Dataset Overview
RBPSUPT6H
Knock-MethodshRNA
RBP FamilyS1
Biosample NameHepG2
Tissue TypeLiver
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR281KCL
PlatformHiSeq
Pubmed ID32252787

SUPT6H - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of SUPT6H
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of SUPT6H


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr1205738302GA0.00247RAB29-FALSE
chr1610624996TC0.00059EMP2-TRUEAluSx3SINE,Alu
chr5149363414AG0.00503SLC26A2+TRUEAluJrSINE,Alu
chr3196670090GA0.00059NCBP2-AS2+FALSE
chr613788342TC0.00454MCUR1-TRUEAluSxSINE,Alu
chr573932315TC0.00420ENC1-FALSE
chr17833544TC0.00186VAMP3+FALSE
chr2232319612AT5.77221E-05NCL-FALSE
chr116912014AC0.00199NBPF1-FALSE
chr1202696878CT0.00159KDM5B-FALSE
chr124864008AG0.00601.FALSE
chr152520867TA0.00206TXNDC12-FALSE
chr116894514CT0.00270NBPF1-FALSE
chr9132575836AC0.00546TOR1A-FALSE
chr1051612914TC0.00063TIMM23B,TIMM23+,-FALSE
chr1899810GA2.29962E-09KLHL17+FALSE
chr110519048TC0.00728.FALSEAluSx3SINE,Alu
chr21168781CA0.00650SNTG2+FALSE
chr2208619699AG0.00741CCNYL1+TRUEAluJbSINE,Alu
chr399516962CA2.05391E-14MIR548G-FALSE
chr110043504AG0.00213NMNAT1+FALSEAluSx3SINE,Alu
chr4185309400TA0.00250IRF2-FALSE(GGGAT)nSINE,Alu
chr352289709GC4.88711E-11WDR82-FALSEMIRSINE,Alu
chr417633798AG0.00053FAM184B-FALSEAluSzSINE,Alu
chr1145512024AG0.00041NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr136386905GT0.00065AGO1+FALSE
chr1145283733AG0.00458NBPF20,NOTCH2NL+FALSE
chr7130629624TC0.00568LINC-PINT-TRUE
chr119542410TC0.00270LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1431916792CT3.89824E-05LOC101927124,DTD2+,-FALSEAluSc8SINE,Alu
chr119586532AG7.13982E-05MRTO4+TRUEAluSzSINE,Alu
chr642856019AG0.00184RPL7L1+TRUEAluSzSINE,Alu
chr1155582104TA0.00099MSTO1+FALSE
chr657034842TG0.00581ZNF451,LOC101927211+,-FALSE
chr417629921AG0.00454.FALSEMER90SINE,Alu
chr2215674224GA9.97816E-05BARD1-FALSE
chr1778226862AC0.00590SLC26A11+FALSE
chr416258050CT0.00617TAPT1-AS1+FALSE
chr133148696AG0.00363SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr123833608GA0.00890E2F2-FALSE
chr1327538AG0.00010.FALSE
chr417802819TC0.00409DCAF16-TRUEAluSzSINE,Alu
chr167874697TC4.44446E-05SERBP1-TRUEAluSx3SINE,Alu
chr136067677TC0.00462PSMB2-TRUEAluSzSINE,Alu
chr1761502460TA0.00161TANC2+FALSE
chr128826085AG0.00153PHACTR4+TRUEAluJbSINE,Alu
chr1117531813TC0.00751PTGFRN+FALSE
chr1204526713AG0.00078MDM4+TRUEAluSxSINE,Alu
chr116945227GT0.00139CROCCP2-FALSE
chr250147865TA0.00112NRXN1-FALSE(GT)nSINE,Alu
chr1921907988CT0.00295ZNF100-FALSE
chr132373563GA0.00089PTP4A2-FALSE
chr144088547CA0.00018PTPRF+FALSEA-richSINE,Alu
chr1749042206TC0.00030SPAG9-TRUEAluJbSINE,Alu
chr136067749TC0.00748PSMB2-TRUEAluSzSINE,Alu
chr1740466890GT0.00260STAT3-FALSEAluSc8SINE,Alu
chr1142688506TC4.54862E-05.FALSE
chr11344998AG0.00461.FALSEAluSgSINE,Alu
chr128825331AG0.00563PHACTR4+TRUEAluSgSINE,Alu
chr424578019GA0.00000DHX15-FALSE
chr19740895AT0.00136PIK3CD,PIK3CD-AS2+,-FALSEMLT1F1SINE,Alu
chr439460539GA0.00323RPL9-FALSE
chr1206579936AG0.00424SRGAP2+FALSE
chr124798383CT0.00546NIPAL3+FALSE
chr1146650916CT0.00025PDIA3P1+FALSE
chr167874697TC0.00186SERBP1-TRUEAluSx3SINE,Alu
chr417803604TC0.00414DCAF16-TRUEAluYSINE,Alu
chr1220231959TC0.00464RNU5F-1,BPNT1+,-FALSEAluSzSINE,Alu
chr1120611964GC0.00130NOTCH2-FALSE
chr2203922075AG0.00561NBEAL1+FALSE
chr724731065CT0.00414MPP6+FALSE(TGTATG)nSINE,Alu
chr344791569TC0.00685KIAA1143-TRUEAluJrSINE,Alu
chr121793735CG0.00405NBPF3+FALSE
chr19163328TC0.00287.FALSEAluSpSINE,Alu
chr1942376702AG6.18708E-08.FALSEAluSpSINE,Alu
chr269690885TC0.00970AAK1-TRUEAluSx3SINE,Alu
chr439116911TC0.00303KLHL5+FALSE
chr23622912GT0.00000RPS7+FALSE
chr128825465AG0.00496PHACTR4+TRUEAluSgSINE,Alu
chr794060363TG2.98576E-06COL1A2+FALSE
chr132799436CT0.00490MARCKSL1-FALSE
chr238971644TG0.00021SRSF7-FALSE
chr1765334753TC4.53868E-08PSMD12-TRUEAluSqSINE,Alu
chr315115270GT0.00177RBSN-FALSE
chr1146400122CG0.00039NBPF20,NBPF10,NBPF25P,NBPF12+FALSE
chr16282295TC0.00060ICMT-TRUEAluSzSINE,Alu
chr16583538TC0.00455NOL9-TRUEAluSqSINE,Alu
chr3141879810TC0.00784GK5-FALSEAluJrSINE,Alu
chr333138549GA2.02580E-06GLB1-FALSE
chr980333361CT0.00382GNAQ-FALSE
chr2045839076AT0.00178ZMYND8-FALSE(T)nSINE,Alu
chr19643107AG0.00859.FALSEAluSxSINE,Alu
chr228002602CA0.00037MRPL33+FALSE
chr477997064AG0.00283CCNI-FALSE(A)nSINE,Alu
chr1165764473CG0.00403EIF1AD-FALSEAluSz6SINE,Alu
chr56491892GA0.00707UBE2QL1+FALSE
chr417803681TC3.85233E-06DCAF16-TRUEAluYSINE,Alu
chr12133298417AG0.00084PGAM5+TRUEAluSpSINE,Alu
chr110041422AG0.00115NMNAT1+TRUEAluYj4SINE,Alu
chr2208619377AG0.00769CCNYL1+TRUEFAMSINE,Alu
chr398518156TA7.17121E-05DCBLD2-FALSE
chr1167389822CT0.00935POU2F1+FALSE
chr128608338AG0.00341SESN2+FALSE
chr111785234AG0.00339.FALSEAluJrSINE,Alu
chr210586904CT0.00041ODC1,SNORA80B-FALSE
chr5130540369CA0.00126LYRM7+FALSETigger4aSINE,Alu
chr270131584GA0.00366SNRNP27+FALSE
chr178414329GA0.00635FUBP1-FALSEA-richSINE,Alu
chr110517273TC0.00583.FALSEAluJrSINE,Alu
chr194423353GA0.00057CHAF1A+FALSEGA-richSINE,Alu
chr286249930TC0.00269LOC90784-TRUEAluJrSINE,Alu
chr1180169330CT0.00015FLJ23867+FALSEMIRSINE,Alu
chr119542401TC0.00010LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1179045500CA0.00043FAM20B+FALSE
chr1949608GA0.00435ISG15+FALSE
chr110517635TC7.30839E-07.FALSEAluSx1SINE,Alu
chr1205501469AG0.00113CDK18+FALSE
chr2242384368GA0.00031FARP2+FALSEAluJrSINE,Alu
chr2201774185TC6.12175E-05.FALSEAluSzSINE,Alu
chr41006333GA0.00117FGFRL1+FALSE(CTG)nSINE,Alu
chr122419434TG0.00649CDC42+FALSE
chr11647814TC7.10450E-06CDK11B,CDK11A-FALSE
chr1742876730TC0.00024GJC1-TRUEAluSz6SINE,Alu
chr1119427687GC0.00823TBX15-FALSE
chr132374019GA0.00297PTP4A2-FALSE
chr261764916AC0.00361XPO1-FALSE(AC)nSINE,Alu
chr146660295TC0.00871POMGNT1-FALSE
chr115394279GC0.00215KAZN+FALSE
chr4124237124AG0.00119SPATA5+TRUEAluJrSINE,Alu
chr19161090AG0.00068.FALSEAluJbSINE,Alu
chr133148740AG0.00210SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr117395521GA0.00788PADI2-FALSE
chr16697343CT0.00054DNAJC11-FALSE
chr1156565057TC0.00423GPATCH4-FALSE
chr413604034TC3.45500E-11BOD1L1-FALSE
chr285132773CA5.10736E-05TMSB10+FALSE
chr193308173TG0.00380FAM69A-FALSE
chr3196728813CT0.00068MELTF-FALSE
chr13730332TC9.76659E-06CEP104-TRUEAluSx3SINE,Alu
chr1145283718GA0.00989NBPF20,NOTCH2NL+FALSE
chr11570928GT0.00173CDK11B-FALSE
chr1226333561AG0.00373ACBD3-FALSE
chr1453242354TC3.85910E-06GNPNAT1-TRUEAluJoSINE,Alu
chr398515569CT3.10862E-15DCBLD2-FALSE
chr237329238TC0.00754.FALSEAluJr4SINE,Alu
chr812283473CT0.00582FAM86B2-FALSE
chr848890109AG0.00750MCM4+TRUEAluJbSINE,Alu
chr1120166681GA0.00241ZNF697-FALSE
chr348787051TC0.00105PRKAR2A-TRUEAluSx3SINE,Alu
chr119542415TC0.00204LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr19162929CG0.00584.FALSE
chr12133298095AG0.00081PGAM5+TRUEAluJoSINE,Alu
chr1488933002CG0.00459PTPN21-FALSE
chr642856064AG0.00019RPL7L1+TRUEAluSzSINE,Alu
chr16583138TC0.00010NOL9-TRUEAluSx4SINE,Alu
chr314175262TC3.06250E-10TMEM43+FALSE
chr124710405AG0.00246STPG1-FALSE
chr1160967855TC0.00042F11R-TRUEAluSpSINE,Alu
chr133148691AG0.00032SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr1741144251TG0.00014RUNDC1+FALSE
chr8117858600TA0.00015RAD21-FALSE
chr1146649884TA0.00338PDIA3P1+FALSE
chr285773623TC0.00203GGCX-TRUEAluSx1SINE,Alu
chr133149486AG0.00528SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr110042955AG0.00430NMNAT1+TRUEAluScSINE,Alu
chr110521200TC0.00013DFFA-TRUEAluYSINE,Alu
chrX3526658AT0.00152PRKX-FALSE(AC)nSINE,Alu
chr1205581853CT0.00171ELK4-FALSE
chr1114443475AG0.00538AP4B1-AS1,AP4B1+,-FALSEAluSpSINE,Alu
chr1911256725TC7.46879E-09SPC24-TRUEAluJr4SINE,Alu
chr1155868177GA7.38851E-05RIT1-FALSE
chr167874731TC0.00613SERBP1-TRUEAluSx3SINE,Alu
chr1145281543CT0.00028NBPF20,NOTCH2NL+FALSE
chr8104312341AG0.00692FZD6+FALSE
chr199673275TC0.00081.FALSETigger1SINE,Alu
chr275118856TC1.43220E-05HK2+FALSE(ATTTTA)nSINE,Alu
chr2170403030TC0.00294FASTKD1-FALSE
chr1919791273AG0.00121ZNF101+TRUEAluSq2SINE,Alu
chr133148795AG0.00513SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr13416449CA0.00748MEGF6-FALSE
chr1266516911AT0.00067LLPH-FALSE
chr1115313051TC0.00853SIKE1-FALSE
chr1145512024AG0.00084NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr1160966434TC0.00175F11R-TRUEAluSgSINE,Alu
chr116889639TC0.00524NBPF1-TRUE
chr229135468CG0.00217WDR43+FALSE
chr631656514CT0.00325.FALSE
chrX2824343TC0.00108ARSD-TRUEAluJbSINE,Alu
chr273339708GA0.00991RAB11FIP5-FALSE
chr116889563CA0.00037NBPF1-FALSE
chr1089005496TG0.00138NUTM2A-AS1-FALSEMSTB1SINE,Alu
chr2114220055TC9.23000E-05CBWD2+FALSE
chr5135388663AG1.64165E-07TGFBI+FALSE
chr357548976AG0.00132PDE12+TRUEFRAMSINE,Alu
chr7100279138AT0.00741GIGYF1-FALSEA-richSINE,Alu
chr1179829584TC0.00204TOR1AIP2-TRUEAluJrSINE,Alu
chr3194362721GA5.25740E-07LSG1-FALSE
chr1234740975GA0.00106IRF2BP2-FALSE
chr5172461896TA0.00335ATP6V0E1+FALSE
chr165897981GA0.00071LEPR,LEPROT+FALSE
chr119543247TC5.23836E-05LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr1745761102TG0.00296.FALSE
chr111710798TG0.00328FBXO2-FALSE(CCT)nSINE,Alu
chr193826819AT0.00086DR1+FALSE(GTTTT)nSINE,Alu
chr299812988AG0.00474MRPL30+TRUEAluJbSINE,Alu
chr1201846634CA0.00852IPO9+FALSE(CA)nSINE,Alu
chr347628810TA0.00934SMARCC1-FALSE
chr132373831TG0.00252PTP4A2-FALSE(T)nSINE,Alu
chr161922501AC0.00231NFIA+FALSEA-richSINE,Alu
chr1953914411AG8.16883E-05ZNF765+TRUEAluSxSINE,Alu
chr4101946461GT0.00442PPP3CA-FALSE(T)nSINE,Alu
chr110520450TC0.00070.FALSEAluSx1SINE,Alu
chr1165065373AG0.00487POLA2+TRUEAluYSINE,Alu
chr115993514CT6.34808E-08.FALSEAluSx4SINE,Alu
chr1203277243GT1.60795E-05BTG2+FALSE
chr2220370192CT0.00055GMPPA+FALSE
chr1144828845AT0.00178NBPF20,NBPF9+FALSE
chrX152916235GA0.00015DUSP9+FALSE
chr452888499GA0.00366SGCB-FALSE
chr76063283CT0.00032AIMP2,EIF2AK1+,-FALSE
chr2242164677AG0.00117ANO7+TRUEAluSgSINE,Alu
chr2208619590AG0.00274CCNYL1,MIR4775+TRUEEutTc1-N2SINE,Alu
chr3197400501CG0.00270RUBCN-FALSE
chr3156258283TC0.00686SSR3-TRUEAluYk3SINE,Alu
chr2202031356CT0.00247CFLAR+FALSESVA_ASINE,Alu
chr1709591GA0.00226LOC100288069-FALSE
chr19160900TC0.00542.FALSEAluJbSINE,Alu
chr146159823TA0.00474TMEM69+FALSE
chr7112579815GT0.00997BMT2-FALSE(CGC)nSINE,Alu
chr27036682AT0.00335RSAD2+FALSE
chr12133297934AG9.03426E-06PGAM5+TRUEAluJoSINE,Alu
chr116574382AC0.00704FBXO42-FALSE
chr150883798TC0.00156DMRTA2-FALSE
chr1206669958GA0.00347IKBKE+FALSE
chr2102484205TA0.00434MAP4K4+FALSE
chr1160966434TC4.88498E-15F11R-TRUEAluSgSINE,Alu
chr1160990876CA1.09997E-06F11R-FALSE
chr1990773CT0.00705AGRN+FALSE
chr2183642878GA0.00373DNAJC10+FALSE
chr239009355AG0.00079.FALSEAluSx3SINE,Alu
chr2217366192TA0.00067.FALSE
chr3196556141GA0.00534PAK2+FALSE
chr1590375419TC0.00521C15orf38-AP3S2,AP3S2-TRUEAluJrSINE,Alu
chr1220232138TC0.00011RNU5F-1,BPNT1+,-FALSEAluSzSINE,Alu
chr2206983267TC0.00854.FALSEAluJbSINE,Alu
chr4190878580AG0.00052FRG1+FALSE
chr136535560AG0.00059.FALSEAluSx1SINE,Alu
chr145110404CT0.00230RNF220+FALSE
chr116890320TC0.00045NBPF1-FALSE
chr286979093GA0.00591RMND5A+FALSE
chr6109784327TC2.38076E-05MICAL1,ZBTB24-TRUEAluSgSINE,Alu
chr2105964472CT0.00398C2orf49+FALSE(TTTCTCC)nSINE,Alu
chr236776054CT0.00117CRIM1+FALSE
chr457326291AG0.00279PAICS+TRUEAluJrSINE,Alu
chr128662199AG7.40709E-05MED18+TRUEAluSq2SINE,Alu
chr117345246AT0.00812SDHB-FALSE
chr1143135063CA0.00397LOC102723769-FALSE
chr122854702CT4.66415E-11ZBTB40+FALSE
chr101086804TA0.00821IDI2-AS1,IDI1+,-FALSE
chr543377390TC0.00062CCL28-TRUEAluSzSINE,Alu
chr16582425TC0.00039NOL9-TRUEAluSx1SINE,Alu
chr119282314GT0.00158IFFO2-FALSE
chr1610623543TC0.00025EMP2-TRUEAluSpSINE,Alu
chr1114306369AT0.00834RSBN1-FALSE
chr1145284432GA0.00795NBPF20,NOTCH2NL+FALSE
chr4129795659AT0.00459JADE1+FALSE
chr5150827307GT0.00708SLC36A1+FALSE
chr1610623577TC0.00408EMP2-TRUEAluSpSINE,Alu
chr11595048TC0.00399CDK11B,SLC35E2B-TRUEAluSgSINE,Alu
chr6153292178CT0.00783FBXO5-FALSE
chr5130536842AG0.00016LYRM7+TRUEAluSx4SINE,Alu
chr285776621TC0.00194GGCX-TRUEAluSz6SINE,Alu

Differential Expression Gene Analysis