
chr1	23408939	T	A	1.04314E-06	KDM1A	+	FALSE
chr1	36770605	C	T	0.00041	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	3729587	A	G	0.00580	CEP104	-	FALSE	(AT)n	SINE,Alu
chr16	10623631	T	C	1.36144E-05	EMP2	-	TRUE	AluSp	SINE,Alu
chr3	176739580	T	C	4.09936E-06	TBL1XR1	-	FALSE
chr1	1549354	G	A	0.00132		.	FALSE	HAL1	SINE,Alu
chr5	140564263	C	T	0.00475	PCDHB16	+	FALSE
chr1	10517653	T	C	1.73226E-05		.	FALSE	AluSx1	SINE,Alu
chr1	78603279	A	G	0.00089	GIPC2	+	FALSE
chr1	118170485	T	C	0.00281	FAM46C	+	FALSE	(TG)n	SINE,Alu
chr1	118066459	A	G	0.00788	MAN1A2	+	FALSE
chr1	40539201	A	G	0.00028	PPT1	-	FALSE
chr1	150208462	A	C	9.89925E-05	ANP32E	-	FALSE
chr2	61764920	C	A	0.00662	XPO1	-	FALSE
chr10	60047608	A	G	0.00356	CISD1	+	FALSE	(A)n	SINE,Alu
chr11	82686151	T	C	0.00404	RAB30	-	FALSE
chr1	53289759	A	G	0.00329	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr2	37429737	A	G	3.16512E-05	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	9329105	T	A	0.00233	H6PD	+	FALSE
chr1	142688511	T	C	0.00089		.	FALSE
chr9	70483778	A	T	0.00026	CBWD5	-	FALSE
chr2	99772813	A	G	1.48642E-06	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr1	117530213	G	T	0.00256	PTGFRN	+	FALSE
chr17	65334846	T	C	0.00456	PSMD12	-	FALSE	AluSq	SINE,Alu
chr1	1595048	T	C	0.00399	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	44463185	T	G	0.00969	SLC6A9	-	FALSE
chr1	53289759	A	G	0.00383	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	26144435	C	G	0.00131	SEPN1	+	FALSE
chr1	205320469	G	A	0.00109	KLHDC8A	-	FALSE
chr3	183861750	A	C	1.09807E-05	EIF2B5	+	FALSE
chr1	31346203	A	C	0.00050	SDC3	-	FALSE
chr1	160966353	T	C	0.00011	F11R	-	TRUE	AluSg	SINE,Alu
chr1	6948076	C	T	0.00221	CAMTA1	+	FALSE	L2a	SINE,Alu
chr1	6160958	A	G	0.00967	KCNAB2	+	FALSE
chr3	172117458	A	C	0.00011	FNDC3B	+	FALSE
chr3	33185522	C	A	1.53330E-10	CRTAP	+	FALSE	L2a	SINE,Alu
chr1	95362514	G	T	7.06346E-05	CNN3	-	FALSE
chr3	196556843	G	A	4.00732E-06	PAK2	+	FALSE
chr2	204055454	T	C	0.00293	NBEAL1	+	FALSE
chr1	35648840	G	T	0.00543	SFPQ	-	FALSE	AluSx3	SINE,Alu
chr1	145688672	A	T	0.00770	NBPF20,NBPF10,RNF115	+	FALSE
chr1	16889624	T	C	0.00795	NBPF1	-	TRUE
chr1	32687472	G	A	0.00877	TMEM234,EIF3I	+,-	FALSE
chr2	86249930	T	C	0.00054	LOC90784	-	TRUE	AluJr	SINE,Alu
chr1	112003958	T	A	0.00557	ATP5F1	+	FALSE	Helitron2Na_Mam	SINE,Alu
chr15	44751338	G	A	0.00374	CTDSPL2	+	FALSE
chr1	45187511	T	C	7.71832E-06	C1orf228	+	FALSE	U5	SINE,Alu
chr1	6283348	T	C	0.00247	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	67874731	T	C	0.00565	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	38327700	T	C	0.00132	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr3	73116345	T	A	5.66390E-05	PPP4R2	+	FALSE
chr3	196556141	G	A	0.00534	PAK2	+	FALSE
chr1	203709034	A	G	0.00049	ATP2B4	+	FALSE
chr20	25428669	A	G	0.00023	GINS1	+	TRUE	AluJb	SINE,Alu
chr3	14526653	G	T	0.00936	SLC6A6	+	FALSE
chr1	6585331	T	C	0.00094	NOL9	-	TRUE	FAM	SINE,Alu
chr14	74526975	T	C	0.00024	BBOF1,ALDH6A1	+,-	FALSE	AluJo	SINE,Alu
chr14	69254646	T	C	0.00181	ZFP36L1	-	FALSE
chr2	178406765	T	A	0.00325	AGPS	+	FALSE
chr1	32706126	G	A	0.00932	MTMR9LP	-	FALSE
chr1	19542679	T	C	0.00738	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr1	54493443	C	A	0.00872	TMEM59	-	FALSE	AluSz6	SINE,Alu
chr1	85113229	A	G	0.00080	SSX2IP	-	FALSE
chr1	77759578	A	G	0.00031	AK5	+	FALSE
chr5	79923843	T	C	0.00229	DHFR	-	TRUE	AluSp	SINE,Alu
chr8	62626962	C	T	0.00823	ASPH	-	FALSE
chr1	77759578	A	G	0.00404	AK5	+	FALSE
chr1	150783968	T	A	0.00368	ARNT	-	FALSE
chr1	32372360	C	T	0.00697	PTP4A2	-	FALSE	(CA)n	SINE,Alu
chr1	10520130	T	C	0.00355		.	FALSE	AluSx	SINE,Alu
chr1	24999468	G	T	0.00075	SRRM1	+	FALSE	(T)n	SINE,Alu
chr1	116609833	G	A	0.00012	SLC22A15	+	FALSE
chr3	141667690	T	C	0.00018	TFDP2	-	TRUE	AluY	SINE,Alu
chr12	44181367	G	A	0.00608	IRAK4	+	FALSE	MLT1E1A	SINE,Alu
chr1	67895926	A	G	0.00705	SERBP1	-	FALSE
chr3	10193732	A	G	0.00472	VHL	+	TRUE	AluJr	SINE,Alu
chr3	10004768	G	A	3.85967E-05	EMC3	-	FALSE	Tigger14a	SINE,Alu
chr1	10520902	A	T	0.00032	DFFA	-	FALSE
chr1	160112392	G	A	0.00701	ATP1A2	+	FALSE	AluSx3	SINE,Alu
chr1	204526611	A	G	0.00402	MDM4	+	TRUE	AluSx	SINE,Alu
chr9	102744698	G	T	0.00301	ERP44	-	FALSE
chr1	204525744	A	G	0.00010	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	145369589	T	C	0.00128	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	115110683	A	C	0.00168	BCAS2	-	FALSE
chr4	52888499	G	A	0.00366	SGCB	-	FALSE
chr3	17201882	C	T	0.00259	TBC1D5	-	FALSE
chr15	91044385	G	T	0.00440	IQGAP1	+	FALSE
chr21	34731077	A	G	0.00926	IFNAR1	+	TRUE	AluJr	SINE,Alu
chr1	22854931	C	A	0.00238	ZBTB40	+	FALSE	A-rich	SINE,Alu
chr1	9331101	A	G	3.95613E-06	H6PD	+	FALSE	AluSx	SINE,Alu
chr3	179117270	T	C	0.00478	GNB4	-	TRUE	AluSz	SINE,Alu
chr1	108728562	A	T	0.00228	SLC25A24	-	FALSE
chr22	18571431	A	G	0.00158	PEX26	+	TRUE	AluSz	SINE,Alu
chr3	10192720	A	G	0.00110	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	26796922	G	C	0.00401	DHDDS	+	FALSE	FLAM_C	SINE,Alu
chr1	148556753	G	A	0.00272		.	FALSE
chr2	176792488	G	T	0.00195	LNPK	-	FALSE
chr1	90496713	A	G	0.00677	ZNF326	+	FALSE
chr1	6283306	T	C	0.00047	ICMT	-	TRUE	AluSx3	SINE,Alu
chr4	84525986	G	T	0.00081	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr1	9294903	C	G	0.00147	H6PD	+	FALSE
chr1	77556766	T	A	0.00576	PIGK	-	FALSE
chr11	68523055	T	C	0.00524	CPT1A	-	TRUE	AluY	SINE,Alu
chr1	39305002	A	T	0.00089	RRAGC	-	FALSE
chr2	208619742	A	G	1.70106E-07	CCNYL1	+	TRUE	AluJb	SINE,Alu
chr1	10519064	T	C	0.00515		.	FALSE	AluSx3	SINE,Alu
chr10	3208557	A	G	0.00128	PITRM1	-	FALSE
chr19	21474857	T	C	0.00131	ZNF708	-	TRUE	AluSc	SINE,Alu
chr2	28639641	C	G	0.00431		.	FALSE
chr17	42876398	T	C	0.00697	GJC1	-	FALSE	AluSz6	SINE,Alu
chr2	3592638	T	C	0.00164	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr8	26492397	C	T	0.00709	DPYSL2	+	FALSE
chr1	16893691	C	A	0.00764	NBPF1	-	FALSE
chr2	174090928	G	C	0.00852	ZAK,MLK7-AS1	+,-	FALSE
chr1	149913731	T	C	0.00198	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr5	75003678	T	C	0.00435	POC5	-	FALSE
chr2	17942775	T	A	0.00367	GEN1	+	FALSE
chr7	120740103	G	T	0.00601	CPED1	+	FALSE
chr19	42376692	A	G	0.00540		.	FALSE	AluSp	SINE,Alu
chr1	179042544	A	G	0.00722	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr2	46612340	G	T	3.13955E-05	EPAS1	+	FALSE
chr2	99813003	A	G	0.00046	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	1001422	G	T	0.00998		.	FALSE	LTR13A	SINE,Alu

RBP	CNOT7
Knock-Method	shRNA
RBP Family	CAF1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR274KWA
Platform	HiSeq
Pubmed ID	32252787

CNOT7 - Target Gene Network