RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr12	133298025	A	G	6.18330E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	6283306	T	C	0.00047	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	85785549	T	C	0.00320	DDAH1	-	FALSE
chr17	4929861	A	G	0.00705	KIF1C	+	TRUE	AluJb	SINE,Alu
chr2	128950515	A	G	0.00052	UGGT1	+	TRUE	AluSc	SINE,Alu
chr2	191745647	C	T	2.95764E-05	GLS	+	FALSE
chr1	16889050	A	C	0.00669	NBPF1	-	FALSE
chr4	144475142	T	A	0.00375	SMARCA5	+	FALSE
chr3	9848222	A	T	0.00083	ARPC4,ARPC4-TTLL3	+	FALSE
chr10	104417856	T	A	0.00616	TRIM8	+	FALSE	(AAT)n	SINE,Alu
chr1	10517526	T	C	0.00364		.	FALSE	AluSx1	SINE,Alu
chr2	10270775	G	T	0.00953	RRM2	+	FALSE	AluSx	SINE,Alu
chr1	178447798	T	C	2.92578E-05	RASAL2	+	FALSE
chr2	206982358	T	C	0.00080		.	FALSE	AluSg7	SINE,Alu
chr4	39552646	T	C	0.00555	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr4	17628548	A	G	0.00991		.	FALSE	AluSz	SINE,Alu
chr3	45267321	C	T	0.00059	TMEM158	-	FALSE
chr5	40832548	A	T	0.00048	RPL37	-	FALSE
chr1	6582558	T	C	0.00030	NOL9	-	TRUE	AluSx1	SINE,Alu
chr1	119693495	A	G	0.00996	LOC101929147	+	TRUE	AluSx	SINE,Alu
chr4	57326156	A	G	0.00170	PAICS	+	TRUE	AluJr	SINE,Alu
chr2	129024408	G	A	0.00502	HS6ST1	-	FALSE
chr7	30536611	T	C	0.00421	GGCT	-	FALSE
chr1	10520331	C	T	0.00065		.	FALSE	AluSx1	SINE,Alu
chr1	19934758	C	G	1.75422E-05	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr6	13790848	T	C	0.00344	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr6	24720539	G	C	0.00225		.	FALSE
chr1	180063334	G	A	2.71425E-05	CEP350	+	FALSE
chr5	130540368	A	C	0.00420	LYRM7	+	FALSE	Tigger4a	SINE,Alu
chr2	178186556	G	A	0.00917	LOC100130691	-	FALSE
chr5	154194459	C	A	0.00832	LARP1	+	FALSE
chr2	32535836	A	G	0.00163		.	FALSE	AluJb	SINE,Alu
chr7	29962586	G	A	0.00051	SCRN1	-	FALSE
chr1	10520603	T	G	0.00838	DFFA	-	FALSE	AluSc8	SINE,Alu
chr3	172117458	A	C	0.00011	FNDC3B	+	FALSE
chr6	143832707	G	A	0.00418	FUCA2	-	FALSE	(GCA)n	SINE,Alu
chr1	14106402	A	T	0.00914	PRDM2	+	FALSE
chr1	204393480	T	A	0.00783	PIK3C2B	-	FALSE
chr7	64435684	T	G	0.00239	ZNF117	-	FALSE
chr3	45721922	A	G	0.00181	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr2	61369774	T	C	0.00267	LOC339803	-	TRUE	AluSx	SINE,Alu
chr1	46076467	A	G	0.00118	NASP	+	TRUE	AluSx	SINE,Alu
chr4	38945689	C	T	1.01800E-05	FAM114A1	+	FALSE	AluSc	SINE,Alu
chr1	17928	T	A	0.00956	WASH7P	-	FALSE
chr1	11782984	A	G	0.00542		.	FALSE	AluSx	SINE,Alu
chr16	31469051	T	C	0.00278		.	FALSE	AluSz	SINE,Alu
chr3	14986104	T	C	0.00621	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	10519888	T	C	0.00878		.	FALSE	AluJr	SINE,Alu
chr1	10519936	T	C	0.00072		.	FALSE	AluJr	SINE,Alu
chr5	68850922	G	C	0.00323	OCLN	+	FALSE	AluSx4	SINE,Alu
chr2	3592602	T	C	0.00232	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr1	46075791	A	G	0.00120	NASP	+	TRUE	AluSx4	SINE,Alu
chr3	49315576	T	C	0.00191	USP4	-	FALSE
chr1	179044100	A	G	0.00487	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	53292607	T	A	2.07283E-05	ZYG11B	+	FALSE
chr1	120695749	A	G	0.00130		.	FALSE
chr1	17733270	T	A	0.00088	RCC2	-	FALSE
chr21	40567667	A	G	0.00658	BRWD1	-	FALSE
chrX	77083939	T	C	5.71267E-05	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	1597423	C	T	1.10134E-13	CDK11B,SLC35E2B	-	FALSE
chr3	22424405	T	A	0.00766		.	FALSE
chr4	159176109	C	A	0.00042	TMEM144	+	FALSE	MIR	SINE,Alu
chr8	145139727	C	T	0.00458	GPAA1	+	FALSE
chr1	59124223	G	A	0.00256	MYSM1	-	FALSE	MIR3	SINE,Alu
chr14	53242417	T	C	0.00423	GNPNAT1	-	TRUE	AluJo	SINE,Alu
chr1	26158908	G	C	0.00181	MTFR1L,AUNIP	+,-	FALSE
chr1	28060574	A	G	0.00206	FAM76A	+	FALSE
chr3	183209036	T	C	1.78981E-05	KLHL6	-	TRUE	AluSq	SINE,Alu
chr5	37290400	T	C	0.00282		.	FALSE	AluSz	SINE,Alu
chr12	125512534	A	G	0.00024		.	FALSE
chr1	1251847	T	C	0.00999	CPSF3L	-	FALSE	AluSq2	SINE,Alu
chr1	1245164	C	T	0.00318	PUSL1	+	FALSE
chr1	36752811	C	T	2.19602E-12	THRAP3	+	FALSE
chr1	16933629	A	G	0.00310	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	93297609	C	T	8.96972E-06	RPL5	+	FALSE
chr3	107526033	T	A	0.00056	BBX	+	FALSE
chr1	44088547	C	A	0.00018	PTPRF	+	FALSE	A-rich	SINE,Alu
chr1	114443618	A	G	0.00910	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	180943529	C	T	0.00297	STX6	-	FALSE
chr11	6703162	A	T	0.00726	MRPL17	-	FALSE
chr1	6282426	T	C	0.00043	ICMT	-	TRUE	AluSz	SINE,Alu
chr3	176739663	A	G	5.46505E-07	TBL1XR1	-	FALSE
chr1	16929100	C	T	0.00249	NBPF1	-	FALSE	LTR16B2	SINE,Alu
chr1	10518734	T	C	0.00249		.	FALSE	AluSx1	SINE,Alu
chr1	25894466	A	C	0.00783	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr2	38971641	T	A	0.00071	SRSF7	-	FALSE
chr1	155161702	G	C	0.00020	MUC1	-	FALSE
chr1	32631809	C	T	1.50957E-07	KPNA6	+	FALSE
chr10	3208557	A	G	0.00128	PITRM1	-	FALSE
chr5	122165472	C	T	0.00147	SNX2	+	FALSE	(AC)n	SINE,Alu
chr1	28920823	A	G	0.00850	RAB42	+	FALSE	AluSx	SINE,Alu
chr7	24731065	C	T	0.00414	MPP6	+	FALSE	(TGTATG)n	SINE,Alu
chr1	567557	A	G	0.00649		.	FALSE
chr2	37330612	T	C	0.00030		.	FALSE	AluSq2	SINE,Alu
chr6	31324078	G	T	0.00480		.	FALSE
chr3	197682718	T	C	0.00163	IQCG,RPL35A	+,-	FALSE
chr1	212114662	A	G	0.00858	INTS7	-	FALSE
chr1	36067677	T	C	5.01583E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	61277775	A	G	0.00640	PEX13	+	TRUE	AluY	SINE,Alu
chr1	1459332	G	A	1.33172E-08	ATAD3A	+	FALSE
chr1	145513016	A	G	0.00069	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chrX	2824979	T	C	0.00049	ARSD	-	TRUE	AluSx1	SINE,Alu
chr1	97144886	A	G	0.00078		.	FALSE
chr2	28639641	C	G	0.00431		.	FALSE
chr1	78414310	C	A	0.00067	FUBP1	-	FALSE
chr2	9629414	A	G	0.00539	ADAM17	-	FALSE	AluY	SINE,Alu
chr2	37431485	A	G	0.00339	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr1	150704418	T	C	0.00420	CTSS	-	TRUE	AluJo	SINE,Alu
chr1	16946266	G	C	0.00750	CROCCP2	-	FALSE	MIRb	SINE,Alu
chrX	77083673	T	C	0.00090	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr1	28825760	A	G	0.00802	PHACTR4	+	TRUE	AluSp	SINE,Alu
chr1	10518613	A	T	0.00819		.	FALSE	AluSx1	SINE,Alu
chr3	15114759	G	A	1.99109E-05	RBSN	-	FALSE
chr7	79848337	G	A	0.00037	GNAI1	+	FALSE
chr2	132275343	G	T	0.00334	LOC150776	+	FALSE
chrM	10307	A	C	0.00588		.	FALSE
chr1	1595006	T	C	0.00156	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr22	37962318	T	C	0.00884	CDC42EP1	+	FALSE
chr2	191799592	A	G	2.07606E-11	GLS	+	TRUE
chr2	220406239	T	G	0.00014	CHPF	-	FALSE	MIRb	SINE,Alu
chr1	10520378	T	C	0.00115		.	FALSE	AluSx1	SINE,Alu
chr1	10519932	T	C	0.00012		.	FALSE	AluJr	SINE,Alu
chr1	36388202	T	G	0.00707	AGO1	+	FALSE	(GCCT)n	SINE,Alu
chr2	3592638	T	C	0.00941	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr2	74375276	A	C	0.00328	BOLA3-AS1	+	FALSE
chr1	109475629	A	G	0.00305	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr3	15113810	T	C	0.00201	RBSN	-	TRUE	AluSz6	SINE,Alu
chr19	57816261	A	G	0.00156		.	FALSE	AluY	SINE,Alu
chr1	10521254	T	C	0.00522	DFFA	-	TRUE	AluY	SINE,Alu
chr7	72480095	A	G	0.00590	PMS2P2	+	FALSE
chr3	155660279	A	G	0.00594		.	FALSE
chr1	145689537	A	G	0.00341	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr3	52109841	T	C	7.35943E-05	POC1A	-	FALSE
chr2	219433597	G	A	0.00328	CNOT9	+	FALSE
chr1	1653046	T	A	0.00986	CDK11B,CDK11A	-	FALSE
chr3	10192785	A	G	0.00741	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	23689522	G	T	0.00570	ZNF436	-	FALSE
chr1	46828700	A	G	0.00012	NSUN4	+	FALSE
chr4	13604418	G	C	2.95746E-07	BOD1L1	-	FALSE
chr1	120164552	G	A	0.00023	ZNF697	-	FALSE
chr2	38522141	G	T	0.00109	ATL2	-	FALSE
chr6	52267967	A	C	0.00424	PAQR8	+	FALSE
chr3	179117128	T	C	0.00112	GNB4	-	TRUE	AluSz	SINE,Alu
chr2	37429738	A	G	0.00203	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	23636452	A	G	0.00294	HNRNPR	-	FALSE
chr12	51325349	C	G	0.00225	METTL7A	+	FALSE	AluSq2	SINE,Alu
chr6	42855057	A	G	0.00034	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	1650832	A	G	0.00407	CDK11B,CDK11A	-	FALSE
chr8	30536152	T	C	0.00015	GSR	-	TRUE	AluJr	SINE,Alu
chr1	16944809	G	C	0.00072	CROCCP2	-	FALSE
chr2	232319499	T	A	0.00165	NCL	-	FALSE
chr1	145512937	A	G	1.47906E-06	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr3	10193743	T	C	0.00456	VHL	+	FALSE	AluJr	SINE,Alu
chr14	31916944	T	C	1.05468E-06	LOC101927124,DTD2	+,-	FALSE	AluSc8	SINE,Alu
chr1	1650797	A	G	0.00325	CDK11B,CDK11A	-	FALSE
chr6	116600774	C	G	0.00180	DSE,TSPYL1	+,-	FALSE
chr3	125248854	A	C	0.00014	OSBPL11	-	FALSE
chr7	94297293	G	T	0.00573	PEG10	+	FALSE
chr1	217602945	G	A	0.00116	GPATCH2	-	FALSE	AluSx1	SINE,Alu
chr1	6583592	T	C	0.00939	NOL9	-	TRUE	AluSq	SINE,Alu
chr1	6582353	T	C	0.00415	NOL9	-	TRUE	AluSx1	SINE,Alu
chr14	90509582	T	C	0.00017	TDP1	+	FALSE
chr1	212587320	T	C	0.00023	TMEM206	-	FALSE
chr1	28661653	A	G	9.75782E-05	MED18	+	TRUE	AluSg	SINE,Alu
chr1	26143725	A	T	0.00116	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	1570928	G	T	0.00173	CDK11B	-	FALSE
chr1	6283306	T	C	0.00558	ICMT	-	TRUE	AluSx3	SINE,Alu
chr3	182614493	T	C	0.00036	ATP11B	+	FALSE
chr1	77759578	A	G	0.00492	AK5	+	FALSE
chr1	149943157	G	A	0.00024	OTUD7B	-	FALSE
chr3	121154974	T	C	0.00183	POLQ	-	FALSE
chr1	6282401	T	C	0.00665	ICMT	-	TRUE	AluSz	SINE,Alu
chr19	19793168	A	G	0.00481	ZNF101	+	TRUE	AluSz	SINE,Alu
chr3	101542436	A	G	0.00023	NXPE3	+	TRUE	AluJr	SINE,Alu
chrX	3526615	G	T	0.00820	PRKX	-	FALSE
chr1	1593023	G	C	2.84325E-05	CDK11B,SLC35E2B	-	FALSE
chr1	20945264	A	C	0.00605	CDA	+	FALSE
chr1	100548868	T	C	8.06321E-05	MFSD14A	+	FALSE
chr1	28826130	A	G	0.00207	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr6	52226984	G	A	0.00127	PAQR8	+	FALSE	(GCTCGG)n	SINE,Alu
chr2	242447628	T	G	0.00674	STK25	-	FALSE
chr2	103333656	T	A	0.00488	MFSD9	-	FALSE	AluYm1	SINE,Alu
chr1	226573364	A	G	0.00128	PARP1	-	FALSE
chr1	148752615	C	A	0.00042		.	FALSE
chr4	71859287	C	G	0.00557	DCK	+	FALSE
chr1	52817434	T	C	0.00219	CC2D1B	-	TRUE	AluSg4	SINE,Alu
chr1	31351513	G	A	0.00265	SDC3	-	FALSE
chr7	66421684	T	G	0.00042	TMEM248	+	FALSE	AluJr	SINE,Alu
chr1	29519595	T	C	0.00208	MECR	-	TRUE	AluJb	SINE,Alu
chr3	49395694	T	C	0.00074	GPX1	-	FALSE
chr11	76733945	A	T	0.00931	ACER3	+	FALSE	A-rich	SINE,Alu
chr1	27678721	A	G	0.00030	SYTL1	+	TRUE	AluSx1	SINE,Alu
chr15	42503335	T	C	0.00023	TMEM87A	-	FALSE	(T)n	SINE,Alu
chr2	47387305	G	T	0.00322	CALM2	-	FALSE
chr3	17201882	C	T	0.00282	TBC1D5	-	FALSE
chr17	4928967	T	G	0.00921	KIF1C	+	FALSE	AluY	SINE,Alu
chr7	64435677	G	A	0.00366	ZNF117	-	FALSE
chr6	24720534	T	C	0.00053		.	FALSE
chr3	53263333	G	A	0.00329	TKT	-	FALSE
chr12	56510696	A	T	0.00015	RPL41	+	FALSE
chr1	162494683	G	T	0.00269	UHMK1	+	FALSE	AluSg4	SINE,Alu
chr1	10043053	A	G	0.00042	NMNAT1	+	TRUE	AluSc	SINE,Alu

RBP	SUGP2
Knock-Method	shRNA
RBP Family	Surp
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR192BPV
Platform	HiSeq
Pubmed ID	32252787

SUGP2 - Target Gene Network