RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	120497841	T	C	0.00673	NOTCH2	-	FALSE
chr7	143003526	A	T	0.00050	CASP2	+	FALSE	AluY	SINE,Alu
chr12	69237077	A	G	0.00445	MDM2	+	TRUE	(GA)n	SINE,Alu
chr16	19725719	C	T	0.00471	KNOP1	-	FALSE
chr5	64023977	C	T	0.00340	SREK1IP1	-	FALSE	(TTTTTTT)n	SINE,Alu
chr6	150045926	T	C	0.00053	NUP43	-	TRUE	AluSq	SINE,Alu
chr2	118854088	C	T	0.00543	INSIG2	+	FALSE
chr1	214529170	T	C	0.00670	PTPN14	-	TRUE
chr1	15989141	C	G	0.00364		.	FALSE
chr1	36529549	A	G	0.00806		.	FALSE	AluJr	SINE,Alu
chr7	44841489	A	G	0.00015	PPIA	+	TRUE	AluJr	SINE,Alu
chr1	59246520	A	C	7.56706E-05	JUN	-	FALSE
chr5	72801321	T	A	0.00427	BTF3	+	FALSE
chr1	19232211	G	A	0.00552	IFFO2	-	FALSE	(GT)n	SINE,Alu
chr1	6659505	G	A	0.00405	KLHL21	-	FALSE
chr1	53288924	A	G	0.00099	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	24022910	G	A	0.00036	RPL11	+	FALSE
chr19	59093999	A	G	0.00018	CENPBD1P1	+	TRUE	AluY	SINE,Alu
chr2	113287424	T	A	0.00616	TTL	+	FALSE
chr1	145513090	A	G	0.00017	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	327441	A	G	1.08612E-09		.	FALSE
chr1	43917637	G	A	0.00164	SZT2,HYI	+,-	FALSE
chr2	61152521	G	A	0.00134	REL	+	FALSE
chr5	40828062	A	G	0.00733	LOC100506548	-	FALSE
chrX	133930368	T	G	0.00126	FAM122B	-	FALSE	G-rich	SINE,Alu
chr1	46828700	A	G	0.00273	NSUN4	+	FALSE
chr1	182360930	A	G	0.00506	GLUL	-	FALSE
chr1	17393261	T	C	3.60266E-05	PADI2	-	FALSE
chr9	133579674	A	G	0.00018	EXOSC2	+	TRUE	AluSx3	SINE,Alu
chr16	46831408	T	C	0.00852		.	FALSE	AluSz	SINE,Alu
chr1	144823139	G	A	0.00941	NBPF20,NBPF9	+	FALSE
chr1	79110518	A	G	0.00997	IFI44L	+	FALSE
chr1	3545191	C	T	0.00165	TPRG1L	+	FALSE
chr12	120899168	A	G	6.24570E-05	GATC	+	TRUE	AluJr	SINE,Alu
chr1	110951224	A	G	0.00352	LAMTOR5-AS1	+	TRUE	AluJr	SINE,Alu
chr1	180167090	C	T	0.00607	QSOX1	+	FALSE
chr1	36770045	T	C	0.00943	THRAP3	+	FALSE
chr1	154438880	T	C	0.00170	IL6R	+	FALSE
chr22	16148322	A	G	0.00933		.	FALSE	L1ME2z	SINE,Alu
chr11	125526125	A	G	0.00374	CHEK1	+	TRUE	FRAM	SINE,Alu
chr4	39550085	T	C	3.55103E-05	UGDH-AS1,SMIM14	+,-	FALSE	FLAM_C	SINE,Alu
chr1	36067811	T	C	0.00467	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	105271344	A	G	0.00460	ALCAM	+	FALSE
chr1	21793735	C	G	0.00405	NBPF3	+	FALSE
chr8	91637754	A	T	0.00297	TMEM64	-	FALSE
chr3	33186087	A	G	1.22529E-05	CRTAP	+	FALSE	LTR16A1	SINE,Alu
chr6	160113872	A	G	0.00863	SOD2	-	FALSE
chr1	26755536	A	G	0.00515	LIN28A	+	TRUE	AluSc	SINE,Alu
chr1	160965379	T	C	0.00081	F11R	-	TRUE	AluSc	SINE,Alu
chr14	75202287	T	C	0.00757	FCF1	+	FALSE	AluSc	SINE,Alu
chr1	1647814	T	C	7.10450E-06	CDK11B,CDK11A	-	FALSE
chr1	150446056	G	A	0.00945	RPRD2	+	FALSE	(A)n	SINE,Alu
chr1	115299506	A	C	0.00076	CSDE1	-	FALSE
chr1	17739586	G	A	0.00093	RCC2	-	FALSE
chr1	220231959	T	C	0.00464	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	16892918	T	C	0.00158	NBPF1	-	FALSE
chr5	151041885	G	T	0.00644	SPARC	-	FALSE
chr1	28835201	C	T	0.00371	SNHG3,RCC1,SNORA73B	+	FALSE	U17	SINE,Alu
chr2	86249930	T	C	0.00054	LOC90784	-	TRUE	AluJr	SINE,Alu
chr3	10192633	A	G	8.20807E-06	VHL	+	TRUE	AluSx1	SINE,Alu
chr17	15434181	T	C	0.00011	TVP23C-CDRT4,TVP23C	-	TRUE	AluJb	SINE,Alu
chr1	35648842	G	A	0.00015	SFPQ	-	FALSE	AluSx3	SINE,Alu
chr3	149686507	T	C	0.00193	PFN2	-	FALSE
chr3	45721990	A	G	0.00022	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	114306369	A	T	0.00341	RSBN1	-	FALSE
chr6	75797290	T	A	0.00147	COL12A1	-	FALSE
chr3	45266555	T	C	1.22536E-07	TMEM158	-	FALSE
chr1	10042955	A	G	0.00131	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr4	177252238	A	G	9.63526E-05	SPCS3	+	TRUE
chr5	43574976	T	C	0.00613	NNT-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	43167907	T	C	0.00072	YBX1	+	FALSE
chr1	89447715	T	G	0.00137	KYAT3,RBMXL1	-	FALSE
chr1	54571374	A	G	0.00916	TCEANC2	+	TRUE	AluSc	SINE,Alu
chr12	93192790	G	T	0.00161	EEA1	-	FALSE
chr6	159395409	T	C	0.00136		.	FALSE
chr7	91742141	T	C	0.00100	CYP51A1	-	FALSE	AluSx3	SINE,Alu
chr1	10043053	A	G	0.00318	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr2	183622547	T	G	0.00346	DNAJC10	+	FALSE
chr11	63394020	A	T	0.00175	ATL3	-	FALSE
chr1	36067677	T	C	5.01583E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	46774813	C	G	0.00766	UQCRH	+	FALSE
chr2	85776648	T	C	0.00765	GGCX	-	TRUE	AluSz6	SINE,Alu
chr1	36068276	T	C	0.00110	PSMB2	-	TRUE	AluSc	SINE,Alu
chr8	56985609	G	T	0.00134	RPS20	-	FALSE
chr5	37290554	T	C	0.00010		.	FALSE	AluSz	SINE,Alu
chr5	37290435	T	C	8.22232E-07		.	FALSE	AluSz	SINE,Alu
chr4	13602231	G	A	0.00646	BOD1L1	-	FALSE
chr3	189675270	T	G	0.00039	P3H2	-	FALSE
chr1	33149414	A	G	0.00722	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr15	38780594	C	T	0.00135	RASGRP1	-	FALSE
chr1	6283548	A	G	0.00286	ICMT	-	FALSE
chr3	152555188	G	T	0.00016	P2RY1	+	FALSE
chr17	49041692	T	C	2.35976E-05	SPAG9	-	TRUE	AluSx	SINE,Alu
chr1	52375564	T	C	0.00866	RAB3B	-	FALSE
chr1	46075791	A	G	0.00120	NASP	+	TRUE	AluSx4	SINE,Alu
chr3	113528895	A	T	0.00191	ATP6V1A	+	FALSE	AluSp	SINE,Alu
chr1	179042905	A	G	0.00034	FAM20B	+	TRUE
chr1	40537940	A	C	0.00155	CAP1	+	FALSE	(A)n	SINE,Alu
chr14	100762690	T	C	0.00461	SLC25A29	-	TRUE	AluJo	SINE,Alu
chr3	44791553	T	C	0.00298	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr1	36067925	T	C	1.81623E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	128061053	A	G	0.00184	MAP3K2	-	FALSE
chr1	173836602	G	A	0.00886	GAS5	-	FALSE	AluSx	SINE,Alu
chr14	76662778	C	T	0.00261	GPATCH2L	+	FALSE
chr1	154989595	T	C	0.00264	ZBTB7B	+	FALSE
chr1	193058937	C	T	0.00195	TROVE2	+	FALSE	AluSc	SINE,Alu
chr14	75202734	A	G	0.00016	FCF1	+	TRUE	AluSc	SINE,Alu
chr2	102484488	A	G	0.00192	MAP4K4	+	FALSE
chr6	24719404	C	A	0.00024		.	FALSE
chr2	61386572	C	G	0.00821	C2orf74	+	FALSE	AluSz	SINE,Alu
chr1	9331255	A	G	0.00992	H6PD	+	TRUE	AluSx	SINE,Alu
chr2	201774342	T	C	0.00127		.	FALSE	AluSz	SINE,Alu
chr1	146215189	G	C	0.00226	NBPF20,NBPF10,NBPF25P	+	FALSE
chr1	109465171	T	A	0.00989	GPSM2	+	FALSE
chr3	30733403	A	T	0.00110	TGFBR2	+	FALSE	(TA)n	SINE,Alu
chr1	10366487	T	G	0.00187	KIF1B	+	FALSE
chr1	94351063	A	T	0.00855	GCLM	-	FALSE
chr12	10311410	A	G	0.00909	OLR1	-	FALSE
chr7	6501830	G	A	0.00217	KDELR2	-	FALSE
chr2	91805928	T	C	0.00000		.	FALSE	MLT1H1	SINE,Alu
chr1	45975574	A	G	0.00613	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr2	86252198	T	C	0.00076	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr8	143413136	C	T	0.00267	TSNARE1	-	FALSE
chr13	47345467	G	T	0.00495	ESD	-	FALSE
chr1	9162243	T	C	0.00031		.	FALSE	AluSx	SINE,Alu
chr10	120920588	T	C	0.00304	SFXN4	-	FALSE
chr7	48146088	A	G	0.00825	UPP1	+	TRUE	AluSq	SINE,Alu
chr1	36068276	T	C	0.00067	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	61277775	A	G	0.00640	PEX13	+	TRUE	AluY	SINE,Alu
chr14	75202402	A	G	0.00141	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	171751051	A	G	0.00522	METTL13	+	FALSE
chr1	65901227	A	T	0.00914	LEPR,LEPROT	+	FALSE	AluYh3	SINE,Alu
chr1	6585331	T	C	0.00094	NOL9	-	TRUE	FAM	SINE,Alu
chr1	6583066	T	C	0.00209	NOL9	-	TRUE	AluSx4	SINE,Alu
chr7	75958147	T	A	0.00917	YWHAG	-	FALSE
chr11	31452571	A	G	0.00084	DNAJC24	+	TRUE
chr2	31423365	G	T	4.32087E-05	CAPN14	-	FALSE
chr11	45827050	G	C	0.00045	SLC35C1	+	FALSE
chr1	145688973	A	G	7.17653E-05	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr14	53243545	T	C	3.01634E-08	GNPNAT1	-	TRUE	AluSx3	SINE,Alu
chr7	6505901	T	C	1.53488E-09	KDELR2	-	FALSE
chr1	16895634	T	G	0.00472	NBPF1	-	FALSE
chr1	154557171	G	A	0.00329	ADAR	-	FALSE	A-rich	SINE,Alu
chr1	183515428	G	A	0.00232	SMG7	+	FALSE
chr8	141530799	G	A	0.00525		.	FALSE
chr1	179044239	A	G	0.00143	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	1684346	G	C	0.00504	NADK	-	FALSE
chr1	148251875	T	C	0.00436	NBPF8,NBPF14,NBPF9	-	FALSE
chr2	55516911	A	G	0.00719	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr12	9464358	A	G	0.00056	LOC642846	+	FALSE
chr19	39981168	A	G	0.00446	TIMM50	+	TRUE	AluJr	SINE,Alu
chr1	6477671	G	T	0.00620	HES2	-	FALSE	AluSx	SINE,Alu
chr1	26755510	A	G	0.00013	LIN28A	+	TRUE	AluSc	SINE,Alu
chr3	45960556	C	T	0.00500	FYCO1	-	FALSE
chr1	24128467	C	T	0.00086	HMGCL	-	FALSE
chr1	17313654	C	T	0.00886	ATP13A2	-	FALSE
chr1	144813815	A	G	2.28281E-05	NBPF20,NBPF9	+	FALSE
chr6	42855972	A	G	3.93003E-05	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	9910358	T	C	0.00083	CTNNBIP1	-	FALSE
chr22	39127060	A	G	0.00647	GTPBP1	+	FALSE
chr1	16945027	T	C	0.00819	CROCCP2	-	FALSE	L1ME3Cz	SINE,Alu
chr1	1419130	A	G	0.00107	ATAD3B	+	FALSE	AluSz	SINE,Alu
chr4	120216206	C	T	0.00205	USP53	+	FALSE
chr1	156011444	T	C	0.00483	UBQLN4	-	FALSE
chr1	6282259	T	C	0.00072	ICMT	-	TRUE	AluSz	SINE,Alu
chr19	9672318	T	C	2.91158E-05		.	FALSE	AluJr	SINE,Alu
chr15	93198678	T	C	0.00064	FAM174B	-	FALSE	(GCCGCT)n	SINE,Alu
chr1	53290057	A	G	0.00142	ZYG11B	+	TRUE	AluSg4	SINE,Alu
chr2	179973026	T	C	0.00210	SESTD1	-	FALSE
chr1	1534676	C	T	4.01953E-10	FNDC10	-	FALSE
chr1	8921471	C	T	6.67995E-05	ENO1	-	FALSE
chr11	65764470	T	C	0.00435	EIF1AD	-	TRUE	AluSz6	SINE,Alu
chr2	200792052	G	A	0.00378	C2orf69	+	FALSE
chr5	141691252	T	C	0.00596	SPRY4	-	FALSE
chr3	10192608	A	G	0.00030	VHL	+	TRUE	AluSx1	SINE,Alu
chr17	31258352	G	A	0.00417	TMEM98	+	FALSE
chr2	3193040	G	A	0.00650	TSSC1	-	FALSE
chr2	196600548	G	T	0.00036	SLC39A10	+	FALSE
chr20	43707842	A	G	0.00100	STK4	+	TRUE	AluJb	SINE,Alu
chr1	16890130	A	C	0.00054	NBPF1	-	FALSE
chr1	10520331	C	T	2.36721E-05		.	FALSE	AluSx1	SINE,Alu
chr1	173863209	G	A	0.00156		.	FALSE
chr7	21941587	G	C	5.72060E-05	CDCA7L	-	FALSE
chr1	109818161	C	T	0.00840	CELSR2	+	FALSE
chr1	246829742	T	C	0.00037	CNST	+	FALSE	(TGTG)n	SINE,Alu
chr2	24225006	A	G	0.00277		.	FALSE	AluSx	SINE,Alu
chr1	220231276	T	C	0.00545	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	32697109	A	G	0.00015	EIF3I	+	FALSE	AluSp	SINE,Alu
chr1	149913727	T	C	0.00721	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr1	25688276	A	G	0.00187	TMEM50A	+	FALSE
chr1	142804471	C	G	0.00555		.	FALSE	MIRb	SINE,Alu
chr5	154196577	C	T	0.00906	LARP1	+	FALSE
chr1	24288535	A	T	0.00271	PNRC2	+	FALSE
chr2	201774264	T	C	0.00639		.	FALSE	AluSz	SINE,Alu
chr7	143003524	G	T	3.66232E-05	CASP2	+	FALSE	AluY	SINE,Alu
chr1	78414308	T	C	0.00024	FUBP1	-	FALSE
chr1	45244053	A	G	0.00562	RPS8	+	FALSE
chr4	184238324	G	A	0.00870	WWC2	+	FALSE
chr5	137754695	T	C	0.00266	KDM3B	+	FALSE
chr2	37327665	T	C	2.45403E-06		.	FALSE
chr1	143135240	C	T	0.00391	LOC102723769	-	FALSE
chr1	78414310	C	A	9.26299E-05	FUBP1	-	FALSE
chr1	10518733	T	C	0.00050		.	FALSE	AluSx1	SINE,Alu

RBP	AKAP8
Knock-Method	shRNA
RBP Family	AKAP95
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR958KSY
Platform	HiSeq
Pubmed ID	32252787

AKAP8 - Target Gene Network