RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	36067760	T	C	0.00362	PSMB2	-	TRUE	AluSz	SINE,Alu
chrX	16781275	A	G	0.00417		.	FALSE	AluJo	SINE,Alu
chr1	16910172	G	A	0.00958	NBPF1	-	FALSE
chr1	9643195	A	G	0.00294		.	FALSE	AluSx	SINE,Alu
chr2	128604232	A	T	0.00652	POLR2D	-	FALSE
chr6	42855200	A	G	2.13337E-05	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr4	165998078	T	C	0.00407	TMEM192	-	TRUE	AluSx	SINE,Alu
chr1	10517564	T	C	0.00371		.	FALSE	AluSx1	SINE,Alu
chr1	1018144	T	C	0.00019	C1orf159	-	FALSE
chr1	19585903	G	A	0.00575	MRTO4	+	FALSE	AluJr	SINE,Alu
chr5	149363392	A	G	0.00531	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr6	44417182	A	G	0.00018	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr4	39551140	T	C	1.44695E-08	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	155058663	G	A	0.00300	EFNA3	+	FALSE
chr3	113370193	C	T	4.09251E-05	USF3	-	FALSE	UCON34	SINE,Alu
chr1	62164735	C	T	0.00016	TM2D1	-	FALSE	AluJb	SINE,Alu
chr3	15112630	C	T	0.00017	RBSN	-	FALSE	AluSq2	SINE,Alu
chr1	144931727	G	A	0.00037	NBPF20,PDE4DIP	+,-	FALSE
chr1	40537924	G	A	0.00245	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	150548877	C	G	0.00071	MCL1	-	FALSE
chr16	29454768	A	G	0.00564	SMG1P6,BOLA2-SMG1P6	-	FALSE
chr1	45244413	T	A	0.00750		.	FALSE
chr4	2841551	A	G	0.00258	SH3BP2	+	TRUE	AluJr	SINE,Alu
chr1	1419768	A	G	0.00250	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	155695998	A	G	0.00078	DAP3	+	TRUE	AluSp	SINE,Alu
chr6	3225721	C	G	4.80019E-07	TUBB2B	-	FALSE
chr5	96366315	T	C	0.00319		.	FALSE	(TC)n	SINE,Alu
chr6	52267967	A	C	0.00424	PAQR8	+	FALSE
chr1	70611296	A	T	0.00061	LRRC40	-	FALSE
chr1	148003752	T	C	0.00015	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr1	151862656	T	C	0.00933	THEM4	-	TRUE	AluSp	SINE,Alu
chr6	159396143	T	C	0.00185		.	FALSE	AluSc	SINE,Alu
chr6	47200348	T	C	0.00274	TNFRSF21	-	FALSE
chr1	12071680	A	G	0.00985	MFN2	+	FALSE
chr2	20424655	G	A	0.00193	SDC1	-	FALSE
chr1	16889513	T	C	0.00777	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	117648345	A	G	0.00739		.	FALSE
chr1	9162394	T	C	0.00072		.	FALSE	AluSx	SINE,Alu
chr5	37291617	T	C	0.00022		.	FALSE	AluSx3	SINE,Alu
chr1	28662254	A	G	0.00505	MED18	+	TRUE	AluSq2	SINE,Alu
chr2	127826533	A	G	0.00104	BIN1	-	FALSE
chr14	75202963	A	G	2.20276E-06	FCF1	+	TRUE	AluSx	SINE,Alu
chr1	120695049	G	A	0.00129		.	FALSE
chr1	16944953	T	G	0.00158	CROCCP2	-	FALSE
chr1	223967953	C	T	0.00341	TP53BP2	-	FALSE
chr1	214527252	G	A	0.00181	PTPN14	-	FALSE	MADE2	SINE,Alu
chr1	145509570	A	G	0.00043	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr5	139931633	C	A	0.00014	SRA1	-	FALSE
chr1	67874252	C	A	0.00558	SERBP1	-	FALSE
chr2	203741602	T	C	0.00581		.	FALSE	AluJr	SINE,Alu
chr2	28002602	C	A	0.00037	MRPL33	+	FALSE
chr6	13788222	T	C	0.00490	MCUR1	-	TRUE	AluSx	SINE,Alu
chr2	217366901	A	G	0.00143		.	FALSE	AluSz6	SINE,Alu
chr2	96573123	C	T	0.00413	ANKRD36C	-	FALSE
chr1	10517300	T	C	0.00011		.	FALSE	AluJr	SINE,Alu
chr17	76626300	C	T	0.00097	LOC101928710	-	FALSE
chr3	191110320	G	A	0.00419	CCDC50	+	FALSE
chr1	46764013	G	A	0.00224	LRRC41	-	FALSE
chr17	42877749	T	C	0.00287	GJC1	-	TRUE	AluSg	SINE,Alu
chr4	41956313	A	G	0.00710	TMEM33	+	FALSE
chr1	144619903	T	A	0.00712	NBPF20,NBPF9	+	FALSE
chr9	34088016	G	A	0.00226	DCAF12	-	FALSE
chr2	187544222	A	G	0.00411	ITGAV	+	FALSE
chr1	16909208	C	G	0.00482	NBPF1	-	FALSE
chr1	24746451	A	G	0.00683	NIPAL3	+	TRUE	AluSc	SINE,Alu
chr8	48889659	A	G	1.71928E-05	MCM4	+	TRUE	AluSx3	SINE,Alu
chr1	113248365	A	G	0.00252	RHOC	-	FALSE
chr1	43394666	G	A	0.00224	SLC2A1	-	FALSE
chr2	25013062	T	C	0.00327		.	FALSE
chr1	36068370	T	C	0.00789	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	53289688	A	G	0.00731	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr19	21367098	A	G	0.00147	ZNF431	+	TRUE	AluSc	SINE,Alu
chr3	179117646	G	A	0.00812	GNB4	-	FALSE
chr1	15832543	T	C	0.00553	CASP9	-	FALSE
chr3	148863151	A	G	0.00062	HPS3	+	FALSE
chr1	15736656	A	G	0.00958	EFHD2	+	FALSE
chr19	11257673	T	C	0.00211	SPC24	-	TRUE	AluSp	SINE,Alu
chr1	40537941	A	C	0.00216	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	16932429	C	G	0.00076	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr5	37290400	T	C	0.00085		.	FALSE	AluSz	SINE,Alu
chr3	133307642	T	G	0.00523	CDV3	+	FALSE	(TT)n	SINE,Alu
chr1	16892275	C	T	0.00087	NBPF1	-	FALSE
chr1	145209366	A	G	0.00019	NBPF20,NOTCH2NL	+	FALSE
chr2	37328027	T	C	0.00026		.	FALSE
chr2	61277775	A	G	0.00640	PEX13	+	TRUE	AluY	SINE,Alu
chr4	68587786	G	T	0.00658	UBA6-AS1	+	FALSE	MER41B	SINE,Alu
chr1	1252468	T	C	0.00182	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr4	38946824	C	T	0.00250	FAM114A1	+	FALSE
chr12	64842974	C	A	0.00925		.	FALSE	AluSz	SINE,Alu
chr5	149829068	C	T	0.00038	RPS14	-	FALSE
chr1	145512059	A	G	0.00053	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr5	41917695	C	T	0.00019	C5orf51	+	FALSE
chr1	110136321	T	A	0.00721	GNAI3	+	FALSE
chr1	120165038	A	G	0.00926	ZNF697	-	FALSE
chr1	35817025	T	A	0.00987	ZMYM4	+	FALSE
chr2	69688901	T	C	0.00503	AAK1	-	TRUE	AluSq2	SINE,Alu
chr1	789232	C	T	0.00335	LINC01128	+	FALSE
chr1	230461079	G	A	9.74527E-05	PGBD5	-	FALSE
chrX	152916229	G	A	0.00809	DUSP9	+	FALSE
chr19	7116159	G	T	0.00368	INSR	-	FALSE
chr7	26708303	G	T	0.00095	SKAP2	-	FALSE	AluSx3	SINE,Alu
chr3	122283291	C	A	0.00061	DTX3L,PARP9	+,-	FALSE
chr1	28661576	A	G	0.00625	MED18	+	TRUE	AluSg	SINE,Alu
chr1	59124634	C	A	0.00322	MYSM1	-	FALSE	(AC)n	SINE,Alu
chr7	156764350	G	C	0.00415	NOM1	+	FALSE
chr3	139076427	C	T	0.00014		.	FALSE
chr1	10519064	T	C	0.00192		.	FALSE	AluSx3	SINE,Alu
chr3	194124421	A	G	0.00024	ATP13A3	-	FALSE
chr1	10520532	T	C	0.00013		.	FALSE	AluSx1	SINE,Alu
chr2	47604176	C	T	0.00328	EPCAM	+	FALSE
chr1	159946779	G	A	0.00019	LINC01133	+	FALSE	(GAAA)n	SINE,Alu
chr19	7084638	A	G	0.00024	ZNF557	+	TRUE	AluJb	SINE,Alu
chr1	20976023	T	C	6.30669E-06	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	233514975	G	T	0.00584	MLK4	+	FALSE
chr17	42880190	T	C	0.00284	GJC1	-	TRUE	AluJb	SINE,Alu
chr1	26143697	G	C	0.00778	SEPN1	+	FALSE
chr2	37331116	T	C	0.00286		.	FALSE	AluSx1	SINE,Alu
chr17	65334753	T	C	4.53868E-08	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	28573293	G	A	0.00059		.	FALSE
chr2	201774774	T	C	0.00017		.	FALSE	AluJr4	SINE,Alu
chr3	12940346	G	A	0.00411	IQSEC1	-	FALSE
chr1	32385070	T	A	0.00593	PTP4A2	-	FALSE
chr1	8413129	G	A	0.00040	RERE	-	FALSE
chr2	217001882	T	C	0.00996	XRCC5	+	FALSE
chr19	811933	C	T	0.00026	PTBP1	+	FALSE
chr9	116812614	A	G	0.00674	ZNF618	+	FALSE
chr5	141691252	T	C	0.00596	SPRY4	-	FALSE
chr1	36534024	A	G	0.00635		.	FALSE	FLAM_A	SINE,Alu
chr1	55207983	T	A	0.00018	MROH7-TTC4,TTC4	+	FALSE
chr1	154128839	G	T	0.00534	TPM3	-	FALSE
chr1	149581866	C	G	0.00774	LINC00623,LINC00869,LOC103091866	+	FALSE	L2b	SINE,Alu
chr1	6614188	C	T	0.00906	NOL9	-	FALSE
chr1	46075663	A	G	0.00543	NASP	+	TRUE	AluSx4	SINE,Alu
chr7	5085646	C	T	0.00168	RBAK-RBAKDN,RBAK	+	FALSE
chr4	2516790	G	T	0.00141	RNF4	+	FALSE
chr2	11323078	C	T	0.00539	ROCK2	-	FALSE
chr1	46075709	A	G	0.00431	NASP	+	TRUE	AluSx4	SINE,Alu
chr2	178186556	G	A	0.00917	LOC100130691	-	FALSE
chr15	74319733	A	G	0.00524	PML	+	TRUE	AluJr	SINE,Alu
chr1	10437811	A	G	0.00800	KIF1B	+	TRUE	AluSg	SINE,Alu
chr1	155161704	G	C	0.00034	MUC1	-	FALSE
chr1	16842064	A	C	0.00079		.	FALSE	MER41E	SINE,Alu
chr17	10578246	A	G	0.00093		.	FALSE
chr1	21100753	T	C	0.00624	HP1BP3	-	TRUE	AluJr	SINE,Alu
chr1	567783	T	C	0.00427	MIR6723	-	FALSE
chr5	139931631	G	C	0.00138	SRA1	-	FALSE
chr2	202030111	A	G	0.00983	CFLAR	+	TRUE	AluSx1	SINE,Alu
chr17	46941448	G	T	0.00017	CALCOCO2	+	FALSE	AluSz6	SINE,Alu
chr17	38632679	T	G	0.00044	TNS4	-	FALSE	(GT)n	SINE,Alu
chr1	160967890	T	C	0.00871	F11R	-	TRUE	AluSp	SINE,Alu
chr9	140709880	C	T	0.00178	EHMT1	+	FALSE
chr3	44487862	G	A	0.00262	ZNF445	-	FALSE
chr3	40578933	A	G	0.00947	ZNF621	+	TRUE	AluJr	SINE,Alu
chr1	109818161	C	T	0.00382	CELSR2	+	FALSE
chr1	20976163	C	T	0.00174	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr2	208619590	A	G	0.00274	CCNYL1,MIR4775	+	TRUE	EutTc1-N2	SINE,Alu
chr1	148241604	G	T	0.00756	NBPF8	-	FALSE	U1	SINE,Alu
chr1	11982580	G	A	2.06927E-05	KIAA2013	-	FALSE
chr8	56985609	G	T	0.00134	RPS20	-	FALSE
chr6	116600774	C	G	0.00180	DSE,TSPYL1	+,-	FALSE
chr3	10193358	A	G	1.11864E-10	VHL	+	TRUE	L1ME4a	SINE,Alu
chr7	38764340	T	C	0.00630	VPS41	-	TRUE	AluSp	SINE,Alu
chr1	1345051	A	G	0.00362		.	FALSE	AluSg	SINE,Alu
chr1	44072018	C	T	0.00783	PTPRF	+	FALSE
chr2	196602326	T	G	0.00503	SLC39A10	+	FALSE
chr1	38327700	T	C	0.00132	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr1	168218504	T	C	0.00748		.	FALSE	AluSz	SINE,Alu
chr1	171558516	C	T	4.87297E-05	PRRC2C	+	FALSE
chr2	9630231	C	T	0.00895	ADAM17	-	FALSE
chr2	207943813	G	T	0.00619	KLF7	-	FALSE	(TTTTGT)n	SINE,Alu
chr2	128951094	A	G	0.00415	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr1	16890644	C	T	0.00174	NBPF1	-	FALSE
chr1	70717293	G	A	0.00716	SRSF11	+	FALSE
chr1	16918734	G	C	0.00600	NBPF1	-	FALSE
chr1	115119377	A	T	0.00157	BCAS2	-	FALSE
chr9	80888613	A	G	0.00904		.	FALSE	AluSx	SINE,Alu
chr1	78414285	T	A	0.00179	FUBP1	-	FALSE
chr1	67874859	T	C	0.00209	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	16932912	T	C	0.00525	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	9160975	T	C	0.00858		.	FALSE	AluJb	SINE,Alu
chr18	29410068	C	T	0.00807	TRAPPC8	-	FALSE
chr1	31344952	C	T	0.00544	SDC3	-	FALSE
chr7	299850	G	T	1.36182E-06	FAM20C	+	FALSE
chr1	20976023	T	C	0.00889	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	26901090	C	T	0.00952	RPS6KA1	+	FALSE
chr2	3592638	T	C	0.00941	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr1	10520378	T	C	0.00115		.	FALSE	AluSx1	SINE,Alu
chr1	32373838	T	G	0.00376	PTP4A2	-	FALSE	(T)n	SINE,Alu
chr8	27661063	T	A	0.00138	ESCO2	+	FALSE	(AC)n	SINE,Alu
chr1	162497663	G	A	0.00365	UHMK1	+	FALSE
chr2	37327669	T	C	0.00566		.	FALSE
chr3	17200672	C	A	0.00665	TBC1D5	-	FALSE
chr1	144822066	A	G	0.00020	NBPF20,NBPF9	+	FALSE
chr12	98943149	A	G	0.00019	TMPO	+	TRUE	AluSz	SINE,Alu
chr6	31506635	T	G	6.78064E-05		.	FALSE
chr3	194125524	C	T	0.00271	ATP13A3	-	FALSE
chr2	99812450	A	G	7.07141E-05	MRPL30	+	TRUE	AluSx	SINE,Alu
chr1	59122059	G	A	0.00476	MYSM1	-	FALSE
chr19	53914417	A	G	0.00013	ZNF765	+	TRUE	AluSx	SINE,Alu
chr14	75202856	A	G	3.12821E-09	FCF1	+	TRUE	AluSx	SINE,Alu
chr3	156259295	T	C	0.00039	SSR3	-	TRUE	AluSq2	SINE,Alu
chr1	16973198	G	A	0.00514	MST1P2	+	FALSE
chr3	197612334	A	G	0.00070		.	FALSE	AluSp	SINE,Alu
chr6	47592330	T	A	0.00830	CD2AP	+	FALSE
chr15	59952905	A	G	0.00150	BNIP2	-	FALSE
chr2	55459824	C	T	0.00763	RPS27A	+	FALSE
chr1	16061035	G	C	0.00089	PLEKHM2	+	FALSE
chr1	33149502	A	G	0.00045	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr4	120219638	A	T	0.00970	C4orf3	-	FALSE
chr1	85278665	A	G	0.00242		.	FALSE
chr1	204525672	A	G	0.00375	MDM4	+	TRUE	AluSz	SINE,Alu
chr17	263367	A	T	2.02495E-05	LOC105371430,C17orf97	+,-	FALSE
chr1	160967856	T	C	0.00116	F11R	-	TRUE	AluSp	SINE,Alu
chr10	61548856	T	C	0.00067	CCDC6	-	FALSE
chr3	197611106	A	G	0.00137		.	FALSE	AluSx1	SINE,Alu
chr3	10192825	A	G	0.00042	VHL	+	TRUE	AluSx1	SINE,Alu
chr8	144681777	G	T	0.00383	TIGD5	+	FALSE
chr3	10192652	A	G	0.00155	VHL	+	TRUE	AluSx1	SINE,Alu
chr5	140720886	A	G	0.00980	PCDHGA1,PCDHGA2	+	FALSE
chr1	10517653	T	C	0.00228		.	FALSE	AluSx1	SINE,Alu
chr15	41593269	A	G	0.00196		.	FALSE	AluSz6	SINE,Alu
chr17	56081432	G	A	4.92367E-05	SRSF1	-	FALSE
chr4	1388115	C	G	0.00682	CRIPAK	+	FALSE	L1MB4	SINE,Alu
chr1	224302047	C	T	3.20569E-05	FBXO28	+	FALSE
chr1	204520250	A	G	0.00706	MDM4	+	TRUE	AluJb	SINE,Alu
chr2	99992822	A	C	0.00266	EIF5B	+	FALSE
chr3	49053219	A	G	1.70535E-05	WDR6,DALRD3	+,-	FALSE
chr1	145511968	A	G	0.00411	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr14	65400786	T	G	0.00077	CHURC1-FNTB,CHURC1	+	FALSE	AluSx	SINE,Alu
chr2	55516897	A	G	1.06852E-06	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	33149373	A	G	0.00264	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	154454628	T	C	0.00099	SHE	-	TRUE	AluSq2	SINE,Alu
chr1	145689717	A	G	3.41980E-05	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr2	223807817	A	C	0.00991	ACSL3	+	FALSE	(A)n	SINE,Alu
chr1	10520439	T	C	0.00293		.	FALSE	AluSx1	SINE,Alu
chr10	94414146	A	G	0.00911	KIF11	+	FALSE
chr5	17276055	T	C	0.00784	BASP1	+	FALSE	(TC)n	SINE,Alu
chr7	148700782	G	A	0.00209	PDIA4	-	FALSE
chr1	9294903	C	G	0.00353	H6PD	+	FALSE
chr1	202848587	G	A	2.63176E-05	RABIF	-	FALSE
chr1	201355943	C	T	0.00355	LAD1	-	FALSE
chr3	62189465	C	T	2.69664E-05	PTPRG	+	FALSE
chr1	118472382	G	T	0.00029	WDR3	+	FALSE
chr5	148382005	C	A	8.42472E-06	SH3TC2	-	FALSE
chr2	206986245	T	C	0.00979		.	FALSE	AluSz	SINE,Alu
chr1	10518734	T	C	0.00143		.	FALSE	AluSx1	SINE,Alu
chr2	174090636	T	A	0.00043	ZAK,MLK7-AS1	+,-	FALSE
chr8	12879062	T	C	0.00035	KIAA1456	+	FALSE
chr7	75958147	T	A	0.00917	YWHAG	-	FALSE
chr3	45960560	T	A	0.00201	FYCO1	-	FALSE
chr1	31345067	G	T	0.00804	SDC3	-	FALSE
chr1	51873951	G	A	0.00588	EPS15	-	FALSE
chr1	2282776	G	C	0.00011	MORN1,LOC100129534	-	FALSE
chr1	44072066	C	T	0.00846	PTPRF	+	FALSE
chr8	143763622	C	T	0.00470	PSCA	+	FALSE
chr6	24720533	C	G	0.00023		.	FALSE
chr19	39433141	A	G	0.00224	FBXO17	-	FALSE	AluJb	SINE,Alu
chr2	206983075	T	C	0.00083		.	FALSE	AluJb	SINE,Alu
chr10	117823566	G	T	0.00433	GFRA1	-	FALSE	(ATC)n	SINE,Alu
chr1	16933623	G	A	0.00789	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr4	164245873	T	A	0.00014	NPY1R	-	FALSE
chr12	7052982	T	G	0.00199	C12orf57	+	FALSE	U7	SINE,Alu
chr1	1245100	C	T	0.00656	PUSL1	+	FALSE
chr6	116256595	C	A	5.71236E-05		.	FALSE
chr5	64964627	T	C	2.01273E-05	SGTB	-	TRUE	AluSx1	SINE,Alu
chr14	31916792	C	T	3.89824E-05	LOC101927124,DTD2	+,-	FALSE	AluSc8	SINE,Alu
chr2	86249962	T	C	0.00443	LOC90784	-	TRUE	AluJr	SINE,Alu
chr1	33086876	T	C	0.00075	ZBTB8OS	-	TRUE	AluY	SINE,Alu
chr19	9672979	T	C	0.00028		.	FALSE	AluSx3	SINE,Alu
chr1	19586501	A	G	0.00119	MRTO4	+	TRUE	AluSz	SINE,Alu
chr3	149683508	A	G	0.00397	PFN2	-	FALSE
chr1	36529549	A	G	0.00806		.	FALSE	AluJr	SINE,Alu
chr6	13788215	T	C	0.00546	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	45241587	G	A	0.00248	RPS8,SNORD55	+	FALSE
chr2	86249930	T	C	0.00054	LOC90784	-	TRUE	AluJr	SINE,Alu
chr3	45722287	A	G	0.00197	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr15	22969232	G	A	0.00017	CYFIP1	+	FALSE
chr7	91630349	T	A	0.00111	AKAP9	+	FALSE
chr1	38326728	T	C	0.00079	INPP5B	-	TRUE	AluJr	SINE,Alu
chr1	53288897	A	G	0.00160	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	183876182	C	T	0.00494	RGL1	+	FALSE
chr14	90871942	C	A	0.00057	CALM1	+	FALSE
chr4	39552183	T	C	0.00479	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr1	16861718	C	T	0.00891	LOC100132147	-	FALSE
chr5	73932315	T	C	0.00420	ENC1	-	FALSE
chr2	1637531	A	G	0.00664	PXDN	-	FALSE
chr1	19542310	T	C	0.00582	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr2	201253956	A	G	1.78964E-05	SPATS2L	+	FALSE
chr2	38971040	G	T	0.00651	SRSF7	-	FALSE
chr5	125962175	A	G	0.00020	PHAX	+	TRUE	AluSc	SINE,Alu
chr7	75115154	C	T	0.00405	POM121C	-	FALSE
chr1	33149338	A	G	0.00367	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	204525667	A	G	3.94227E-05	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	145369589	T	C	0.00046	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	112266787	G	T	0.00873	FAM212B	-	FALSE
chr2	202242616	G	A	0.00880	TRAK2	-	FALSE
chr17	4574751	T	A	0.00246	PELP1	-	FALSE
chr1	53679878	T	C	0.00348	C1orf123	-	FALSE
chr1	9163402	T	C	4.95479E-05		.	FALSE	AluSp	SINE,Alu
chr12	133298423	A	G	2.89213E-13	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	144606963	G	T	0.00337	NBPF20	+	FALSE
chr2	37429532	A	G	0.00014	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr15	59954723	T	A	0.00043	BNIP2	-	FALSE
chr5	37290554	T	C	7.20052E-07		.	FALSE	AluSz	SINE,Alu
chr1	16928622	C	A	0.00011	NBPF1	-	FALSE
chr1	16893813	A	G	0.00255	NBPF1	-	FALSE
chr3	78646942	T	G	0.00093	ROBO1	-	FALSE
chr1	21795388	A	G	0.00732	NBPF3	+	FALSE
chr1	59142713	T	C	0.00078	MYSM1	-	FALSE
chr1	55207985	G	A	0.00156	MROH7-TTC4,TTC4	+	FALSE
chr7	75958149	A	C	0.00050	YWHAG	-	FALSE
chr12	12967264	C	G	0.00781	DDX47	+	FALSE
chr2	43625184	T	A	0.00587	THADA	-	FALSE
chr1	50906945	C	T	0.00178	FAF1	-	FALSE
chr1	9163110	T	C	4.21626E-05		.	FALSE	FRAM	SINE,Alu
chr8	100890423	C	A	0.00113	COX6C	-	FALSE
chr8	25272447	A	T	0.00770	DOCK5	+	FALSE
chr1	160231113	C	T	0.00204	DCAF8	-	FALSE
chr2	9770610	A	G	0.00486	YWHAQ	-	FALSE
chr5	141690819	G	A	0.00062	SPRY4	-	FALSE
chr1	45280109	A	G	0.00591		.	FALSE	AluYk3	SINE,Alu
chr1	19499560	T	C	0.00226	UBR4	-	FALSE
chr3	195411991	C	A	0.00058	SDHAP2	+	FALSE
chr1	23834008	A	C	0.00374	E2F2	-	FALSE	AluSz	SINE,Alu
chr2	128949342	A	G	0.00397	UGGT1	+	TRUE	AluSg	SINE,Alu
chr1	20976174	T	C	0.00103	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr5	60050122	A	T	0.00272	ELOVL7	-	FALSE
chr6	160100931	T	C	0.00215	SOD2	-	TRUE	AluSz	SINE,Alu
chr17	66264542	A	T	0.00110	ARSG,SLC16A6	+,-	FALSE
chr2	170403030	T	C	0.00294	FASTKD1	-	FALSE
chr1	28661576	A	G	0.00939	MED18	+	TRUE	AluSg	SINE,Alu
chr16	81064534	A	G	0.00480	CENPN	+	TRUE	AluSg	SINE,Alu
chr16	18794286	C	T	0.00633	RPS15A	-	FALSE
chr1	9428685	T	G	0.00416	SPSB1	+	FALSE
chr7	152345392	T	C	0.00643	XRCC2	-	TRUE	AluSx1	SINE,Alu
chr19	42376711	A	G	0.00223		.	FALSE	AluSp	SINE,Alu
chr12	56510704	G	A	0.00042	RPL41	+	FALSE
chr1	53289860	A	G	0.00041	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr6	170887693	G	C	0.00045	PDCD2	-	FALSE
chr8	145159712	A	G	0.00402	MAF1	+	FALSE
chr19	58372763	A	G	0.00479	ZNF587	+	TRUE	AluSx	SINE,Alu
chr2	61315734	A	G	0.00396	KIAA1841	+	TRUE	AluSg	SINE,Alu
chr1	36806071	G	A	0.00126	STK40	-	FALSE
chr2	242512138	A	G	9.62871E-05	BOK	+	FALSE
chr1	19543282	T	C	0.00020	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	11674374	A	G	0.00559	GREB1	+	FALSE	Tigger9b	SINE,Alu
chr9	96438967	G	C	0.00648	PHF2	+	FALSE	(CTCCAC)n	SINE,Alu
chr1	145100851	A	G	0.00066	NBPF20,SEC22B	+	FALSE	AluSg4	SINE,Alu
chr2	209221291	T	G	0.00033	PIKFYVE	+	FALSE	AluSx	SINE,Alu
chr1	179832838	A	G	0.00018	TOR1AIP2	-	FALSE	MLT1L	SINE,Alu
chr1	16892135	G	A	0.00182	NBPF1	-	FALSE
chr1	16160968	C	T	0.00524	FLJ37453	-	FALSE	(T)n	SINE,Alu
chr19	57802824	G	A	0.00924	ZNF460	+	FALSE
chr16	11931208	A	T	0.00316	RSL1D1	-	FALSE
chr1	225974581	A	G	0.00732	SRP9	+	TRUE	AluJr	SINE,Alu
chr1	118167515	C	T	4.87028E-05	FAM46C	+	FALSE
chr1	160967857	T	C	0.00806	F11R	-	TRUE	AluSp	SINE,Alu
chr1	40306898	T	C	9.21891E-07	TRIT1	-	FALSE
chr2	206986291	T	C	0.00143		.	FALSE	AluSz	SINE,Alu
chr2	223807622	G	T	0.00875	ACSL3	+	FALSE
chr1	155039464	C	T	2.82294E-06	EFNA4	+	FALSE
chr1	145284134	G	C	0.00203	NBPF20,NOTCH2NL	+	FALSE	(TG)n	SINE,Alu
chr1	28825331	A	G	1.84239E-05	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr5	40830050	T	C	0.00042		.	FALSE	AluSp	SINE,Alu
chr1	32661615	A	T	0.00033	TXLNA	+	FALSE
chr17	57281098	A	G	0.00181	PRR11	+	TRUE	AluSz	SINE,Alu
chr1	46164493	T	C	0.00977	IPP	-	TRUE	AluJb	SINE,Alu
chr1	45671434	G	C	0.00819	ZSWIM5	-	FALSE
chr1	17735300	C	A	0.00128	RCC2	-	FALSE
chr1	10520505	T	C	0.00011		.	FALSE	AluSx1	SINE,Alu
chr1	33148118	A	G	0.00374	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr2	11781593	G	T	0.00551	GREB1	+	FALSE
chr3	47628808	A	T	0.00792	SMARCC1	-	FALSE
chr2	242384528	G	T	2.14488E-07	FARP2	+	FALSE	AluJr	SINE,Alu
chr20	25428384	A	G	0.00195	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	3697486	C	G	0.00110	LRRC47	-	FALSE	AluSc	SINE,Alu
chr1	10521254	T	C	0.00023	DFFA	-	TRUE	AluY	SINE,Alu
chr2	206986988	T	C	0.00957		.	FALSE	AluJr	SINE,Alu
chr7	6064012	T	C	0.00240	EIF2AK1	-	FALSE
chr12	133298069	A	G	6.69127E-09	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	44035352	C	T	0.00055	PTPRF	+	FALSE
chr21	44331718	A	G	0.00410		.	FALSE	AluJb	SINE,Alu
chr2	61405795	G	T	0.00061	AHSA2	+	FALSE
chr3	15114293	T	C	2.60553E-05	RBSN	-	TRUE	AluY	SINE,Alu
chr1	145688664	A	T	0.00298	NBPF20,NBPF10,RNF115	+	FALSE
chr1	67874731	T	C	0.00817	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr3	40578997	A	G	0.00094	ZNF621	+	TRUE	AluJr	SINE,Alu
chr1	19542310	T	C	0.00873	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	246931057	A	G	0.00048	SCCPDH	+	FALSE
chr1	179814457	A	C	0.00152	TOR1AIP2	-	FALSE
chrX	77083981	T	C	0.00647	MAGT1	-	TRUE	AluSz	SINE,Alu
chr11	69468187	G	T	0.00827	CCND1	+	FALSE	(T)n	SINE,Alu
chr1	22852880	G	C	0.00247	ZBTB40	+	FALSE
chr4	2940413	T	C	0.00311	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	33148196	A	G	0.00756	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	179326278	A	G	0.00379	SOAT1	+	TRUE
chr15	65442523	G	A	0.00068	CLPX	-	FALSE	AluSg4	SINE,Alu
chr1	6582558	T	C	0.00479	NOL9	-	TRUE	AluSx1	SINE,Alu
chr1	156692052	T	A	0.00369	ISG20L2	-	FALSE	AluY	SINE,Alu
chr1	45976722	G	T	0.00292	MMACHC,PRDX1	+,-	FALSE
chr2	198572082	T	C	0.00093	MARS2	+	FALSE
chr1	145511998	A	G	0.00715	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	40539208	A	T	2.90582E-07	PPT1	-	FALSE
chr1	27992825	G	A	0.00192	IFI6	-	FALSE
chr1	224380498	A	G	6.58460E-05	DEGS1	+	TRUE	AluSx	SINE,Alu
chr14	105676287	C	T	0.00036	BRF1	-	FALSE
chr1	16932845	T	G	0.00732	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr3	44790624	T	C	0.00150	KIAA1143	-	TRUE	AluY	SINE,Alu
chr10	75008817	T	C	1.29877E-10	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr17	3561396	C	T	0.00322	CTNS	+	FALSE
chr4	177252326	A	G	0.00554	SPCS3	+	TRUE
chr9	111781030	C	T	0.00413	TMEM245	-	FALSE	AluJb	SINE,Alu
chr5	145838680	A	G	0.00395	TCERG1	+	FALSE	(GCCCAG)n	SINE,Alu
chr2	234775941	A	G	0.00161	MSL3P1	-	FALSE
chr5	1317949	C	T	0.00173	CLPTM1L	-	FALSE
chr1	25169634	A	G	0.00843	CLIC4	+	FALSE
chr1	92862896	A	G	6.86172E-05		.	FALSE	AluJr	SINE,Alu
chr1	10003320	G	A	0.00168	LZIC,NMNAT1	+,-	FALSE
chr15	41590999	A	G	0.00049	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr8	117858601	T	A	0.00891	RAD21	-	FALSE
chr1	245017464	T	A	0.00314	HNRNPU,SNORA100	-	FALSE
chr2	206861649	T	A	0.00066	INO80D	-	FALSE
chr1	1595586	T	C	0.00051	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr2	91955209	G	A	6.38312E-06		.	FALSE
chr2	209221291	T	G	0.00020	PIKFYVE	+	FALSE	AluSx	SINE,Alu
chr1	322711	A	G	0.00149		.	FALSE
chr16	80636297	C	G	0.00161	CDYL2	-	FALSE
chr1	16958064	A	G	0.00446		.	FALSE
chr2	37327670	T	C	0.00297		.	FALSE
chr3	45153708	G	A	4.36430E-08	CDCP1	-	FALSE
chr1	93299394	A	G	0.00655	FAM69A,RPL5	+,-	FALSE
chr17	4929000	A	G	0.00214	KIF1C	+	TRUE	AluY	SINE,Alu
chr1	94335332	G	T	0.00973	DNTTIP2	-	FALSE
chr1	153507108	A	G	2.72071E-06	S100A6	-	FALSE
chr3	196079700	T	C	0.00518		.	FALSE	AluSc	SINE,Alu
chr1	22854931	C	A	0.00238	ZBTB40	+	FALSE	A-rich	SINE,Alu
chr1	25570566	C	G	0.00326	RSRP1	-	FALSE	Alu	SINE,Alu
chr1	46164493	T	C	0.00325	IPP	-	TRUE	AluJb	SINE,Alu
chr1	206566195	C	T	0.00052	SRGAP2	+	FALSE
chr1	25894466	A	C	0.00783	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chrX	77084038	T	C	0.00265	MAGT1	-	TRUE	AluSz	SINE,Alu
chr17	8378932	A	G	0.00372	MYH10	-	FALSE
chr1	151846854	T	G	0.00626	THEM4	-	FALSE	AluSx	SINE,Alu
chr1	224380757	A	G	0.00618	DEGS1	+	FALSE	AluSx	SINE,Alu
chr1	197125427	T	C	0.00331	ZBTB41	-	FALSE
chr1	21810693	A	G	0.00370	NBPF3	+	FALSE	L1MC4	SINE,Alu
chr1	168220529	A	G	0.00161		.	FALSE	AluSz6	SINE,Alu
chr2	136542434	A	T	0.00606	UBXN4	+	FALSE	L1ME4b	SINE,Alu
chr2	37330146	C	G	2.68632E-05		.	FALSE
chr20	25428308	A	G	0.00185	GINS1	+	TRUE	AluSz	SINE,Alu
chr3	45960557	C	T	1.72644E-06	FYCO1	-	FALSE
chr19	46053667	A	G	0.00995	OPA3	-	FALSE
chr5	147793406	A	G	0.00323	FBXO38	+	FALSE
chr1	156613632	G	A	0.00187	BCAN	+	FALSE
chr2	85773061	A	G	0.00052	GGCX	-	FALSE
chr1	36752811	C	T	2.19602E-12	THRAP3	+	FALSE
chr1	16889642	T	C	6.70250E-05	NBPF1	-	TRUE
chr3	99886662	G	A	0.00011	CMSS1	+	FALSE

RBP	CALR
Knock-Method	shRNA
RBP Family	Calreticulin
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR040WAK
Platform	HiSeq
Pubmed ID	32252787

CALR - Target Gene Network