RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	92941357	A	G	0.00296	GFI1	-	FALSE
chr1	179852074	T	C	0.00338	TOR1AIP1	+	FALSE
chr9	96438967	G	C	0.00648	PHF2	+	FALSE	(CTCCAC)n	SINE,Alu
chr7	44800040	C	A	0.00565	ZMIZ2	+	FALSE
chr1	46830257	C	T	0.00208	NSUN4	+	FALSE	AluSx1	SINE,Alu
chr1	16889864	C	A	0.00063	NBPF1	-	FALSE
chr13	46530764	T	G	0.00385		.	FALSE
chr1	206579798	T	C	0.00476	SRGAP2	+	FALSE
chr3	5258985	T	C	1.48069E-09	EDEM1	+	FALSE
chr7	6064010	C	A	0.00304	EIF2AK1	-	FALSE
chr1	182353198	A	T	0.00473	GLUL	-	FALSE
chr5	178293266	G	A	0.00924	ZNF354B	+	FALSE
chr16	28620957	T	C	0.00753	SULT1A1	-	TRUE	AluJr	SINE,Alu
chr1	145284138	G	A	0.00382	NBPF20,NOTCH2NL	+	FALSE	(TG)n	SINE,Alu
chr2	55516939	G	T	0.00628	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr14	67852067	A	G	2.77652E-05	EIF2S1	+	TRUE	AluJb	SINE,Alu
chr3	195393406	C	T	0.00690	SDHAP2	+	FALSE
chr1	16901668	T	C	0.00421	NBPF1	-	FALSE
chr1	10042988	A	G	0.00095	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr6	116256595	C	A	5.71236E-05		.	FALSE
chr5	81571878	A	T	8.61300E-05	RPS23	-	FALSE
chr1	145313405	C	T	0.00322	NBPF20,NBPF10	+	FALSE
chr1	10518037	T	C	0.00285		.	FALSE	AluJr	SINE,Alu
chr1	32479707	G	A	0.00000	KHDRBS1	+	FALSE
chr1	26755455	A	G	0.00342	LIN28A	+	TRUE	AluSc	SINE,Alu
chr1	144833382	C	T	0.00325	NBPF20	+	FALSE	L1MEc	SINE,Alu
chr17	80899281	G	A	0.00053	TBCD	+	FALSE
chr14	75203097	A	G	1.28940E-05	FCF1	+	TRUE	AluSx	SINE,Alu
chr1	85786957	T	G	0.00959	DDAH1	-	FALSE
chr1	36031860	G	T	0.00564	NCDN	+	FALSE
chr1	223178477	C	T	0.00519	DISP1	+	FALSE
chr2	191556849	A	T	0.00158	NAB1	+	FALSE
chr4	52888499	G	A	8.91315E-05	SGCB	-	FALSE
chr1	114226255	G	A	0.00381	MAGI3	+	FALSE
chr3	172350135	A	T	9.93187E-07	NCEH1	-	FALSE
chr1	10517659	T	C	0.00012		.	FALSE	AluSx1	SINE,Alu
chr1	10519946	T	C	0.00080		.	FALSE	AluJr	SINE,Alu
chr1	109747415	A	G	0.00549	KIAA1324	+	TRUE	AluJr4	SINE,Alu
chr8	146280802	C	T	1.51873E-05	C8orf33	+	FALSE	LTR13	SINE,Alu
chr8	9639522	A	G	0.00823	TNKS	+	TRUE	MER53	SINE,Alu
chr1	10519982	T	C	0.00417		.	FALSE	AluJr	SINE,Alu
chr4	17802890	T	C	0.00303	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	53288870	A	G	0.00501	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	28825418	A	G	0.00725	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr3	196659884	G	T	0.00217	SENP5	+	FALSE
chr6	160100931	T	C	0.00215	SOD2	-	TRUE	AluSz	SINE,Alu
chr1	16929327	C	T	0.00646	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chrX	152916229	G	A	0.00809	DUSP9	+	FALSE
chr20	25427856	A	G	0.00094	GINS1	+	FALSE	AluSz	SINE,Alu
chr1	201846627	A	T	0.00571	IPO9	+	FALSE	(CA)n	SINE,Alu
chr1	28661831	A	G	9.37902E-09	MED18	+	TRUE	AluSg	SINE,Alu
chr16	88789699	A	C	0.00936	PIEZO1	-	FALSE
chr2	170103351	G	T	0.00139	LRP2	-	FALSE
chr1	9161365	T	C	4.68504E-05		.	FALSE	AluSx	SINE,Alu
chr1	19586458	A	G	0.00029	MRTO4	+	TRUE	AluSz	SINE,Alu
chr6	150047376	T	C	0.00612	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	36068325	T	C	0.00638	PSMB2	-	TRUE	AluSc	SINE,Alu
chr17	42877584	T	C	0.00489	GJC1	-	TRUE	AluSg	SINE,Alu
chr1	19543459	T	C	0.00395	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr5	157184013	A	G	0.00631	LSM11	+	TRUE	AluY	SINE,Alu
chr1	179044242	A	G	0.00335	FAM20B	+	TRUE	AluSx	SINE,Alu
chrX	118920477	A	T	0.00529	RPL39	-	FALSE
chr2	3597974	T	C	1.93309E-05	RNASEH1	-	FALSE
chr1	179326588	A	G	0.00563	SOAT1	+	TRUE	AluSg	SINE,Alu
chr21	9908316	C	T	0.00719	TEKT4P2	-	FALSE
chr2	37328082	T	C	0.00243		.	FALSE
chr19	36260451	A	G	0.00854		.	FALSE	AluY	SINE,Alu
chr1	19934758	C	G	1.75422E-05	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr4	88814756	C	T	0.00145		.	FALSE
chr1	3729217	T	C	0.00030	CEP104	-	TRUE	AluSx3	SINE,Alu
chr3	47953733	C	A	0.00057	MAP4	-	FALSE
chr17	38438362	G	A	0.00016	WIPF2	+	FALSE	A-rich	SINE,Alu
chr2	201253956	A	G	0.00071	SPATS2L	+	FALSE
chr13	30084952	G	A	0.00045	SLC7A1	-	FALSE
chr1	23240263	G	A	5.22984E-05	EPHB2	+	FALSE
chr5	118811533	G	A	0.00781	HSD17B4	+	FALSE
chr1	6614230	G	A	0.00509	NOL9	-	FALSE
chr1	3546132	G	A	0.00113	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr1	26755229	A	G	0.00318	LIN28A	+	FALSE	AluSx1	SINE,Alu
chr1	52381350	T	G	4.39398E-08	RAB3B	-	FALSE
chr12	133298255	A	G	0.00016	PGAM5	+	TRUE	AluSp	SINE,Alu
chr2	128060859	T	A	0.00016	MAP3K2	-	FALSE
chr5	64097145	C	G	0.00361	CWC27	+	FALSE
chr4	66439707	T	C	0.00148	EPHA5	-	FALSE
chr1	53712727	C	T	0.00313	LRP8	-	FALSE
chr8	41401571	T	A	0.00240	LOC102723729,GINS4	+,-	FALSE
chr1	27205634	T	C	0.00025		.	FALSE	FLAM_A	SINE,Alu
chr2	128644574	A	G	0.00163		.	FALSE
chr4	177252327	A	G	2.51883E-09	SPCS3	+	TRUE
chrX	118672641	T	C	0.00027	CXorf56	-	TRUE	AluSx	SINE,Alu
chr1	10520532	T	C	0.00142		.	FALSE	AluSx1	SINE,Alu
chr1	20976163	C	T	0.00091	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	150594611	G	T	0.00329	ENSA	-	FALSE
chr2	11323106	G	T	0.00860	ROCK2	-	FALSE	(TA)n	SINE,Alu
chr19	58374130	C	T	0.00124	ZNF587	+	FALSE
chr10	60047608	A	G	0.00356	CISD1	+	FALSE	(A)n	SINE,Alu
chr2	233446265	T	C	0.00177	EIF4E2	+	FALSE
chr7	38764340	T	C	0.00630	VPS41	-	TRUE	AluSp	SINE,Alu
chr3	15113847	T	C	0.00026	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	115249239	G	A	1.76451E-06	NRAS	-	FALSE
chr6	47501448	T	C	0.00017	CD2AP	+	FALSE
chr1	87328400	C	T	0.00755	SEP15	-	FALSE
chr1	27992800	C	A	5.71645E-05	IFI6	-	FALSE	FAM	SINE,Alu
chr1	28835937	A	G	0.00061	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr3	194362721	G	A	5.25740E-07	LSG1	-	FALSE
chr1	36533368	A	G	0.00635		.	FALSE	AluSx	SINE,Alu
chr6	37138022	C	G	0.00953	PIM1	+	FALSE
chr1	156713558	G	A	8.10199E-06	HDGF	-	FALSE
chr1	120165038	A	G	0.00926	ZNF697	-	FALSE
chr5	149363214	A	G	0.00040	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr3	52800284	T	C	6.08396E-05	NEK4	-	FALSE
chr3	160213318	T	G	0.00215	KPNA4	-	FALSE
chr8	144332082	T	C	7.73207E-05	ZFP41	+	FALSE
chr1	19543353	T	C	0.00091	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	101623611	A	C	0.00826	RPL31	+	FALSE
chr1	149581866	C	G	0.00774	LINC00623,LINC00869,LOC103091866	+	FALSE	L2b	SINE,Alu
chr12	125511942	A	G	0.00596	THRIL	-	FALSE	AluSx1	SINE,Alu
chr1	144606838	A	G	0.00025	NBPF20	+	FALSE
chr17	49042388	T	C	2.65954E-10	SPAG9	-	TRUE	AluJb	SINE,Alu
chr1	148023637	C	T	0.00014	NBPF8	-	FALSE
chr1	78342729	A	G	0.00175	MIGA1	+	TRUE	FRAM	SINE,Alu
chr19	49468569	G	T	0.00266	FTL	+	FALSE
chrX	24095285	A	G	0.00135	EIF2S3	+	TRUE	AluSx	SINE,Alu
chr2	64119873	A	T	0.00492	VPS54	-	FALSE
chr15	33064791	G	A	0.00203	FMN1	-	FALSE
chr1	67874849	T	C	7.36358E-05	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	3745924	G	A	0.00612	CEP104	-	FALSE
chr7	138730361	T	C	0.00316	ZC3HAV1	-	FALSE	L2-1_AMi	SINE,Alu
chr2	188330198	C	A	0.00091	TFPI	-	FALSE	AluJb	SINE,Alu
chr3	14986111	T	C	0.00000	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	160967848	T	C	0.00200	F11R	-	TRUE	AluSp	SINE,Alu
chr5	150647744	A	G	0.00036	GM2A	+	TRUE	AluSc	SINE,Alu
chr2	128620436	C	T	0.00342	AMMECR1L	-	FALSE
chr2	37331753	T	C	0.00026		.	FALSE	AluJb	SINE,Alu
chr1	12073252	A	G	0.00990	MFN2	+	FALSE
chr1	26449340	G	A	0.00711	PDIK1L	+	FALSE
chr3	14986098	T	C	0.00000	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr5	70503941	C	A	0.00130		.	FALSE
chr1	33149496	A	G	0.00469	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	19954014	G	T	0.00055	MINOS1,MINOS1-NBL1	+	FALSE	L2c	SINE,Alu
chr1	52306079	T	A	0.00708	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr3	196670095	C	A	1.97381E-07	NCBP2-AS2	+	FALSE
chr1	52375677	T	C	0.00542	RAB3B	-	FALSE	MIRb	SINE,Alu
chr2	219460472	T	C	0.00187	CNOT9	+	FALSE
chr1	36067925	T	C	2.33961E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	6583066	T	C	0.00173	NOL9	-	TRUE	AluSx4	SINE,Alu
chr1	38326774	T	C	0.00664	INPP5B	-	TRUE	AluJr	SINE,Alu
chr1	110596904	A	G	0.00364	STRIP1	+	FALSE
chr15	63988357	C	G	0.00539	HERC1	-	FALSE
chr1	145290818	C	G	0.00931	NBPF20	+	FALSE
chr1	53291434	A	G	0.00124	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	36322433	G	A	0.00663	AGO4	+	FALSE
chr10	63852210	C	T	0.00324	ARID5B	+	FALSE
chr1	149913513	T	C	0.00495	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr4	169910101	C	T	0.00026	CBR4	-	FALSE
chr1	145512073	A	G	0.00066	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr2	206983075	T	C	0.00083		.	FALSE	AluJb	SINE,Alu
chr1	28826150	A	G	0.00048	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	113243096	G	T	0.00114	MOV10	+	FALSE
chr1	33149373	A	G	0.00239	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	6282400	T	C	0.00321	ICMT	-	TRUE	AluSz	SINE,Alu
chr20	4680094	C	T	0.00438	PRNP	+	FALSE
chr1	148556743	G	A	0.00402		.	FALSE
chr1	25894472	C	G	0.00063	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	138156	G	T	0.00177	LOC729737	-	FALSE
chr2	202031806	A	T	0.00543	CFLAR	+	FALSE
chr1	204525713	A	G	0.00501	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	115299504	G	T	0.00067	CSDE1	-	FALSE
chr1	205739266	C	T	0.00069	RAB29	-	FALSE
chr4	57326291	A	G	0.00424	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	19542310	T	C	0.00873	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	19545144	G	T	0.00071	LOC101927895,EMC1	+,-	FALSE
chr5	170832637	C	T	0.00071	NPM1	+	FALSE
chr3	33185036	G	A	0.00573	CRTAP	+	FALSE	L2a	SINE,Alu
chr1	55062960	G	A	0.00542	ACOT11	+	FALSE
chr1	1152601	A	G	0.00075	SDF4	-	FALSE
chr14	53242639	T	C	1.43651E-05	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr3	183900836	G	A	0.00658	AP2M1	+	FALSE
chr3	107765249	T	C	0.00156	CD47	-	FALSE
chr2	61277384	A	G	0.00339	PEX13	+	TRUE	AluSx	SINE,Alu
chr1	144931392	G	A	0.00172	NBPF20,PDE4DIP	+,-	FALSE
chr1	70718271	G	A	0.00273		.	FALSE
chr19	39433139	T	G	0.00235	FBXO17	-	FALSE	AluJb	SINE,Alu
chr19	42376710	A	G	1.82395E-05		.	FALSE	AluSp	SINE,Alu
chr1	27182750	G	C	0.00141		.	FALSE
chr2	242512159	A	G	0.00243	BOK	+	FALSE
chr1	17313654	C	T	0.00714	ATP13A2	-	FALSE
chr2	217366195	C	A	0.00929		.	FALSE
chr1	26144435	C	G	0.00131	SEPN1	+	FALSE
chr1	46521559	A	T	0.00177	PIK3R3	-	FALSE
chr3	41281407	G	T	0.00011	CTNNB1	+	FALSE
chr1	11119950	G	A	4.66412E-05	SRM	-	FALSE
chr7	29960812	T	A	1.34773E-06	SCRN1	-	FALSE
chr1	16909161	T	C	0.00718	NBPF1	-	FALSE
chr12	98942808	A	G	0.00019	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	67874689	T	C	0.00053	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr2	100019496	A	G	0.00789	REV1	-	FALSE
chr1	53289759	A	G	0.00329	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	33149443	A	G	0.00327	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr5	149829072	G	T	0.00816	RPS14	-	FALSE
chr1	144614842	C	G	0.00015	NBPF20	+	FALSE
chr1	19499560	T	C	0.00226	UBR4	-	FALSE
chr15	40955103	A	G	0.00372		.	FALSE	AluJb	SINE,Alu
chr1	144604425	C	T	0.00299	NBPF20	+	FALSE
chr17	25640011	A	G	0.00228	WSB1	+	TRUE	AluSx	SINE,Alu
chr1	19234103	G	A	0.00014	IFFO2	-	FALSE
chr1	155214017	C	A	0.00261	GBA	-	FALSE	AluSx3	SINE,Alu
chr7	5085646	C	T	0.00168	RBAK-RBAKDN,RBAK	+	FALSE
chr1	11084103	T	A	0.00162	TARDBP	+	FALSE
chr1	160967890	T	C	0.00876	F11R	-	TRUE	AluSp	SINE,Alu
chr3	44791554	T	C	7.29341E-07	KIAA1143	-	FALSE	AluJr	SINE,Alu
chr1	10517653	T	C	0.00792		.	FALSE	AluSx1	SINE,Alu
chr1	206516261	C	T	0.00179	SRGAP2	+	FALSE
chr5	6633042	C	T	0.00348	NSUN2	-	FALSE
chr16	88767769	G	C	0.00420	RNF166	-	FALSE
chr1	153720690	G	A	0.00550	INTS3	+	FALSE
chr1	6583593	T	C	0.00088	NOL9	-	TRUE	AluSq	SINE,Alu
chr1	65692499	C	T	0.00930	AK4	+	FALSE	(T)n	SINE,Alu

RBP	UPF1
Knock-Method	shRNA
RBP Family	UPF1_Zn_bind
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR689MIY
Platform	HiSeq
Pubmed ID	32252787

UPF1 - Target Gene Network